Wall clock time and date at job start Tue Mar 31 2020 23:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47063 * 2 1 4 4 C 1.53007 * 109.47119 * 240.00456 * 2 1 3 5 5 C 1.52996 * 109.47034 * 175.00149 * 4 2 1 6 6 H 1.08997 * 110.83772 * 51.34775 * 5 4 2 7 7 C 1.54812 * 110.90718 * 175.00075 * 5 4 2 8 8 C 1.54107 * 104.18920 * 139.07408 * 7 5 4 9 9 O 1.43741 * 107.41710 * 1.95579 * 8 7 5 10 10 C 1.44573 * 106.87566 * 333.66963 * 9 8 7 11 11 N 1.46494 * 109.47483 * 120.00386 * 2 1 3 12 12 S 1.65595 * 120.00099 * 265.00343 * 11 2 1 13 13 O 1.42098 * 106.40525 * 178.53784 * 12 11 2 14 14 O 1.42102 * 106.40134 * 311.45569 * 12 11 2 15 15 C 1.76198 * 107.22046 * 64.99555 * 12 11 2 16 16 C 1.38633 * 119.75209 * 269.72797 * 15 12 11 17 17 C 1.37614 * 120.25496 * 179.76247 * 16 15 12 18 18 C 1.40722 * 119.73873 * 0.52972 * 17 16 15 19 19 C 1.41393 * 120.24560 * 179.74230 * 18 17 16 20 20 H 1.07999 * 119.99983 * 150.20371 * 19 18 17 21 21 C 1.39947 * 120.00124 * 330.21659 * 19 18 17 22 22 N 1.30817 * 120.00603 * 161.72828 * 21 19 18 23 23 Si 1.86806 * 119.99841 * 341.72553 * 21 19 18 24 24 H 1.48501 * 109.46843 * 95.41312 * 23 21 19 25 25 H 1.48499 * 109.47125 * 215.41506 * 23 21 19 26 26 H 1.48499 * 109.46752 * 335.41474 * 23 21 19 27 27 C 1.40719 * 119.51205 * 359.72821 * 18 17 16 28 28 C 1.37620 * 119.74291 * 359.97438 * 27 18 17 29 29 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46937 * 299.99530 * 1 2 3 31 31 H 1.08998 * 109.47654 * 59.99842 * 1 2 3 32 32 H 1.09003 * 109.47049 * 54.99664 * 4 2 1 33 33 H 1.09001 * 109.46713 * 294.99689 * 4 2 1 34 34 H 1.08999 * 110.48474 * 20.39927 * 7 5 4 35 35 H 1.08994 * 110.60005 * 257.80642 * 7 5 4 36 36 H 1.08996 * 109.87403 * 121.45287 * 8 7 5 37 37 H 1.09003 * 109.87761 * 242.45726 * 8 7 5 38 38 H 1.09007 * 110.50291 * 281.38447 * 10 9 8 39 39 H 1.08996 * 110.78115 * 158.51101 * 10 9 8 40 40 H 0.97003 * 120.00183 * 84.99619 * 11 2 1 41 41 H 1.08008 * 119.87043 * 359.97438 * 16 15 12 42 42 H 1.07990 * 120.13280 * 180.23317 * 17 16 15 43 43 H 0.96994 * 120.00634 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.12648 * 179.97438 * 27 18 17 45 45 H 1.08003 * 119.87172 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 4.0158 -0.9267 -0.3723 7 6 4.1275 -1.4373 -2.4974 8 6 5.2324 -0.5413 -3.0900 9 8 5.3068 0.6432 -2.2792 10 6 4.0022 0.8270 -1.6839 11 7 2.0184 -0.6906 1.1960 12 16 2.4122 0.1770 2.5504 13 8 2.8124 -0.7699 3.5314 14 8 3.2437 1.2442 2.1156 15 6 0.9275 0.9145 3.1474 16 6 0.5584 2.1748 2.7031 17 6 -0.6015 2.7585 3.1588 18 6 -1.4082 2.0757 4.0879 19 6 -2.5994 2.6677 4.5674 20 1 -3.4314 2.0451 4.8614 21 6 -2.7002 4.0604 4.6609 22 7 -3.8759 4.6264 4.7529 23 14 -1.1557 5.1112 4.6544 24 1 -0.8866 5.5869 3.2737 25 1 -1.3475 6.2787 5.5518 26 1 -0.0053 4.3030 5.1326 27 6 -1.0209 0.7992 4.5361 28 6 0.1401 0.2324 4.0620 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6053 -0.2616 -2.1371 33 1 1.7517 -1.7715 -1.2057 34 1 3.3489 -1.6228 -3.2373 35 1 4.5483 -2.3785 -2.1436 36 1 6.1872 -1.0665 -3.0675 37 1 4.9812 -0.2729 -4.1162 38 1 3.3116 1.2644 -2.4051 39 1 4.0685 1.4493 -0.7915 40 1 2.1110 -1.6562 1.1947 41 1 1.1819 2.6991 1.9939 42 1 -0.8890 3.7387 2.8085 43 1 -3.9458 5.5917 4.8181 44 1 -1.6324 0.2665 5.2493 45 1 0.4391 -0.7474 4.4042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771621633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:42 Heat of formation + Delta-G solvation = -124.241659 kcal Electronic energy + Delta-G solvation = -28008.632450 eV Core-core repulsion = 24116.795262 eV Total energy + Delta-G solvation = -3891.837188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.68472 -37.91683 -37.04947 -36.47846 -35.25963 -34.03086 -32.90593 -30.90771 -30.28328 -29.93951 -29.25326 -26.11821 -25.72205 -23.00610 -21.94197 -21.37490 -21.13870 -20.51190 -19.18782 -17.77799 -17.46218 -16.98623 -16.51786 -16.04857 -15.72710 -15.53905 -15.14748 -14.66587 -14.13925 -14.12439 -13.87100 -13.50800 -13.39026 -13.27230 -12.90605 -12.86116 -12.58672 -12.54401 -12.22570 -12.03391 -11.70384 -11.58199 -11.52740 -11.41987 -11.38472 -11.29414 -11.08086 -10.93287 -10.77476 -10.76056 -10.58295 -10.47002 -9.91743 -9.86299 -9.80054 -9.49145 -9.17443 -8.15032 -7.98047 -7.35754 -4.94771 1.10938 1.99177 2.54323 2.90845 3.03674 3.12795 3.56282 3.72982 3.80396 4.09181 4.28929 4.39370 4.53407 4.67833 4.83789 4.90750 5.01990 5.04698 5.10456 5.14869 5.31589 5.45272 5.50029 5.51309 5.60771 5.64241 5.71784 5.76428 5.82358 5.84288 5.87969 5.95884 6.09451 6.30172 6.31741 6.45589 6.49945 6.55150 6.73177 6.87041 7.11990 7.13385 7.23467 7.29332 7.55785 7.81079 7.98302 8.31081 8.40567 9.62997 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.003218 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.133375 B = 8699.821206 C = 9036.111871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.150 3.850 3 H 0.090 0.910 4 C -0.111 4.111 5 C -0.123 4.123 6 H 0.090 0.910 7 C -0.153 4.153 8 C 0.045 3.955 9 O -0.379 6.379 10 C 0.045 3.955 11 N -1.120 6.120 12 S 2.692 3.308 13 O -0.984 6.984 14 O -0.981 6.981 15 C -0.790 4.790 16 C 0.014 3.986 17 C -0.252 4.252 18 C 0.117 3.883 19 C -0.416 4.416 20 H 0.099 0.901 21 C 0.082 3.918 22 N -0.780 5.780 23 Si 0.914 3.086 24 H -0.264 1.264 25 H -0.285 1.285 26 H -0.239 1.239 27 C -0.222 4.222 28 C 0.007 3.993 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.410 0.590 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.293 0.707 44 H 0.106 0.894 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.127 -8.226 -12.971 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.043 3.957 3 H 0.108 0.892 4 C -0.150 4.150 5 C -0.142 4.142 6 H 0.108 0.892 7 C -0.191 4.191 8 C -0.032 4.032 9 O -0.298 6.298 10 C -0.032 4.032 11 N -0.876 5.876 12 S 2.790 3.210 13 O -0.975 6.975 14 O -0.971 6.971 15 C -0.886 4.886 16 C -0.006 4.006 17 C -0.272 4.272 18 C 0.113 3.887 19 C -0.442 4.442 20 H 0.116 0.884 21 C -0.142 4.142 22 N -0.401 5.401 23 Si 0.739 3.261 24 H -0.189 1.189 25 H -0.212 1.212 26 H -0.162 1.162 27 C -0.242 4.242 28 C -0.013 4.013 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.243 0.757 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.946 -7.629 -12.577 17.217 hybrid contribution -0.634 0.143 -0.016 0.650 sum 8.312 -7.487 -12.593 16.844 Atomic orbital electron populations 1.22399 0.94843 1.02794 1.03630 1.20742 0.94236 0.96507 0.84239 0.89206 1.21856 0.93743 1.01633 0.97749 1.22772 0.96359 0.95714 0.99318 0.89173 1.23012 0.98546 0.99474 0.98022 1.23124 0.99278 0.86293 0.94485 1.88930 1.31727 1.44353 1.64752 1.23811 0.84332 0.96699 0.98318 1.55815 1.84235 1.19228 1.28321 1.01279 0.74745 0.72962 0.71997 1.93502 1.82554 1.62943 1.58468 1.93496 1.65819 1.55828 1.81990 1.29236 1.26929 1.09296 1.23105 1.20195 0.93831 0.91969 0.94617 1.21075 0.99299 1.01789 1.05051 1.17899 0.90731 0.91929 0.88147 1.19849 0.98943 0.92004 1.33428 0.88358 1.26376 0.98218 0.98949 0.90655 1.69667 1.25858 1.13846 1.30698 0.86247 0.82156 0.78569 0.79161 1.18916 1.21190 1.16195 1.21025 0.98787 0.98680 1.05738 1.20213 0.92800 0.96507 0.91784 0.92223 0.90273 0.91896 0.90379 0.90774 0.90577 0.90568 0.90215 0.92667 0.92093 0.87844 0.75721 0.87405 0.87673 0.89577 0.87556 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.52 37.16 0.35 -1.72 16 2 C 0.15 1.70 2.86 -67.93 -0.19 1.51 16 3 H 0.09 1.10 6.88 -51.93 -0.36 0.74 16 4 C -0.11 -0.96 4.21 -26.73 -0.11 -1.07 16 5 C -0.12 -1.21 3.04 -88.61 -0.27 -1.48 16 6 H 0.09 1.00 7.62 -51.93 -0.40 0.61 16 7 C -0.15 -1.22 6.60 -25.20 -0.17 -1.38 16 8 C 0.05 0.41 7.69 37.74 0.29 0.70 16 9 O -0.38 -4.85 11.54 -35.23 -0.41 -5.25 16 10 C 0.04 0.51 6.57 38.22 0.25 0.76 16 11 N -1.12 -14.20 4.84 -4.89 -0.02 -14.23 16 12 S 2.69 46.93 5.71 -107.50 -0.61 46.32 16 13 O -0.98 -19.45 17.26 -57.17 -0.99 -20.44 16 14 O -0.98 -19.04 16.59 -57.17 -0.95 -19.99 16 15 C -0.79 -15.59 5.08 -39.29 -0.20 -15.79 16 16 C 0.01 0.29 8.57 -39.66 -0.34 -0.05 16 17 C -0.25 -5.64 7.18 -38.87 -0.28 -5.92 16 18 C 0.12 2.74 5.10 -106.82 -0.55 2.20 16 19 C -0.42 -10.23 9.57 -37.74 -0.36 -10.59 16 20 H 0.10 2.50 8.06 -52.49 -0.42 2.08 16 21 C 0.08 1.95 5.40 -17.34 -0.09 1.86 16 22 N -0.78 -18.83 13.93 55.55 0.77 -18.05 16 23 Si 0.91 19.38 24.52 -169.99 -4.17 15.21 16 24 H -0.26 -5.38 6.71 56.52 0.38 -5.00 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.24 -5.33 6.86 56.52 0.39 -4.94 16 27 C -0.22 -4.84 9.80 -38.87 -0.38 -5.22 16 28 C 0.01 0.14 9.49 -39.66 -0.38 -0.23 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.15 6.18 -51.93 -0.32 0.83 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.58 7.98 -51.93 -0.41 0.16 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.50 7.86 -51.93 -0.41 0.09 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.60 7.93 -51.92 -0.41 0.18 16 39 H 0.10 1.33 8.04 -51.93 -0.42 0.91 16 40 H 0.41 4.23 8.84 -34.46 -0.30 3.93 16 41 H 0.11 2.00 7.59 -52.48 -0.40 1.60 16 42 H 0.11 2.31 4.73 -52.49 -0.25 2.06 16 43 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 44 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.11 1.98 7.60 -52.48 -0.40 1.58 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -29.34 370.27 -9.85 -39.19 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.63 Total: 8.09 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: -2.42 Total: -36.43 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.75 Total: -32.28 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -2.34 Total: -45.69 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.17 Total: 15.21 kcal Atomic # 16 Polarization: 46.93 SS G_CDS: -0.61 Total: 46.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.34 -9.85 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771621633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.050 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds