Wall clock time and date at job start Tue Mar 31 2020 22:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35703 * 116.99921 * 2 1 4 4 C 1.39120 * 119.88022 * 0.02562 * 3 2 1 5 5 C 1.37581 * 120.16704 * 179.71698 * 4 3 2 6 6 C 1.39885 * 119.92574 * 0.54053 * 5 4 3 7 7 C 1.47307 * 120.11347 * 179.74050 * 6 5 4 8 8 O 1.21522 * 119.99744 * 179.72099 * 7 6 5 9 9 O 1.34761 * 120.00397 * 359.72549 * 7 6 5 10 10 C 1.45196 * 117.00364 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.47119 * 29.99599 * 10 9 7 12 12 C 1.52999 * 109.47253 * 269.99928 * 10 9 7 13 13 C 1.50696 * 109.47525 * 149.99482 * 10 9 7 14 14 O 1.21280 * 119.99874 * 16.02886 * 13 10 9 15 15 N 1.34773 * 120.00515 * 196.03000 * 13 10 9 16 16 C 1.46501 * 119.99928 * 5.36156 * 15 13 10 17 17 C 1.46499 * 120.00263 * 185.36559 * 15 13 10 18 18 C 1.50709 * 109.47256 * 90.00025 * 17 15 13 19 19 H 1.07995 * 119.99510 * 359.97438 * 18 17 15 20 20 C 1.37870 * 120.00073 * 180.02562 * 18 17 15 21 21 N 1.31515 * 120.00112 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 120.00005 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47172 * 89.99856 * 22 20 18 24 24 H 1.48507 * 109.46931 * 210.00087 * 22 20 18 25 25 H 1.48501 * 109.46829 * 329.99638 * 22 20 18 26 26 C 1.40048 * 119.76548 * 359.46400 * 6 5 4 27 27 F 1.35103 * 120.08044 * 180.28002 * 26 6 5 28 28 C 1.38032 * 119.83480 * 0.25416 * 26 6 5 29 29 H 1.09000 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47180 * 300.00157 * 1 2 3 31 31 H 1.08996 * 109.47155 * 60.00054 * 1 2 3 32 32 H 1.08000 * 119.92181 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.04325 * 180.25499 * 5 4 3 34 34 H 1.09001 * 109.47039 * 306.13300 * 12 10 9 35 35 H 1.09001 * 109.47292 * 66.13451 * 12 10 9 36 36 H 1.08997 * 109.47129 * 186.13513 * 12 10 9 37 37 H 1.09000 * 109.46951 * 84.82835 * 16 15 13 38 38 H 1.08998 * 109.47250 * 204.82432 * 16 15 13 39 39 H 1.09004 * 109.47340 * 324.82656 * 16 15 13 40 40 H 1.08998 * 109.47235 * 209.99557 * 17 15 13 41 41 H 1.08996 * 109.47364 * 329.99976 * 17 15 13 42 42 H 0.97001 * 120.00084 * 180.02562 * 21 20 18 43 43 H 1.08004 * 119.96826 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2849 2.3743 0.0005 5 6 1.9033 3.6033 0.0064 6 6 3.3000 3.6817 0.0004 7 6 3.9664 4.9954 0.0009 8 8 5.1798 5.0611 0.0008 9 8 3.2305 6.1244 0.0015 10 6 3.9543 7.3831 0.0026 11 1 4.9071 7.2548 -0.5111 12 6 4.2082 7.8242 1.4454 13 6 3.1383 8.4324 -0.7073 14 8 1.9571 8.2471 -0.9108 15 7 3.7210 9.5768 -1.1162 16 6 5.1688 9.7521 -0.9768 17 6 2.9067 10.6455 -1.7001 18 6 2.4353 11.5715 -0.6084 19 1 2.7141 11.3824 0.4176 20 6 1.6474 12.6592 -0.9195 21 7 1.2357 13.4669 0.0332 22 14 1.1646 12.9857 -2.6944 23 1 -0.1113 12.2887 -2.9965 24 1 0.9915 14.4463 -2.8995 25 1 2.2300 12.4818 -3.5978 26 6 4.0623 2.5069 -0.0002 27 9 5.4116 2.5753 -0.0002 28 6 3.4317 1.2791 -0.0002 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2066 2.3140 0.0014 33 1 1.3113 4.5065 0.0110 34 1 3.2641 7.8473 1.9898 35 1 4.8878 7.1206 1.9263 36 1 4.6535 8.8191 1.4481 37 1 5.6728 9.3081 -1.8352 38 1 5.4030 10.8155 -0.9279 39 1 5.5077 9.2630 -0.0635 40 1 3.5042 11.2061 -2.4190 41 1 2.0442 10.2106 -2.2051 42 1 0.6810 14.2320 -0.1857 43 1 4.0176 0.3717 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007856506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:12 Heat of formation + Delta-G solvation = -160.109468 kcal Electronic energy + Delta-G solvation = -29124.133074 eV Core-core repulsion = 24664.527365 eV Total energy + Delta-G solvation = -4459.605709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.24101 -40.89912 -40.36302 -39.04456 -37.58494 -36.34514 -35.01768 -32.81593 -32.05877 -31.39335 -30.57776 -28.42011 -28.01086 -26.19833 -24.92754 -23.96910 -23.21831 -22.11067 -20.92628 -19.05646 -18.80958 -18.29202 -17.39458 -16.99510 -16.75519 -16.53384 -16.41296 -16.18729 -16.05442 -15.57729 -15.38670 -15.15620 -14.70940 -14.52123 -14.13922 -13.69951 -13.47447 -13.21332 -13.08740 -12.88594 -12.75182 -12.71309 -12.41059 -12.28113 -12.24636 -11.92971 -11.57044 -11.53829 -11.49274 -11.41324 -10.97530 -10.73942 -10.62251 -10.52596 -10.18817 -9.58713 -9.40385 -9.05109 -8.89043 -8.62769 -7.80890 -6.12696 -4.12292 0.26169 0.70442 2.26970 2.33677 2.53582 3.12924 3.22172 3.27187 3.33194 3.35158 3.75525 3.83638 4.18063 4.36297 4.36948 4.50982 4.57687 4.65047 4.72043 4.75659 4.87131 4.99391 5.00520 5.08185 5.20813 5.36033 5.48987 5.53759 5.65836 5.69644 5.71141 5.78108 5.79073 6.05140 6.07720 6.23507 6.34328 6.63139 6.68999 6.88259 7.21931 7.54887 7.65068 8.08651 8.41107 8.78454 8.90376 9.46983 11.00403 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.002488 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.615145 B =11252.345757 C =12291.773940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.192 3.808 4 C -0.234 4.234 5 C 0.014 3.986 6 C -0.200 4.200 7 C 0.510 3.490 8 O -0.500 6.500 9 O -0.322 6.322 10 C 0.074 3.926 11 H 0.105 0.895 12 C -0.165 4.165 13 C 0.514 3.486 14 O -0.521 6.521 15 N -0.592 5.592 16 C 0.073 3.927 17 C 0.216 3.784 18 C -0.532 4.532 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.265 1.265 26 C 0.207 3.793 27 F -0.108 7.108 28 C -0.208 4.208 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.265 0.735 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -25.691 0.461 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.220 6.220 3 C 0.145 3.855 4 C -0.252 4.252 5 C -0.004 4.004 6 C -0.202 4.202 7 C 0.355 3.645 8 O -0.389 6.389 9 O -0.237 6.237 10 C 0.015 3.985 11 H 0.122 0.878 12 C -0.223 4.223 13 C 0.299 3.701 14 O -0.397 6.397 15 N -0.325 5.325 16 C -0.071 4.071 17 C 0.096 3.904 18 C -0.571 4.571 19 H 0.094 0.906 20 C -0.129 4.129 21 N -0.534 5.534 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.190 1.190 26 C 0.187 3.813 27 F -0.085 7.085 28 C -0.227 4.227 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.163 0.837 33 H 0.176 0.824 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.797 -25.734 0.372 25.889 hybrid contribution -0.129 0.571 -0.769 0.967 sum 2.668 -25.164 -0.397 25.308 Atomic orbital electron populations 1.23239 0.77116 1.04681 1.02227 1.86051 1.22423 1.26318 1.87186 1.18918 0.91370 0.84666 0.90523 1.21334 1.01197 0.91504 1.11195 1.21320 0.92142 0.98843 0.88103 1.19057 0.94377 0.89580 1.17221 1.20734 0.85638 0.84936 0.73234 1.90879 1.14393 1.87731 1.45890 1.86640 1.39902 1.13727 1.83478 1.22651 0.95857 0.80838 0.99111 0.87754 1.22175 1.03719 1.02974 0.93409 1.19753 0.87876 0.82608 0.79895 1.90680 1.15577 1.78196 1.55205 1.47735 1.07911 1.15926 1.60908 1.21875 0.80892 1.03780 1.00556 1.19744 0.91169 0.84841 0.94675 1.21314 1.32187 1.08633 0.94917 0.90632 1.24847 0.95143 0.95642 0.97301 1.69892 1.35685 1.15519 1.32302 0.86851 0.79864 0.77590 0.85402 1.19845 1.21019 1.19022 1.17177 0.77356 0.91931 0.94857 1.91628 1.27575 1.96974 1.92360 1.20120 0.92524 0.97383 1.12714 0.87642 0.91838 0.91834 0.83687 0.82409 0.90478 0.91108 0.89301 0.93236 0.89850 0.91851 0.94830 0.94277 0.92490 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.27 10.48 -18.81 -0.20 -2.47 16 3 C 0.19 1.63 6.69 -39.03 -0.26 1.37 16 4 C -0.23 -1.89 9.01 -39.49 -0.36 -2.25 16 5 C 0.01 0.15 9.60 -39.21 -0.38 -0.23 16 6 C -0.20 -2.52 5.88 -104.92 -0.62 -3.13 16 7 C 0.51 7.83 7.86 34.42 0.27 8.10 16 8 O -0.50 -8.47 14.59 -19.28 -0.28 -8.76 16 9 O -0.32 -5.36 8.71 -47.18 -0.41 -5.77 16 10 C 0.07 1.24 2.14 -27.89 -0.06 1.18 16 11 H 0.10 1.61 6.32 -51.92 -0.33 1.28 16 12 C -0.17 -2.43 9.19 37.16 0.34 -2.09 16 13 C 0.51 10.75 6.95 -10.99 -0.08 10.67 16 14 O -0.52 -12.92 16.13 -13.54 -0.22 -13.14 16 15 N -0.59 -12.19 2.86 -182.95 -0.52 -12.71 16 16 C 0.07 1.12 9.79 59.85 0.59 1.70 16 17 C 0.22 5.22 4.25 -5.19 -0.02 5.20 16 18 C -0.53 -15.00 9.94 -34.44 -0.34 -15.34 16 19 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 20 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 21 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 22 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 26 C 0.21 2.41 7.28 -38.98 -0.28 2.13 16 27 F -0.11 -1.43 15.54 2.25 0.03 -1.39 16 28 C -0.21 -1.93 9.95 -39.43 -0.39 -2.32 16 29 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 31 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 32 H 0.15 0.79 6.27 -52.49 -0.33 0.46 16 33 H 0.16 1.62 7.60 -52.49 -0.40 1.22 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.25 6.33 -51.93 -0.33 0.93 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.28 8.03 -51.93 -0.42 0.87 16 39 H 0.06 0.83 4.92 -51.93 -0.26 0.58 16 40 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 41 H 0.04 1.01 6.78 -51.93 -0.35 0.66 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -35.84 369.97 -5.89 -41.73 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.28 Total: -1.31 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -0.70 Total: 8.08 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.25 Total: -39.16 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.11 Total: -30.14 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.03 Total: -1.39 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.84 -5.89 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007856506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.377 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds