Wall clock time and date at job start Tue Mar 31 2020 22:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35748 * 116.99759 * 2 1 4 4 C 1.38942 * 119.91718 * 0.02562 * 3 2 1 5 5 C 1.37716 * 120.12173 * 179.76507 * 4 3 2 6 6 C 1.39774 * 119.94535 * 0.47250 * 5 4 3 7 7 C 1.47472 * 120.08780 * 179.78822 * 6 5 4 8 8 O 1.21507 * 120.00200 * 179.72342 * 7 6 5 9 9 O 1.34749 * 119.99444 * 359.72075 * 7 6 5 10 10 C 1.45204 * 116.99914 * 179.97438 * 9 7 6 11 11 H 1.09009 * 109.47356 * 330.00597 * 10 9 7 12 12 C 1.53003 * 109.46975 * 90.00013 * 10 9 7 13 13 C 1.50693 * 109.47584 * 210.00586 * 10 9 7 14 14 O 1.21283 * 119.99993 * 346.83266 * 13 10 9 15 15 N 1.34777 * 120.00459 * 166.83663 * 13 10 9 16 16 C 1.46500 * 119.99806 * 4.66120 * 15 13 10 17 17 C 1.46495 * 119.99998 * 184.38220 * 15 13 10 18 18 C 1.50704 * 109.47321 * 270.27431 * 17 15 13 19 19 H 1.07999 * 120.00020 * 0.02562 * 18 17 15 20 20 C 1.37876 * 119.99771 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99636 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00189 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47145 * 90.00156 * 22 20 18 24 24 H 1.48506 * 109.46992 * 209.99801 * 22 20 18 25 25 H 1.48498 * 109.47180 * 329.99851 * 22 20 18 26 26 C 1.39800 * 119.82788 * 359.51315 * 6 5 4 27 27 C 1.37870 * 119.87894 * 0.24932 * 26 6 5 28 28 F 1.35099 * 119.97336 * 179.97438 * 27 26 6 29 29 H 1.08996 * 109.47441 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47224 * 300.00169 * 1 2 3 31 31 H 1.09006 * 109.47219 * 60.00495 * 1 2 3 32 32 H 1.07998 * 119.93631 * 0.03353 * 4 3 2 33 33 H 1.08002 * 120.02539 * 180.26121 * 5 4 3 34 34 H 1.08995 * 109.46883 * 49.82216 * 12 10 9 35 35 H 1.08998 * 109.47165 * 169.82309 * 12 10 9 36 36 H 1.08997 * 109.47212 * 289.82301 * 12 10 9 37 37 H 1.08995 * 109.47190 * 266.44608 * 16 15 13 38 38 H 1.09003 * 109.47306 * 26.44211 * 16 15 13 39 39 H 1.09001 * 109.47589 * 146.44208 * 16 15 13 40 40 H 1.09000 * 109.47321 * 30.27586 * 17 15 13 41 41 H 1.09005 * 109.47230 * 150.27868 * 17 15 13 42 42 H 0.97001 * 119.99626 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.05896 * 180.23386 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2868 2.3737 0.0005 5 6 1.9076 3.6030 0.0054 6 6 3.3032 3.6799 -0.0001 7 6 3.9712 4.9946 0.0004 8 8 5.1845 5.0597 0.0006 9 8 3.2359 6.1238 0.0005 10 6 3.9604 7.3822 0.0016 11 1 4.9128 7.2528 0.5158 12 6 4.2157 7.8249 -1.4406 13 6 3.1444 8.4311 0.7121 14 8 1.9754 8.2246 0.9605 15 7 3.7136 9.5988 1.0714 16 6 5.0954 9.8904 0.6821 17 6 2.9484 10.5788 1.8461 18 6 2.2217 11.5056 0.9059 19 1 2.3196 11.3771 -0.1619 20 6 1.4309 12.5168 1.4090 21 7 0.7963 13.3253 0.5884 22 14 1.2610 12.7385 3.2560 23 1 2.3182 13.6604 3.7432 24 1 -0.0746 13.3096 3.5651 25 1 1.4040 11.4220 3.9278 26 6 4.0642 2.5072 -0.0003 27 6 3.4353 1.2803 -0.0003 28 9 4.1689 0.1458 -0.0010 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 0.2085 2.3144 0.0015 33 1 1.3165 4.5069 0.0101 34 1 3.2841 7.7802 -2.0047 35 1 4.5945 8.8469 -1.4453 36 1 4.9502 7.1630 -1.8992 37 1 5.7701 9.5884 1.4831 38 1 5.3408 9.3403 -0.2263 39 1 5.2037 10.9596 0.4997 40 1 2.2256 10.0599 2.4757 41 1 3.6276 11.1567 2.4730 42 1 0.2403 14.0370 0.9424 43 1 5.1428 2.5623 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008176816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:15 Heat of formation + Delta-G solvation = -155.655080 kcal Electronic energy + Delta-G solvation = -28903.114507 eV Core-core repulsion = 24443.701954 eV Total energy + Delta-G solvation = -4459.412553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.14694 -40.98950 -40.29232 -39.12336 -37.73292 -36.42053 -35.05034 -32.87109 -31.92049 -31.27100 -30.82570 -28.37826 -28.03283 -26.33325 -24.96717 -23.88440 -23.19220 -22.23434 -20.96241 -19.08816 -18.84672 -18.39416 -17.48096 -17.00374 -16.74887 -16.66282 -16.60172 -16.09278 -15.77818 -15.46864 -15.35405 -15.19711 -14.74671 -14.70550 -14.24542 -13.83657 -13.58102 -13.25257 -13.01878 -12.99831 -12.76573 -12.53034 -12.37214 -12.34395 -12.24166 -11.84770 -11.69968 -11.63668 -11.53966 -11.38759 -10.94875 -10.80303 -10.71927 -10.54864 -10.14773 -9.58570 -9.48825 -9.05579 -8.76226 -8.62795 -7.82365 -6.12122 -4.11296 0.23007 0.67183 2.18456 2.27479 2.56358 3.11550 3.22242 3.24481 3.32888 3.36637 3.66747 3.78724 4.19495 4.36477 4.40439 4.41824 4.66152 4.66863 4.68502 4.71065 4.92389 4.97278 5.02294 5.03095 5.20828 5.26659 5.37001 5.46751 5.62269 5.65126 5.70565 5.77809 5.79650 6.01654 6.03746 6.21328 6.27831 6.58406 6.67784 6.88189 7.20093 7.54935 7.58134 8.07541 8.41356 8.78225 8.91333 9.47471 11.01148 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018045 B = 0.002356 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.299357 B =11881.844878 C =12827.042613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C 0.132 3.868 4 C -0.197 4.197 5 C -0.022 4.022 6 C -0.135 4.135 7 C 0.513 3.487 8 O -0.506 6.506 9 O -0.320 6.320 10 C 0.074 3.926 11 H 0.106 0.894 12 C -0.173 4.173 13 C 0.510 3.490 14 O -0.516 6.516 15 N -0.591 5.591 16 C 0.065 3.935 17 C 0.217 3.783 18 C -0.529 4.529 19 H 0.075 0.925 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.875 3.125 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.264 1.264 26 C -0.050 4.050 27 C 0.055 3.945 28 F -0.127 7.127 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.030 0.970 42 H 0.265 0.735 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 -23.939 -2.359 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.217 6.217 3 C 0.084 3.916 4 C -0.216 4.216 5 C -0.040 4.040 6 C -0.136 4.136 7 C 0.358 3.642 8 O -0.396 6.396 9 O -0.235 6.235 10 C 0.015 3.985 11 H 0.124 0.876 12 C -0.230 4.230 13 C 0.295 3.705 14 O -0.391 6.391 15 N -0.325 5.325 16 C -0.079 4.079 17 C 0.097 3.903 18 C -0.568 4.568 19 H 0.094 0.906 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.701 3.299 23 H -0.201 1.201 24 H -0.209 1.209 25 H -0.188 1.188 26 C -0.069 4.069 27 C 0.036 3.964 28 F -0.106 7.106 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.392 -24.058 -2.213 24.556 hybrid contribution -0.111 0.336 0.853 0.923 sum 4.281 -23.722 -1.360 24.143 Atomic orbital electron populations 1.23244 0.77135 1.04753 1.02139 1.86115 1.22422 1.25641 1.87540 1.19365 0.90860 0.85879 0.95476 1.21190 1.01014 0.90874 1.08479 1.21516 0.93228 0.98673 0.90573 1.18730 0.93580 0.89905 1.11412 1.20886 0.85580 0.85029 0.72717 1.90829 1.14656 1.87834 1.46304 1.86655 1.39869 1.13768 1.83226 1.22647 0.95868 0.80924 0.99020 0.87605 1.22343 1.03754 1.03289 0.93629 1.19762 0.87680 0.82753 0.80325 1.90705 1.15679 1.78829 1.53895 1.47734 1.13595 1.16792 1.54365 1.22043 0.82632 1.03451 0.99757 1.19722 0.91577 0.87122 0.91854 1.21299 1.28235 1.12376 0.94865 0.90646 1.24855 0.94864 0.95411 0.97872 1.69895 1.30650 1.18241 1.34660 0.86867 0.77977 0.78956 0.86068 1.20061 1.20895 1.18845 1.21035 1.01827 0.88681 0.95400 1.16593 0.85850 0.82846 1.11155 1.91532 1.76453 1.48139 1.94458 0.87585 0.91840 0.91866 0.83316 0.82614 0.90411 0.88845 0.90994 0.93189 0.91093 0.90063 0.94079 0.95256 0.92518 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.69 10.35 -18.95 -0.20 -2.89 16 3 C 0.13 1.25 6.70 -38.97 -0.26 0.99 16 4 C -0.20 -1.63 9.01 -39.51 -0.36 -1.99 16 5 C -0.02 -0.22 9.61 -39.20 -0.38 -0.59 16 6 C -0.13 -1.55 5.87 -104.98 -0.62 -2.17 16 7 C 0.51 7.18 7.86 34.49 0.27 7.45 16 8 O -0.51 -7.68 15.60 -19.27 -0.30 -7.98 16 9 O -0.32 -5.03 8.69 -47.20 -0.41 -5.44 16 10 C 0.07 1.17 2.17 -27.88 -0.06 1.11 16 11 H 0.11 1.52 6.75 -51.92 -0.35 1.17 16 12 C -0.17 -2.31 9.09 37.16 0.34 -1.97 16 13 C 0.51 10.40 7.00 -10.99 -0.08 10.32 16 14 O -0.52 -12.70 16.18 -13.73 -0.22 -12.92 16 15 N -0.59 -11.92 2.86 -182.96 -0.52 -12.44 16 16 C 0.06 0.95 9.85 59.85 0.59 1.54 16 17 C 0.22 5.20 4.21 -5.19 -0.02 5.18 16 18 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 19 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 22 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 26 C -0.05 -0.53 9.56 -39.13 -0.37 -0.91 16 27 C 0.06 0.58 7.30 -39.36 -0.29 0.30 16 28 F -0.13 -1.45 17.10 2.25 0.04 -1.41 16 29 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.23 7.65 -51.93 -0.40 -0.16 16 31 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 32 H 0.15 0.83 6.27 -52.49 -0.33 0.50 16 33 H 0.16 1.56 7.60 -52.49 -0.40 1.16 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.18 5.49 -51.93 -0.28 0.90 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.87 4.14 -51.93 -0.21 0.66 16 39 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.04 1.06 6.55 -51.93 -0.34 0.72 16 41 H 0.03 0.65 7.50 -51.93 -0.39 0.26 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.16 1.55 7.64 -52.49 -0.40 1.14 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -35.66 370.70 -5.81 -41.47 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.20 Total: -1.07 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.68 Total: 7.09 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.25 Total: -38.92 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.13 Total: -29.24 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.66 -5.81 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008176816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.187 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds