Wall clock time and date at job start Tue Mar 31 2020 23:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47063 * 2 1 4 4 C 1.53007 * 109.47119 * 240.00456 * 2 1 3 5 5 C 1.52996 * 109.47034 * 175.00149 * 4 2 1 6 6 H 1.08997 * 110.83772 * 51.34775 * 5 4 2 7 7 C 1.54812 * 110.90718 * 175.00075 * 5 4 2 8 8 C 1.54107 * 104.18920 * 139.07408 * 7 5 4 9 9 O 1.43741 * 107.41710 * 1.95579 * 8 7 5 10 10 C 1.44573 * 106.87566 * 333.66963 * 9 8 7 11 11 N 1.46494 * 109.47483 * 120.00386 * 2 1 3 12 12 S 1.65595 * 120.00099 * 265.00343 * 11 2 1 13 13 O 1.42098 * 106.40525 * 178.53784 * 12 11 2 14 14 O 1.42102 * 106.40134 * 311.45569 * 12 11 2 15 15 C 1.76198 * 107.22046 * 64.99555 * 12 11 2 16 16 C 1.38633 * 119.75209 * 269.72797 * 15 12 11 17 17 C 1.37614 * 120.25496 * 179.76247 * 16 15 12 18 18 C 1.40722 * 119.73873 * 0.52972 * 17 16 15 19 19 C 1.41393 * 120.24560 * 179.74230 * 18 17 16 20 20 H 1.07999 * 119.99983 * 150.20371 * 19 18 17 21 21 C 1.39947 * 120.00124 * 330.21659 * 19 18 17 22 22 N 1.30817 * 120.00603 * 161.72828 * 21 19 18 23 23 Si 1.86806 * 119.99841 * 341.72553 * 21 19 18 24 24 H 1.48501 * 109.46843 * 95.41312 * 23 21 19 25 25 H 1.48499 * 109.47125 * 215.41506 * 23 21 19 26 26 H 1.48499 * 109.46752 * 335.41474 * 23 21 19 27 27 C 1.40719 * 119.51205 * 359.72821 * 18 17 16 28 28 C 1.37620 * 119.74291 * 359.97438 * 27 18 17 29 29 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46937 * 299.99530 * 1 2 3 31 31 H 1.08998 * 109.47654 * 59.99842 * 1 2 3 32 32 H 1.09003 * 109.47049 * 54.99664 * 4 2 1 33 33 H 1.09001 * 109.46713 * 294.99689 * 4 2 1 34 34 H 1.08999 * 110.48474 * 20.39927 * 7 5 4 35 35 H 1.08994 * 110.60005 * 257.80642 * 7 5 4 36 36 H 1.08996 * 109.87403 * 121.45287 * 8 7 5 37 37 H 1.09003 * 109.87761 * 242.45726 * 8 7 5 38 38 H 1.09007 * 110.50291 * 281.38447 * 10 9 8 39 39 H 1.08996 * 110.78115 * 158.51101 * 10 9 8 40 40 H 0.97003 * 120.00183 * 84.99619 * 11 2 1 41 41 H 1.08008 * 119.87043 * 359.97438 * 16 15 12 42 42 H 1.07990 * 120.13280 * 180.23317 * 17 16 15 43 43 H 0.96994 * 120.00634 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.12648 * 179.97438 * 27 18 17 45 45 H 1.08003 * 119.87172 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 4.0158 -0.9267 -0.3723 7 6 4.1275 -1.4373 -2.4974 8 6 5.2324 -0.5413 -3.0900 9 8 5.3068 0.6432 -2.2792 10 6 4.0022 0.8270 -1.6839 11 7 2.0184 -0.6906 1.1960 12 16 2.4122 0.1770 2.5504 13 8 2.8124 -0.7699 3.5314 14 8 3.2437 1.2442 2.1156 15 6 0.9275 0.9145 3.1474 16 6 0.5584 2.1748 2.7031 17 6 -0.6015 2.7585 3.1588 18 6 -1.4082 2.0757 4.0879 19 6 -2.5994 2.6677 4.5674 20 1 -3.4314 2.0451 4.8614 21 6 -2.7002 4.0604 4.6609 22 7 -3.8759 4.6264 4.7529 23 14 -1.1557 5.1112 4.6544 24 1 -0.8866 5.5869 3.2737 25 1 -1.3475 6.2787 5.5518 26 1 -0.0053 4.3030 5.1326 27 6 -1.0209 0.7992 4.5361 28 6 0.1401 0.2324 4.0620 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6053 -0.2616 -2.1371 33 1 1.7517 -1.7715 -1.2057 34 1 3.3489 -1.6228 -3.2373 35 1 4.5483 -2.3785 -2.1436 36 1 6.1872 -1.0665 -3.0675 37 1 4.9812 -0.2729 -4.1162 38 1 3.3116 1.2644 -2.4051 39 1 4.0685 1.4493 -0.7915 40 1 2.1110 -1.6562 1.1947 41 1 1.1819 2.6991 1.9939 42 1 -0.8890 3.7387 2.8085 43 1 -3.9458 5.5917 4.8181 44 1 -1.6324 0.2665 5.2493 45 1 0.4391 -0.7474 4.4042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771621633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:41 Heat of formation + Delta-G solvation = -144.583192 kcal Electronic energy + Delta-G solvation = -28009.514525 eV Core-core repulsion = 24116.795262 eV Total energy + Delta-G solvation = -3892.719263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.46607 -39.63026 -38.27934 -37.72955 -36.79553 -35.78664 -33.76113 -32.64269 -31.65534 -31.16781 -30.08094 -27.53456 -26.86099 -23.78138 -23.63798 -22.87364 -22.20992 -21.26684 -20.54683 -19.54789 -18.91774 -18.35285 -17.43003 -17.23076 -17.07429 -16.62042 -16.18058 -15.88807 -15.76307 -15.52545 -15.02898 -14.89843 -14.64801 -14.34431 -14.27368 -14.21895 -13.98072 -13.65853 -13.53400 -13.11897 -13.07209 -13.04013 -12.83873 -12.79249 -12.51129 -12.43820 -12.38756 -12.27424 -12.18423 -11.78088 -11.66748 -11.51817 -11.42080 -11.32784 -11.15289 -10.59212 -10.34569 -9.88445 -9.68032 -9.12956 -6.78182 -0.33282 0.29182 0.81060 1.20148 1.33230 1.41615 2.00680 2.16975 2.43830 2.90700 3.05610 3.32929 3.53444 3.60161 3.81510 3.95525 4.10218 4.15685 4.18847 4.24491 4.25329 4.37714 4.48595 4.57530 4.59239 4.74658 4.80689 4.82313 4.86202 4.90232 4.92270 4.97736 5.02370 5.08924 5.13660 5.18575 5.37536 5.38535 5.44373 5.47269 5.51603 5.54942 5.75557 5.97950 6.04172 6.21327 6.26823 6.52526 6.62075 7.92390 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.003218 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.133375 B = 8699.821206 C = 9036.111871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.144 3.856 3 H 0.080 0.920 4 C -0.101 4.101 5 C -0.124 4.124 6 H 0.074 0.926 7 C -0.144 4.144 8 C 0.036 3.964 9 O -0.411 6.411 10 C 0.038 3.962 11 N -1.101 6.101 12 S 2.719 3.281 13 O -1.003 7.003 14 O -0.998 6.998 15 C -0.786 4.786 16 C 0.013 3.987 17 C -0.266 4.266 18 C 0.107 3.893 19 C -0.455 4.455 20 H 0.073 0.927 21 C 0.057 3.943 22 N -0.815 5.815 23 Si 0.955 3.045 24 H -0.250 1.250 25 H -0.270 1.270 26 H -0.258 1.258 27 C -0.237 4.237 28 C 0.007 3.993 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.425 0.575 41 H 0.129 0.871 42 H 0.107 0.893 43 H 0.303 0.697 44 H 0.113 0.887 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.727 -9.760 -15.325 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.037 3.963 3 H 0.098 0.902 4 C -0.140 4.140 5 C -0.143 4.143 6 H 0.093 0.907 7 C -0.182 4.182 8 C -0.041 4.041 9 O -0.331 6.331 10 C -0.038 4.038 11 N -0.863 5.863 12 S 2.813 3.187 13 O -0.994 6.994 14 O -0.987 6.987 15 C -0.877 4.877 16 C -0.007 4.007 17 C -0.286 4.286 18 C 0.104 3.896 19 C -0.482 4.482 20 H 0.091 0.909 21 C -0.163 4.163 22 N -0.439 5.439 23 Si 0.777 3.223 24 H -0.174 1.174 25 H -0.196 1.196 26 H -0.182 1.182 27 C -0.257 4.257 28 C -0.013 4.013 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.262 0.738 41 H 0.147 0.853 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.131 0.869 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.509 -9.157 -14.914 20.414 hybrid contribution -0.922 0.411 0.583 1.166 sum 9.587 -8.746 -14.331 19.333 Atomic orbital electron populations 1.22381 0.94779 1.03469 1.02959 1.20964 0.94204 0.96484 0.84648 0.90169 1.21830 0.92706 1.02725 0.96722 1.22751 0.97145 0.94935 0.99458 0.90745 1.22996 0.98575 0.99102 0.97521 1.23358 1.00355 0.85572 0.94777 1.88891 1.32618 1.46030 1.65548 1.23869 0.84407 0.97641 0.97881 1.55359 1.83882 1.19938 1.27092 1.00508 0.73474 0.72445 0.72226 1.93476 1.82560 1.63155 1.60184 1.93485 1.65869 1.57088 1.82308 1.29827 1.27030 1.09049 1.21835 1.20468 0.93425 0.92265 0.94517 1.21197 1.00048 1.02133 1.05185 1.18058 0.90622 0.92675 0.88275 1.19778 0.99249 0.92558 1.36630 0.90926 1.26845 1.00002 0.99291 0.90199 1.69668 1.26851 1.14669 1.32665 0.85637 0.78960 0.77657 0.80009 1.17432 1.19640 1.18174 1.21246 0.99717 0.98516 1.06225 1.20509 0.92046 0.97400 0.91315 0.90887 0.93503 0.90072 0.88205 0.88626 0.88423 0.89568 0.89596 0.91349 0.90500 0.90266 0.73808 0.85329 0.87544 0.88628 0.86887 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.61 9.52 71.98 0.69 -2.93 16 2 C 0.14 2.83 2.86 44.99 0.13 2.96 16 3 H 0.08 1.78 6.88 -2.39 -0.02 1.76 16 4 C -0.10 -1.32 4.21 30.60 0.13 -1.19 16 5 C -0.12 -2.06 3.04 -9.49 -0.03 -2.09 16 6 H 0.07 1.47 7.62 -2.39 -0.02 1.45 16 7 C -0.14 -1.76 6.60 31.59 0.21 -1.55 16 8 C 0.04 0.56 7.69 72.36 0.56 1.12 16 9 O -0.41 -9.98 11.54 -148.98 -1.72 -11.70 16 10 C 0.04 0.81 6.57 72.67 0.48 1.28 16 11 N -1.10 -24.80 4.84 -169.40 -0.82 -25.62 16 12 S 2.72 89.19 5.71 -56.49 -0.32 88.86 16 13 O -1.00 -37.41 17.26 -128.00 -2.21 -39.62 16 14 O -1.00 -37.02 16.59 -128.00 -2.12 -39.15 16 15 C -0.79 -29.83 5.08 22.46 0.11 -29.71 16 16 C 0.01 0.51 8.57 22.22 0.19 0.71 16 17 C -0.27 -11.88 7.18 22.73 0.16 -11.72 16 18 C 0.11 5.14 5.10 -21.29 -0.11 5.03 16 19 C -0.45 -23.46 9.57 23.46 0.22 -23.24 16 20 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 21 C 0.06 2.79 5.40 85.26 0.46 3.25 16 22 N -0.82 -40.72 13.93 21.83 0.30 -40.42 16 23 Si 0.95 40.09 24.52 68.60 1.68 41.77 16 24 H -0.25 -9.79 6.71 99.48 0.67 -9.13 16 25 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 26 H -0.26 -11.49 6.86 99.48 0.68 -10.80 16 27 C -0.24 -10.41 9.80 22.73 0.22 -10.19 16 28 C 0.01 0.27 9.49 22.22 0.21 0.48 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.05 1.27 6.18 -2.39 -0.01 1.26 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 0.97 7.98 -2.39 -0.02 0.95 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.79 7.86 -2.39 -0.02 0.78 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 1.32 7.93 -2.38 -0.02 1.30 16 39 H 0.08 2.00 8.04 -2.39 -0.02 1.99 16 40 H 0.43 7.27 8.84 -96.75 -0.85 6.42 16 41 H 0.13 4.55 7.59 -2.91 -0.02 4.53 16 42 H 0.11 4.67 4.73 -2.92 -0.01 4.65 16 43 H 0.30 13.43 8.30 -92.71 -0.77 12.66 16 44 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 45 H 0.13 4.52 7.60 -2.91 -0.02 4.50 16 Total: -1.00 -64.69 370.27 -1.49 -66.18 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.09 Total: 27.49 kcal Atomic # 6 Polarization: -71.43 SS G_CDS: 3.63 Total: -67.79 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -0.52 Total: -66.04 kcal Atomic # 8 Polarization: -84.42 SS G_CDS: -6.05 Total: -90.47 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.68 Total: 41.77 kcal Atomic # 16 Polarization: 89.19 SS G_CDS: -0.32 Total: 88.86 kcal Total: -64.69 -1.49 -66.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771621633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.401 kcal (2) G-P(sol) polarization free energy of solvation -64.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds