Wall clock time and date at job start Tue Mar 31 2020 23:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.48079 * 2 1 4 4 C 1.53098 * 109.49033 * 239.97101 * 2 1 3 5 5 C 1.53176 * 109.16524 * 182.40193 * 4 2 1 6 6 H 1.08997 * 109.61320 * 176.89149 * 5 4 2 7 7 N 1.46496 * 109.54291 * 297.11468 * 5 4 2 8 8 S 1.65601 * 119.99973 * 264.55561 * 7 5 4 9 9 O 1.42101 * 106.40147 * 311.45914 * 8 7 5 10 10 O 1.42097 * 106.40235 * 178.54111 * 8 7 5 11 11 C 1.76201 * 107.21778 * 65.00243 * 8 7 5 12 12 C 1.38633 * 119.75198 * 90.00217 * 11 8 7 13 13 C 1.37617 * 120.24769 * 179.97438 * 12 11 8 14 14 C 1.40712 * 119.74610 * 0.28046 * 13 12 11 15 15 C 1.41400 * 120.24377 * 179.70276 * 14 13 12 16 16 H 1.07999 * 120.00087 * 24.27936 * 15 14 13 17 17 C 1.39947 * 119.99564 * 204.28785 * 15 14 13 18 18 N 1.30821 * 120.00278 * 17.72524 * 17 15 14 19 19 Si 1.86794 * 119.99656 * 197.71822 * 17 15 14 20 20 H 1.48501 * 109.47529 * 60.00194 * 19 17 15 21 21 H 1.48506 * 109.47057 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47379 * 300.00118 * 19 17 15 23 23 C 1.40721 * 119.51082 * 359.46549 * 14 13 12 24 24 C 1.37617 * 119.74346 * 0.50994 * 23 14 13 25 25 C 1.53171 * 109.03419 * 56.98188 * 5 4 2 26 26 C 1.53099 * 109.16384 * 303.01910 * 25 5 4 27 27 H 1.08997 * 109.47765 * 297.62644 * 26 25 5 28 28 C 1.53004 * 109.47907 * 177.59196 * 26 25 5 29 29 O 1.42899 * 109.41693 * 57.61186 * 26 25 5 30 30 H 1.09003 * 109.47501 * 299.97796 * 1 2 3 31 31 H 1.09004 * 109.47149 * 59.97327 * 1 2 3 32 32 H 1.09004 * 109.47372 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.51900 * 62.49408 * 4 2 1 34 34 H 1.08998 * 109.52192 * 302.31429 * 4 2 1 35 35 H 0.97005 * 120.00145 * 84.55324 * 7 5 4 36 36 H 1.07997 * 119.87048 * 359.95531 * 12 11 8 37 37 H 1.08001 * 120.12635 * 179.97438 * 13 12 11 38 38 H 0.96999 * 120.00115 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.12797 * 180.25726 * 23 14 13 40 40 H 1.08001 * 119.87226 * 179.74551 * 24 23 14 41 41 H 1.08998 * 109.52649 * 62.92578 * 25 5 4 42 42 H 1.08999 * 109.52174 * 183.05221 * 25 5 4 43 43 H 1.08995 * 109.46980 * 60.00185 * 28 26 25 44 44 H 1.09000 * 109.47087 * 179.97438 * 28 26 25 45 45 H 1.08993 * 109.47116 * 299.99951 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0408 -0.7223 -1.2495 5 6 3.5713 -0.7706 -1.2120 6 1 3.9408 -1.3315 -2.0705 7 7 4.1058 0.5928 -1.2505 8 16 4.5678 1.2606 -2.6938 9 8 5.3892 0.2962 -3.3375 10 8 5.0022 2.5821 -2.4037 11 6 3.1182 1.4193 -3.6828 12 6 2.3659 2.5821 -3.6193 13 6 1.2323 2.7171 -4.3877 14 6 0.8344 1.6670 -5.2356 15 6 -0.3321 1.7920 -6.0250 16 1 -0.6994 2.7712 -6.2945 17 6 -1.0106 0.6468 -6.4569 18 7 -0.7948 -0.5020 -5.8696 19 14 -2.2247 0.7587 -7.8721 20 1 -1.5235 1.2405 -9.0892 21 1 -2.8055 -0.5829 -8.1333 22 1 -3.3111 1.7075 -7.5185 23 6 1.6087 0.4935 -5.2960 24 6 2.7389 0.3806 -4.5190 25 6 4.0178 -1.4597 0.0810 26 6 3.4307 -0.7090 1.2792 27 1 3.8191 0.3093 1.2959 28 6 3.8227 -1.4262 2.5726 29 8 2.0065 -0.6741 1.1665 30 1 -0.3634 0.5135 0.8902 31 1 -0.3634 0.5143 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7150 -0.1844 -2.1398 34 1 1.6446 -1.7375 -1.2709 35 1 4.1890 1.1045 -0.4306 36 1 2.6706 3.3847 -2.9642 37 1 0.6475 3.6236 -4.3364 38 1 -1.2654 -1.2957 -6.1687 39 1 1.3148 -0.3170 -5.9465 40 1 3.3324 -0.5208 -4.5607 41 1 3.6617 -2.4898 0.0866 42 1 5.1060 -1.4502 0.1418 43 1 4.9089 -1.4536 2.6579 44 1 3.4050 -0.8913 3.4256 45 1 3.4337 -2.4442 2.5557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771638346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:56 Heat of formation + Delta-G solvation = -143.213783 kcal Electronic energy + Delta-G solvation = -28768.493143 eV Core-core repulsion = 24875.833262 eV Total energy + Delta-G solvation = -3892.659881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.86310 -39.37127 -38.16351 -36.80534 -36.43835 -35.78571 -34.59291 -32.09770 -32.00832 -31.26879 -29.94395 -27.64643 -27.26111 -23.93885 -23.26507 -22.92610 -22.70071 -21.37204 -20.10342 -19.39943 -18.67676 -18.20920 -17.41989 -17.21669 -17.18395 -16.63701 -16.11489 -15.83570 -15.50224 -15.18554 -15.03623 -14.92887 -14.25620 -14.09120 -13.97321 -13.81596 -13.61460 -13.55956 -13.28930 -13.13485 -13.03840 -12.94952 -12.88546 -12.86065 -12.79611 -12.68400 -12.55126 -12.50926 -12.07318 -11.97717 -11.84306 -11.53369 -11.34280 -11.23446 -11.17649 -10.52415 -10.18912 -9.74487 -9.52121 -8.85685 -6.62768 -0.31201 0.50790 1.08734 1.36286 1.44171 1.49316 2.11631 2.22313 2.53492 2.77581 2.93046 3.53957 3.56463 3.72043 3.79498 3.85918 3.96612 4.21234 4.25485 4.32260 4.33911 4.39565 4.53505 4.62123 4.65184 4.74264 4.81185 4.88782 4.89865 4.95647 5.01661 5.08281 5.12048 5.18370 5.20748 5.26063 5.29393 5.31018 5.39292 5.54090 5.61836 5.78797 5.94934 6.11139 6.18148 6.38902 6.51091 6.70679 6.83027 8.08536 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.004086 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.885059 B = 6850.656146 C = 8060.130727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.096 3.904 3 H 0.057 0.943 4 C -0.170 4.170 5 C 0.150 3.850 6 H 0.090 0.910 7 N -1.105 6.105 8 S 2.721 3.279 9 O -1.002 7.002 10 O -1.003 7.003 11 C -0.790 4.790 12 C 0.001 3.999 13 C -0.255 4.255 14 C 0.116 3.884 15 C -0.468 4.468 16 H 0.089 0.911 17 C 0.039 3.961 18 N -0.791 5.791 19 Si 0.985 3.015 20 H -0.261 1.261 21 H -0.264 1.264 22 H -0.256 1.256 23 C -0.203 4.203 24 C -0.014 4.014 25 C -0.147 4.147 26 C 0.078 3.922 27 H 0.061 0.939 28 C -0.139 4.139 29 O -0.387 6.387 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.419 0.581 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.298 0.702 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.733 -4.011 11.417 12.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 H 0.075 0.925 4 C -0.209 4.209 5 C 0.043 3.957 6 H 0.108 0.892 7 N -0.866 5.866 8 S 2.817 3.183 9 O -0.992 6.992 10 O -0.994 6.994 11 C -0.884 4.884 12 C -0.019 4.019 13 C -0.276 4.276 14 C 0.113 3.887 15 C -0.494 4.494 16 H 0.107 0.893 17 C -0.181 4.181 18 N -0.413 5.413 19 Si 0.805 3.195 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.180 1.180 23 C -0.223 4.223 24 C -0.034 4.034 25 C -0.186 4.186 26 C 0.020 3.980 27 H 0.079 0.921 28 C -0.196 4.196 29 O -0.308 6.308 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.256 0.744 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.081 0.919 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.415 -4.239 11.212 12.464 hybrid contribution -1.247 0.346 -0.918 1.587 sum 2.168 -3.893 10.295 11.218 Atomic orbital electron populations 1.21722 0.93062 1.02808 1.02305 1.21900 0.95055 0.94892 0.84356 0.92525 1.22725 0.96083 1.02595 0.99489 1.20881 0.92693 0.81437 1.00713 0.89198 1.55477 1.81988 1.24426 1.24683 1.00376 0.73665 0.71621 0.72603 1.93462 1.66772 1.63157 1.75841 1.93463 1.81858 1.38989 1.85064 1.29504 1.27731 1.04855 1.26279 1.20382 0.92145 0.94171 0.95198 1.21224 1.01212 1.01189 1.03934 1.18134 0.91262 0.91445 0.87896 1.20189 1.07610 0.95042 1.26599 0.89334 1.26887 0.99009 0.93773 0.98432 1.69823 1.35180 1.01476 1.34843 0.85180 0.77641 0.79200 0.77464 1.18484 1.18791 1.17995 1.21303 0.96294 1.00258 1.04456 1.20356 0.94507 0.95431 0.93132 1.22481 1.02737 1.00630 0.92722 1.22254 0.80742 0.99075 0.95919 0.92140 1.21760 1.02417 1.00737 0.94714 1.87895 1.21738 1.78153 1.42965 0.91206 0.91995 0.91878 0.91227 0.89967 0.74425 0.86052 0.87421 0.89092 0.87269 0.87026 0.88818 0.88534 0.89237 0.91861 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.56 71.98 0.69 -3.09 16 2 C 0.10 2.58 3.10 30.63 0.10 2.68 16 3 H 0.06 1.54 7.63 -2.39 -0.02 1.52 16 4 C -0.17 -4.91 5.11 30.69 0.16 -4.75 16 5 C 0.15 3.94 3.15 45.11 0.14 4.08 16 6 H 0.09 2.50 7.51 -2.39 -0.02 2.49 16 7 N -1.11 -30.62 4.87 -168.91 -0.82 -31.44 16 8 S 2.72 99.05 5.71 -56.49 -0.32 98.73 16 9 O -1.00 -40.78 16.60 -128.00 -2.12 -42.90 16 10 O -1.00 -40.19 17.26 -128.00 -2.21 -42.40 16 11 C -0.79 -33.10 5.04 22.46 0.11 -32.98 16 12 C 0.00 0.04 9.49 22.22 0.21 0.25 16 13 C -0.26 -11.85 9.80 22.73 0.22 -11.62 16 14 C 0.12 5.83 5.57 -21.29 -0.12 5.71 16 15 C -0.47 -22.86 9.05 23.46 0.21 -22.64 16 16 H 0.09 4.12 7.91 -2.91 -0.02 4.10 16 17 C 0.04 1.76 5.14 85.26 0.44 2.20 16 18 N -0.79 -36.78 10.95 21.83 0.24 -36.54 16 19 Si 0.99 34.03 29.59 68.60 2.03 36.06 16 20 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 21 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 22 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 23 C -0.20 -10.01 8.70 22.73 0.20 -9.81 16 24 C -0.01 -0.64 8.67 22.22 0.19 -0.44 16 25 C -0.15 -2.92 5.11 30.68 0.16 -2.77 16 26 C 0.08 1.54 3.07 30.63 0.09 1.64 16 27 H 0.06 1.14 6.70 -2.39 -0.02 1.12 16 28 C -0.14 -2.09 9.56 71.98 0.69 -1.40 16 29 O -0.39 -9.71 10.05 -148.98 -1.50 -11.20 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.07 2.45 6.26 -2.39 -0.01 2.44 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.42 9.66 7.08 -96.74 -0.68 8.98 16 36 H 0.12 4.66 7.60 -2.91 -0.02 4.64 16 37 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 38 H 0.30 12.40 8.30 -92.71 -0.77 11.63 16 39 H 0.11 5.55 6.16 -2.91 -0.02 5.54 16 40 H 0.11 4.64 7.60 -2.91 -0.02 4.62 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -60.61 370.57 -0.90 -61.50 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: 0.32 Total: 41.17 kcal Atomic # 6 Polarization: -76.46 SS G_CDS: 3.49 Total: -72.97 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.58 Total: -67.98 kcal Atomic # 8 Polarization: -90.68 SS G_CDS: -5.83 Total: -96.51 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.06 kcal Atomic # 16 Polarization: 99.05 SS G_CDS: -0.32 Total: 98.73 kcal Total: -60.61 -0.90 -61.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771638346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.709 kcal (2) G-P(sol) polarization free energy of solvation -60.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds