Wall clock time and date at job start Tue Mar 31 2020 22:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35703 * 116.99921 * 2 1 4 4 C 1.39120 * 119.88022 * 0.02562 * 3 2 1 5 5 C 1.37581 * 120.16704 * 179.71698 * 4 3 2 6 6 C 1.39885 * 119.92574 * 0.54053 * 5 4 3 7 7 C 1.47307 * 120.11347 * 179.74050 * 6 5 4 8 8 O 1.21522 * 119.99744 * 179.72099 * 7 6 5 9 9 O 1.34761 * 120.00397 * 359.72549 * 7 6 5 10 10 C 1.45196 * 117.00364 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.47119 * 29.99599 * 10 9 7 12 12 C 1.52999 * 109.47253 * 269.99928 * 10 9 7 13 13 C 1.50696 * 109.47525 * 149.99482 * 10 9 7 14 14 O 1.21280 * 119.99874 * 16.02886 * 13 10 9 15 15 N 1.34773 * 120.00515 * 196.03000 * 13 10 9 16 16 C 1.46501 * 119.99928 * 5.36156 * 15 13 10 17 17 C 1.46499 * 120.00263 * 185.36559 * 15 13 10 18 18 C 1.50709 * 109.47256 * 90.00025 * 17 15 13 19 19 H 1.07995 * 119.99510 * 359.97438 * 18 17 15 20 20 C 1.37870 * 120.00073 * 180.02562 * 18 17 15 21 21 N 1.31515 * 120.00112 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 120.00005 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47172 * 89.99856 * 22 20 18 24 24 H 1.48507 * 109.46931 * 210.00087 * 22 20 18 25 25 H 1.48501 * 109.46829 * 329.99638 * 22 20 18 26 26 C 1.40048 * 119.76548 * 359.46400 * 6 5 4 27 27 F 1.35103 * 120.08044 * 180.28002 * 26 6 5 28 28 C 1.38032 * 119.83480 * 0.25416 * 26 6 5 29 29 H 1.09000 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47180 * 300.00157 * 1 2 3 31 31 H 1.08996 * 109.47155 * 60.00054 * 1 2 3 32 32 H 1.08000 * 119.92181 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.04325 * 180.25499 * 5 4 3 34 34 H 1.09001 * 109.47039 * 306.13300 * 12 10 9 35 35 H 1.09001 * 109.47292 * 66.13451 * 12 10 9 36 36 H 1.08997 * 109.47129 * 186.13513 * 12 10 9 37 37 H 1.09000 * 109.46951 * 84.82835 * 16 15 13 38 38 H 1.08998 * 109.47250 * 204.82432 * 16 15 13 39 39 H 1.09004 * 109.47340 * 324.82656 * 16 15 13 40 40 H 1.08998 * 109.47235 * 209.99557 * 17 15 13 41 41 H 1.08996 * 109.47364 * 329.99976 * 17 15 13 42 42 H 0.97001 * 120.00084 * 180.02562 * 21 20 18 43 43 H 1.08004 * 119.96826 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2849 2.3743 0.0005 5 6 1.9033 3.6033 0.0064 6 6 3.3000 3.6817 0.0004 7 6 3.9664 4.9954 0.0009 8 8 5.1798 5.0611 0.0008 9 8 3.2305 6.1244 0.0015 10 6 3.9543 7.3831 0.0026 11 1 4.9071 7.2548 -0.5111 12 6 4.2082 7.8242 1.4454 13 6 3.1383 8.4324 -0.7073 14 8 1.9571 8.2471 -0.9108 15 7 3.7210 9.5768 -1.1162 16 6 5.1688 9.7521 -0.9768 17 6 2.9067 10.6455 -1.7001 18 6 2.4353 11.5715 -0.6084 19 1 2.7141 11.3824 0.4176 20 6 1.6474 12.6592 -0.9195 21 7 1.2357 13.4669 0.0332 22 14 1.1646 12.9857 -2.6944 23 1 -0.1113 12.2887 -2.9965 24 1 0.9915 14.4463 -2.8995 25 1 2.2300 12.4818 -3.5978 26 6 4.0623 2.5069 -0.0002 27 9 5.4116 2.5753 -0.0002 28 6 3.4317 1.2791 -0.0002 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2066 2.3140 0.0014 33 1 1.3113 4.5065 0.0110 34 1 3.2641 7.8473 1.9898 35 1 4.8878 7.1206 1.9263 36 1 4.6535 8.8191 1.4481 37 1 5.6728 9.3081 -1.8352 38 1 5.4030 10.8155 -0.9279 39 1 5.5077 9.2630 -0.0635 40 1 3.5042 11.2061 -2.4190 41 1 2.0442 10.2106 -2.2051 42 1 0.6810 14.2320 -0.1857 43 1 4.0176 0.3717 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007856506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:11 Heat of formation + Delta-G solvation = -182.954088 kcal Electronic energy + Delta-G solvation = -29125.123691 eV Core-core repulsion = 24664.527365 eV Total energy + Delta-G solvation = -4460.596326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.16112 -42.01501 -41.21548 -40.52413 -38.36310 -37.60084 -36.73790 -34.81838 -33.36958 -32.31222 -31.41533 -30.26478 -28.45045 -27.64018 -26.18322 -25.18885 -24.26866 -23.46735 -22.06611 -20.42582 -19.72677 -19.34862 -19.13707 -18.44893 -17.84177 -17.63335 -17.45358 -17.12358 -16.96684 -16.90954 -16.50470 -16.28463 -16.10363 -15.81571 -15.31656 -14.93825 -14.77314 -14.44445 -14.36246 -14.00731 -13.78997 -13.73378 -13.68958 -13.48859 -13.39500 -13.25711 -13.22764 -12.89039 -12.65094 -12.45691 -12.12357 -12.09326 -12.04373 -11.99608 -11.78915 -11.73970 -10.83026 -10.71414 -10.16363 -9.62689 -9.51992 -8.33653 -6.39309 -0.60339 -0.04223 1.10677 1.26756 1.34818 1.38102 1.46384 1.51338 1.96931 2.28234 2.31666 2.38808 3.00476 3.03057 3.33333 3.40788 3.49462 3.72065 3.72866 3.78249 3.97621 4.08596 4.25044 4.38965 4.42202 4.42925 4.53013 4.59569 4.65182 4.75830 4.76690 4.83477 4.84217 4.90646 4.93689 4.99830 5.04689 5.16269 5.33764 5.42708 5.50513 6.12104 6.21185 6.41599 6.53219 6.62264 7.11381 7.27249 8.82808 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.002488 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.615145 B =11252.345757 C =12291.773940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.313 6.313 3 C 0.203 3.797 4 C -0.221 4.221 5 C 0.011 3.989 6 C -0.224 4.224 7 C 0.510 3.490 8 O -0.522 6.522 9 O -0.334 6.334 10 C 0.081 3.919 11 H 0.123 0.877 12 C -0.159 4.159 13 C 0.506 3.494 14 O -0.571 6.571 15 N -0.597 5.597 16 C 0.064 3.936 17 C 0.222 3.778 18 C -0.538 4.538 19 H 0.034 0.966 20 C 0.013 3.987 21 N -0.943 5.943 22 Si 0.945 3.055 23 H -0.276 1.276 24 H -0.276 1.276 25 H -0.238 1.238 26 C 0.194 3.806 27 F -0.122 7.122 28 C -0.203 4.203 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.176 0.824 33 H 0.154 0.846 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.022 0.978 42 H 0.269 0.731 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -27.690 -0.801 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.225 6.225 3 C 0.155 3.845 4 C -0.239 4.239 5 C -0.007 4.007 6 C -0.226 4.226 7 C 0.356 3.644 8 O -0.413 6.413 9 O -0.250 6.250 10 C 0.023 3.977 11 H 0.140 0.860 12 C -0.217 4.217 13 C 0.293 3.707 14 O -0.450 6.450 15 N -0.329 5.329 16 C -0.077 4.077 17 C 0.101 3.899 18 C -0.576 4.576 19 H 0.052 0.948 20 C -0.185 4.185 21 N -0.583 5.583 22 Si 0.768 3.232 23 H -0.201 1.201 24 H -0.201 1.201 25 H -0.161 1.161 26 C 0.174 3.826 27 F -0.100 7.100 28 C -0.223 4.223 29 H 0.144 0.856 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.193 0.807 33 H 0.172 0.828 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.912 -27.755 -0.883 27.922 hybrid contribution -0.230 1.041 -0.285 1.104 sum 2.682 -26.714 -1.168 26.874 Atomic orbital electron populations 1.23602 0.75026 1.06529 1.03300 1.86068 1.24531 1.25461 1.86468 1.18980 0.91189 0.85333 0.89037 1.21594 1.02660 0.90330 1.09327 1.21332 0.91215 0.99774 0.88396 1.19054 0.95354 0.88354 1.19865 1.21217 0.85533 0.85238 0.72391 1.90849 1.15177 1.87923 1.47304 1.86649 1.40480 1.14044 1.83778 1.22547 0.95317 0.80082 0.99733 0.85967 1.22160 1.03615 1.03831 0.92062 1.20492 0.87686 0.83317 0.79219 1.90640 1.17829 1.79408 1.57123 1.47816 1.09806 1.15002 1.60286 1.22199 0.77858 1.04489 1.03173 1.19463 0.91652 0.85115 0.93696 1.21520 1.32274 1.09565 0.94252 0.94754 1.25807 0.95003 0.95337 1.02343 1.70038 1.36828 1.16399 1.34988 0.85752 0.79918 0.77808 0.79717 1.20143 1.20069 1.16110 1.17337 0.76802 0.92496 0.95981 1.91584 1.28663 1.97085 1.92684 1.20283 0.93241 0.97001 1.11734 0.85613 0.90671 0.90789 0.80698 0.82817 0.91735 0.88973 0.88743 0.90099 0.89892 0.89641 0.92517 0.95952 0.92218 0.81180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 -3.67 10.48 -90.24 -0.95 -4.61 16 3 C 0.20 2.95 6.69 22.63 0.15 3.10 16 4 C -0.22 -3.07 9.01 22.33 0.20 -2.87 16 5 C 0.01 0.22 9.60 22.51 0.22 0.44 16 6 C -0.22 -5.62 5.88 -20.05 -0.12 -5.74 16 7 C 0.51 15.77 7.86 70.21 0.55 16.32 16 8 O -0.52 -17.68 14.59 19.77 0.29 -17.40 16 9 O -0.33 -11.26 8.71 -50.48 -0.44 -11.70 16 10 C 0.08 2.71 2.14 29.85 0.06 2.77 16 11 H 0.12 3.61 6.32 -2.38 -0.02 3.60 16 12 C -0.16 -4.62 9.19 71.98 0.66 -3.96 16 13 C 0.51 21.40 6.95 87.66 0.61 22.00 16 14 O -0.57 -29.18 16.13 15.23 0.25 -28.94 16 15 N -0.60 -24.39 2.86 -851.13 -2.43 -26.82 16 16 C 0.06 1.87 9.79 127.77 1.25 3.12 16 17 C 0.22 10.71 4.25 85.64 0.36 11.07 16 18 C -0.54 -31.00 9.94 25.60 0.25 -30.75 16 19 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16 20 C 0.01 0.78 5.47 84.65 0.46 1.25 16 21 N -0.94 -58.72 13.96 21.44 0.30 -58.42 16 22 Si 0.95 43.71 27.47 68.60 1.88 45.60 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 26 C 0.19 4.44 7.28 22.66 0.16 4.61 16 27 F -0.12 -3.25 15.54 44.97 0.70 -2.56 16 28 C -0.20 -3.45 9.95 22.37 0.22 -3.23 16 29 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.07 0.17 7.65 -2.38 -0.02 0.16 16 31 H 0.07 0.19 7.65 -2.39 -0.02 0.17 16 32 H 0.18 1.32 6.27 -2.91 -0.02 1.30 16 33 H 0.15 3.17 7.60 -2.91 -0.02 3.14 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 2.60 6.33 -2.39 -0.02 2.59 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 2.42 8.03 -2.39 -0.02 2.40 16 39 H 0.09 2.09 4.92 -2.38 -0.01 2.07 16 40 H 0.06 2.47 7.13 -2.39 -0.02 2.46 16 41 H 0.02 1.16 6.78 -2.39 -0.02 1.14 16 42 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 43 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -80.88 369.97 6.77 -74.11 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.00 Total: 11.45 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 6.17 Total: 19.28 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.13 Total: -85.24 kcal Atomic # 8 Polarization: -61.79 SS G_CDS: -0.85 Total: -62.64 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.70 Total: -2.56 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Total: -80.88 6.77 -74.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007856506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.843 kcal (2) G-P(sol) polarization free energy of solvation -80.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds