Wall clock time and date at job start Tue Mar 31 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35695 * 117.00352 * 2 1 4 4 C 1.39123 * 119.88302 * 0.24929 * 3 2 1 5 5 C 1.37575 * 120.17143 * 180.25669 * 4 3 2 6 6 C 1.39877 * 119.92849 * 359.49349 * 5 4 3 7 7 C 1.47313 * 120.11911 * 180.23067 * 6 5 4 8 8 O 1.21514 * 120.00028 * 180.02562 * 7 6 5 9 9 O 1.34759 * 119.99703 * 0.02562 * 7 6 5 10 10 C 1.45201 * 116.99914 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47633 * 330.00522 * 10 9 7 12 12 C 1.53000 * 109.46561 * 90.00418 * 10 9 7 13 13 C 1.50698 * 109.47211 * 209.99857 * 10 9 7 14 14 O 1.21287 * 120.00107 * 0.02562 * 13 10 9 15 15 N 1.34773 * 119.99957 * 180.02562 * 13 10 9 16 16 C 1.46498 * 120.00147 * 0.02562 * 15 13 10 17 17 C 1.46502 * 119.99927 * 180.02562 * 15 13 10 18 18 C 1.50697 * 109.47356 * 90.00200 * 17 15 13 19 19 H 1.08002 * 120.00267 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99881 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00197 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47401 * 59.99616 * 22 20 18 24 24 H 1.48493 * 109.47219 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46895 * 299.99696 * 22 20 18 26 26 C 1.40055 * 119.76732 * 0.25910 * 6 5 4 27 27 F 1.35096 * 120.08337 * 180.02562 * 26 6 5 28 28 C 1.38037 * 119.83232 * 359.97438 * 26 6 5 29 29 H 1.09002 * 109.47592 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47274 * 299.99630 * 1 2 3 31 31 H 1.09004 * 109.47488 * 59.99632 * 1 2 3 32 32 H 1.08002 * 119.91768 * 0.02826 * 4 3 2 33 33 H 1.08002 * 120.04039 * 179.77817 * 5 4 3 34 34 H 1.09001 * 109.47056 * 299.99738 * 12 10 9 35 35 H 1.08998 * 109.47766 * 60.00323 * 12 10 9 36 36 H 1.09005 * 109.46880 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47246 * 90.00058 * 16 15 13 38 38 H 1.08996 * 109.47385 * 210.00032 * 16 15 13 39 39 H 1.09001 * 109.47291 * 330.00019 * 16 15 13 40 40 H 1.09010 * 109.47061 * 209.99854 * 17 15 13 41 41 H 1.08997 * 109.47132 * 329.99689 * 17 15 13 42 42 H 0.96998 * 120.00217 * 180.02562 * 21 20 18 43 43 H 1.07994 * 119.96709 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2850 2.3743 0.0052 5 6 1.9034 3.6032 0.0000 6 6 3.3000 3.6816 0.0000 7 6 3.9666 4.9953 -0.0006 8 8 5.1800 5.0609 -0.0010 9 8 3.2307 6.1242 -0.0005 10 6 3.9546 7.3830 -0.0005 11 1 4.9072 7.2543 0.5132 12 6 4.2087 7.8250 -1.4430 13 6 3.1383 8.4318 0.7099 14 8 2.0535 8.1465 1.1712 15 7 3.6138 9.6869 0.8326 16 6 4.9239 10.0317 0.2749 17 6 2.8205 10.7064 1.5236 18 6 3.1653 10.7022 2.9906 19 1 3.9014 10.0091 3.3704 20 6 2.5402 11.5825 3.8482 21 7 1.6435 12.4261 3.3859 22 14 2.9670 11.5767 5.6668 23 1 4.4118 11.8747 5.8372 24 1 2.1630 12.6102 6.3672 25 1 2.6660 10.2411 6.2416 26 6 4.0624 2.5068 -0.0001 27 9 5.4117 2.5751 0.0005 28 6 3.4318 1.2789 0.0003 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2067 2.3141 0.0098 33 1 1.3113 4.5064 0.0004 34 1 4.7990 7.0664 -1.9569 35 1 3.2561 7.9538 -1.9569 36 1 4.7525 8.7697 -1.4431 37 1 4.8027 10.3732 -0.7531 38 1 5.3749 10.8253 0.8705 39 1 5.5688 9.1532 0.2922 40 1 3.0416 11.6868 1.1013 41 1 1.7600 10.4879 1.3990 42 1 1.2041 13.0457 3.9892 43 1 4.0175 0.3716 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007856502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:08 Heat of formation + Delta-G solvation = -160.676504 kcal Electronic energy + Delta-G solvation = -29133.534414 eV Core-core repulsion = 24673.904116 eV Total energy + Delta-G solvation = -4459.630298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.20359 -40.85895 -40.32420 -38.96490 -37.54320 -36.27970 -34.95988 -32.94901 -31.97694 -31.31778 -30.53449 -28.01643 -27.65651 -26.25950 -24.82552 -23.97219 -23.25270 -22.28951 -20.95125 -19.03875 -18.82974 -18.26117 -17.35327 -16.70818 -16.53724 -16.50070 -16.35059 -16.11984 -15.95234 -15.55162 -15.37561 -15.12458 -14.60443 -14.51778 -14.14733 -13.60285 -13.58498 -13.21145 -13.01910 -12.87160 -12.74180 -12.68946 -12.40385 -12.19254 -12.10713 -11.67927 -11.51575 -11.45152 -11.36407 -11.14748 -10.93950 -10.69222 -10.59085 -10.54170 -10.18132 -9.68054 -9.36760 -8.92751 -8.85193 -8.45641 -7.74431 -6.06999 -4.11993 0.30150 0.74038 2.31088 2.39732 2.56970 3.22738 3.28010 3.31726 3.35635 3.40190 3.85277 3.87516 4.21310 4.40139 4.42718 4.54309 4.60287 4.67443 4.75533 4.82676 4.90425 4.99295 5.02037 5.11345 5.27630 5.35882 5.54214 5.57146 5.65121 5.67925 5.72595 5.77083 5.84322 6.00106 6.11020 6.22335 6.38996 6.72216 6.96836 7.37113 7.44810 7.70292 7.88998 8.18834 8.27521 8.82853 8.97737 9.53109 11.01099 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.002567 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.909539 B =10907.007822 C =11723.702071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.192 3.808 4 C -0.234 4.234 5 C 0.015 3.985 6 C -0.199 4.199 7 C 0.510 3.490 8 O -0.500 6.500 9 O -0.321 6.321 10 C 0.072 3.928 11 H 0.107 0.893 12 C -0.175 4.175 13 C 0.510 3.490 14 O -0.521 6.521 15 N -0.595 5.595 16 C 0.075 3.925 17 C 0.247 3.753 18 C -0.530 4.530 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.207 3.793 27 F -0.108 7.108 28 C -0.208 4.208 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.264 0.736 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -21.701 -11.690 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.220 6.220 3 C 0.145 3.855 4 C -0.252 4.252 5 C -0.004 4.004 6 C -0.201 4.201 7 C 0.355 3.645 8 O -0.389 6.389 9 O -0.236 6.236 10 C 0.013 3.987 11 H 0.125 0.875 12 C -0.233 4.233 13 C 0.294 3.706 14 O -0.396 6.396 15 N -0.329 5.329 16 C -0.069 4.069 17 C 0.129 3.871 18 C -0.568 4.568 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.201 1.201 26 C 0.187 3.813 27 F -0.085 7.085 28 C -0.227 4.227 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.163 0.837 33 H 0.176 0.824 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.588 -21.810 -11.379 24.607 hybrid contribution 0.427 0.267 1.080 1.191 sum 1.015 -21.543 -10.300 23.900 Atomic orbital electron populations 1.23234 0.77151 1.04655 1.02213 1.86045 1.22398 1.26334 1.87210 1.18913 0.91365 0.84655 0.90585 1.21326 1.01171 0.91507 1.11232 1.21304 0.92138 0.98814 0.88113 1.19061 0.94382 0.89597 1.17103 1.20718 0.85632 0.84938 0.73210 1.90877 1.14418 1.87724 1.45897 1.86619 1.39875 1.13712 1.83430 1.22634 0.96261 0.81085 0.98691 0.87498 1.22408 1.03581 1.03495 0.93782 1.19748 0.86878 0.83065 0.80905 1.90696 1.21376 1.79545 1.48016 1.48056 1.19158 1.10041 1.55623 1.21895 0.85246 1.01494 0.98232 1.19348 0.91915 0.84613 0.91254 1.21391 1.23559 1.19095 0.92789 0.92464 1.24926 0.94792 0.95239 0.99051 1.69916 1.26356 1.21400 1.35661 0.86545 0.78334 0.77845 0.84642 1.20203 1.21128 1.20138 1.17182 0.77361 0.91940 0.94856 1.91625 1.27582 1.96974 1.92356 1.20118 0.92521 0.97370 1.12725 0.87664 0.91813 0.91885 0.83707 0.82447 0.91294 0.90980 0.88813 0.92974 0.90289 0.92225 0.94578 0.93641 0.92596 0.82912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.80 101.05 0.99 1.08 16 2 O -0.31 -2.38 10.48 -18.79 -0.20 -2.57 16 3 C 0.19 1.71 6.69 -39.03 -0.26 1.45 16 4 C -0.23 -1.98 9.01 -39.49 -0.36 -2.34 16 5 C 0.01 0.16 9.60 -39.21 -0.38 -0.22 16 6 C -0.20 -2.62 5.88 -104.91 -0.62 -3.24 16 7 C 0.51 8.18 7.86 34.42 0.27 8.45 16 8 O -0.50 -8.87 14.59 -19.28 -0.28 -9.15 16 9 O -0.32 -5.49 8.66 -47.33 -0.41 -5.90 16 10 C 0.07 1.22 2.18 -27.88 -0.06 1.16 16 11 H 0.11 1.78 6.42 -51.93 -0.33 1.45 16 12 C -0.18 -2.31 9.18 37.16 0.34 -1.97 16 13 C 0.51 10.92 7.15 -10.99 -0.08 10.84 16 14 O -0.52 -13.38 16.08 -14.11 -0.23 -13.61 16 15 N -0.60 -12.59 2.86 -182.96 -0.52 -13.11 16 16 C 0.08 1.17 8.80 59.85 0.53 1.69 16 17 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 18 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 19 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 22 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.21 2.53 7.28 -38.97 -0.28 2.25 16 27 F -0.11 -1.49 15.54 2.25 0.03 -1.46 16 28 C -0.21 -2.03 9.95 -39.43 -0.39 -2.42 16 29 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.22 7.64 -51.93 -0.40 -0.17 16 31 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 32 H 0.15 0.84 6.27 -52.49 -0.33 0.51 16 33 H 0.16 1.67 7.60 -52.49 -0.40 1.27 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.08 4.53 -51.93 -0.24 0.85 16 37 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 38 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.06 0.79 6.01 -51.93 -0.31 0.48 16 40 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 41 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -35.67 371.01 -6.26 -41.93 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.22 Total: -2.39 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -0.74 Total: 9.45 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.21 Total: -38.79 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.11 Total: -31.23 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.03 Total: -1.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.67 -6.26 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007856502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.742 kcal (2) G-P(sol) polarization free energy of solvation -35.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds