Wall clock time and date at job start Tue Mar 31 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35695 * 117.00352 * 2 1 4 4 C 1.39123 * 119.88302 * 0.24929 * 3 2 1 5 5 C 1.37575 * 120.17143 * 180.25669 * 4 3 2 6 6 C 1.39877 * 119.92849 * 359.49349 * 5 4 3 7 7 C 1.47313 * 120.11911 * 180.23067 * 6 5 4 8 8 O 1.21514 * 120.00028 * 180.02562 * 7 6 5 9 9 O 1.34759 * 119.99703 * 0.02562 * 7 6 5 10 10 C 1.45201 * 116.99914 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47633 * 330.00522 * 10 9 7 12 12 C 1.53000 * 109.46561 * 90.00418 * 10 9 7 13 13 C 1.50698 * 109.47211 * 209.99857 * 10 9 7 14 14 O 1.21287 * 120.00107 * 0.02562 * 13 10 9 15 15 N 1.34773 * 119.99957 * 180.02562 * 13 10 9 16 16 C 1.46498 * 120.00147 * 0.02562 * 15 13 10 17 17 C 1.46502 * 119.99927 * 180.02562 * 15 13 10 18 18 C 1.50697 * 109.47356 * 90.00200 * 17 15 13 19 19 H 1.08002 * 120.00267 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99881 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00197 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47401 * 59.99616 * 22 20 18 24 24 H 1.48493 * 109.47219 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46895 * 299.99696 * 22 20 18 26 26 C 1.40055 * 119.76732 * 0.25910 * 6 5 4 27 27 F 1.35096 * 120.08337 * 180.02562 * 26 6 5 28 28 C 1.38037 * 119.83232 * 359.97438 * 26 6 5 29 29 H 1.09002 * 109.47592 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47274 * 299.99630 * 1 2 3 31 31 H 1.09004 * 109.47488 * 59.99632 * 1 2 3 32 32 H 1.08002 * 119.91768 * 0.02826 * 4 3 2 33 33 H 1.08002 * 120.04039 * 179.77817 * 5 4 3 34 34 H 1.09001 * 109.47056 * 299.99738 * 12 10 9 35 35 H 1.08998 * 109.47766 * 60.00323 * 12 10 9 36 36 H 1.09005 * 109.46880 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47246 * 90.00058 * 16 15 13 38 38 H 1.08996 * 109.47385 * 210.00032 * 16 15 13 39 39 H 1.09001 * 109.47291 * 330.00019 * 16 15 13 40 40 H 1.09010 * 109.47061 * 209.99854 * 17 15 13 41 41 H 1.08997 * 109.47132 * 329.99689 * 17 15 13 42 42 H 0.96998 * 120.00217 * 180.02562 * 21 20 18 43 43 H 1.07994 * 119.96709 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2850 2.3743 0.0052 5 6 1.9034 3.6032 0.0000 6 6 3.3000 3.6816 0.0000 7 6 3.9666 4.9953 -0.0006 8 8 5.1800 5.0609 -0.0010 9 8 3.2307 6.1242 -0.0005 10 6 3.9546 7.3830 -0.0005 11 1 4.9072 7.2543 0.5132 12 6 4.2087 7.8250 -1.4430 13 6 3.1383 8.4318 0.7099 14 8 2.0535 8.1465 1.1712 15 7 3.6138 9.6869 0.8326 16 6 4.9239 10.0317 0.2749 17 6 2.8205 10.7064 1.5236 18 6 3.1653 10.7022 2.9906 19 1 3.9014 10.0091 3.3704 20 6 2.5402 11.5825 3.8482 21 7 1.6435 12.4261 3.3859 22 14 2.9670 11.5767 5.6668 23 1 4.4118 11.8747 5.8372 24 1 2.1630 12.6102 6.3672 25 1 2.6660 10.2411 6.2416 26 6 4.0624 2.5068 -0.0001 27 9 5.4117 2.5751 0.0005 28 6 3.4318 1.2789 0.0003 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2067 2.3141 0.0098 33 1 1.3113 4.5064 0.0004 34 1 4.7990 7.0664 -1.9569 35 1 3.2561 7.9538 -1.9569 36 1 4.7525 8.7697 -1.4431 37 1 4.8027 10.3732 -0.7531 38 1 5.3749 10.8253 0.8705 39 1 5.5688 9.1532 0.2922 40 1 3.0416 11.6868 1.1013 41 1 1.7600 10.4879 1.3990 42 1 1.2041 13.0457 3.9892 43 1 4.0175 0.3716 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007856502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:08 Heat of formation + Delta-G solvation = -182.906558 kcal Electronic energy + Delta-G solvation = -29134.498382 eV Core-core repulsion = 24673.904116 eV Total energy + Delta-G solvation = -4460.594265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.17150 -42.00707 -41.21359 -40.49592 -38.35817 -37.58331 -36.73644 -34.93929 -33.25345 -32.29385 -31.40855 -29.56881 -28.44772 -27.75032 -26.12056 -25.32969 -24.35941 -23.56801 -22.09515 -20.49511 -19.73489 -19.35197 -18.69735 -18.42353 -17.81114 -17.58858 -17.41154 -17.12490 -17.05976 -16.87567 -16.51188 -16.41987 -15.94365 -15.81519 -15.32475 -14.88202 -14.79603 -14.40510 -14.21937 -14.00516 -13.78596 -13.74438 -13.54652 -13.44695 -13.33453 -13.25948 -13.03575 -12.82838 -12.61990 -12.43763 -12.20825 -12.11910 -12.09456 -11.96891 -11.79273 -11.73562 -10.65546 -10.64499 -10.16848 -9.62976 -9.53248 -8.24590 -6.39040 -0.60601 -0.04652 1.12727 1.28037 1.36113 1.39851 1.47063 1.59748 1.96614 2.28652 2.37863 2.41968 3.02761 3.05353 3.36398 3.41963 3.49371 3.71956 3.74471 3.82491 3.97248 4.08190 4.30103 4.38935 4.42932 4.46071 4.60513 4.61089 4.69209 4.76344 4.83392 4.86218 4.93396 4.94142 4.99987 5.08854 5.15873 5.21682 5.33315 5.49788 5.76763 6.02591 6.11938 6.44162 6.59501 6.69129 7.18140 7.34396 8.82523 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.002567 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.909539 B =10907.007822 C =11723.702071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.313 6.313 3 C 0.203 3.797 4 C -0.220 4.220 5 C 0.012 3.988 6 C -0.225 4.225 7 C 0.509 3.491 8 O -0.524 6.524 9 O -0.333 6.333 10 C 0.079 3.921 11 H 0.112 0.888 12 C -0.166 4.166 13 C 0.502 3.498 14 O -0.576 6.576 15 N -0.599 5.599 16 C 0.067 3.933 17 C 0.261 3.739 18 C -0.548 4.548 19 H 0.050 0.950 20 C 0.011 3.989 21 N -0.925 5.925 22 Si 0.965 3.035 23 H -0.261 1.261 24 H -0.276 1.276 25 H -0.279 1.279 26 C 0.193 3.807 27 F -0.123 7.123 28 C -0.203 4.203 29 H 0.126 0.874 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.177 0.823 33 H 0.155 0.845 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.035 0.965 41 H 0.003 0.997 42 H 0.269 0.731 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.066 -23.358 -12.011 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.225 6.225 3 C 0.155 3.845 4 C -0.239 4.239 5 C -0.007 4.007 6 C -0.227 4.227 7 C 0.356 3.644 8 O -0.415 6.415 9 O -0.249 6.249 10 C 0.021 3.979 11 H 0.130 0.870 12 C -0.223 4.223 13 C 0.289 3.711 14 O -0.456 6.456 15 N -0.331 5.331 16 C -0.075 4.075 17 C 0.140 3.860 18 C -0.587 4.587 19 H 0.069 0.931 20 C -0.188 4.188 21 N -0.564 5.564 22 Si 0.789 3.211 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.205 1.205 26 C 0.172 3.828 27 F -0.101 7.101 28 C -0.223 4.223 29 H 0.144 0.856 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.194 0.806 33 H 0.172 0.828 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.078 0.922 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.869 -23.471 -11.734 26.255 hybrid contribution 0.231 0.657 1.146 1.341 sum 1.100 -22.814 -10.587 25.175 Atomic orbital electron populations 1.23605 0.75008 1.06544 1.03313 1.86064 1.24552 1.25425 1.86464 1.18974 0.91158 0.85358 0.89038 1.21597 1.02682 0.90289 1.09298 1.21327 0.91155 0.99817 0.88371 1.19071 0.95427 0.88346 1.19838 1.21225 0.85520 0.85327 0.72354 1.90844 1.15298 1.87962 1.47438 1.86621 1.40492 1.14098 1.83697 1.22557 0.94807 0.80062 1.00485 0.87032 1.22413 1.04163 1.04812 0.90937 1.20544 0.86590 0.83728 0.80255 1.90655 1.23947 1.80594 1.50376 1.48030 1.20647 1.09310 1.55085 1.22249 0.82726 1.02780 0.99711 1.18853 0.90403 0.85707 0.91028 1.21658 1.23670 1.19112 0.94212 0.93136 1.25805 0.94534 0.94755 1.03728 1.70023 1.27101 1.21948 1.37360 0.85509 0.78959 0.77700 0.78908 1.18576 1.20055 1.20516 1.17358 0.76789 0.92552 0.96051 1.91579 1.28725 1.97091 1.92696 1.20282 0.93279 0.96945 1.11747 0.85589 0.90909 0.90522 0.80600 0.82773 0.89755 0.90944 0.86812 0.89437 0.90622 0.89537 0.94748 0.97893 0.92248 0.81173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.80 113.37 1.11 1.15 16 2 O -0.31 -3.89 10.48 -90.15 -0.94 -4.84 16 3 C 0.20 3.14 6.69 22.63 0.15 3.29 16 4 C -0.22 -3.26 9.01 22.33 0.20 -3.06 16 5 C 0.01 0.24 9.60 22.51 0.22 0.46 16 6 C -0.22 -5.97 5.88 -20.05 -0.12 -6.09 16 7 C 0.51 16.65 7.86 70.21 0.55 17.20 16 8 O -0.52 -18.87 14.59 19.79 0.29 -18.58 16 9 O -0.33 -11.65 8.66 -50.31 -0.44 -12.09 16 10 C 0.08 2.67 2.18 29.85 0.07 2.74 16 11 H 0.11 3.67 6.42 -2.39 -0.02 3.65 16 12 C -0.17 -4.12 9.18 71.98 0.66 -3.46 16 13 C 0.50 22.02 7.15 87.66 0.63 22.65 16 14 O -0.58 -31.03 16.08 15.75 0.25 -30.78 16 15 N -0.60 -25.60 2.86 -851.14 -2.43 -28.04 16 16 C 0.07 1.97 8.80 127.77 1.12 3.10 16 17 C 0.26 13.99 5.16 85.63 0.44 14.43 16 18 C -0.55 -31.76 9.39 25.60 0.24 -31.52 16 19 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 20 C 0.01 0.65 5.46 84.66 0.46 1.11 16 21 N -0.92 -55.55 13.29 21.45 0.28 -55.26 16 22 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 C 0.19 4.69 7.28 22.66 0.16 4.85 16 27 F -0.12 -3.47 15.54 44.97 0.70 -2.77 16 28 C -0.20 -3.68 9.95 22.37 0.22 -3.46 16 29 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.07 0.25 7.64 -2.39 -0.02 0.23 16 31 H 0.08 0.19 7.66 -2.38 -0.02 0.17 16 32 H 0.18 1.44 6.27 -2.91 -0.02 1.42 16 33 H 0.15 3.31 7.60 -2.91 -0.02 3.29 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 2.31 4.53 -2.38 -0.01 2.30 16 37 H 0.09 1.99 6.95 -2.39 -0.02 1.98 16 38 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 39 H 0.09 2.10 6.01 -2.39 -0.01 2.09 16 40 H 0.03 1.83 8.07 -2.38 -0.02 1.81 16 41 H 0.00 0.18 7.42 -2.39 -0.02 0.16 16 42 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -80.87 371.01 6.92 -73.95 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.06 Total: 7.85 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 6.12 Total: 23.41 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.15 Total: -83.30 kcal Atomic # 8 Polarization: -65.44 SS G_CDS: -0.84 Total: -66.28 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.70 Total: -2.77 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -80.87 6.92 -73.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007856502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.959 kcal (2) G-P(sol) polarization free energy of solvation -80.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds