Wall clock time and date at job start Tue Mar 31 2020 22:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35748 * 116.99759 * 2 1 4 4 C 1.38942 * 119.91718 * 0.02562 * 3 2 1 5 5 C 1.37716 * 120.12173 * 179.76507 * 4 3 2 6 6 C 1.39774 * 119.94535 * 0.47250 * 5 4 3 7 7 C 1.47472 * 120.08780 * 179.78822 * 6 5 4 8 8 O 1.21507 * 120.00200 * 179.72342 * 7 6 5 9 9 O 1.34749 * 119.99444 * 359.72075 * 7 6 5 10 10 C 1.45204 * 116.99914 * 179.97438 * 9 7 6 11 11 H 1.09009 * 109.47356 * 330.00597 * 10 9 7 12 12 C 1.53003 * 109.46975 * 90.00013 * 10 9 7 13 13 C 1.50693 * 109.47584 * 210.00586 * 10 9 7 14 14 O 1.21283 * 119.99993 * 346.83266 * 13 10 9 15 15 N 1.34777 * 120.00459 * 166.83663 * 13 10 9 16 16 C 1.46500 * 119.99806 * 4.66120 * 15 13 10 17 17 C 1.46495 * 119.99998 * 184.38220 * 15 13 10 18 18 C 1.50704 * 109.47321 * 270.27431 * 17 15 13 19 19 H 1.07999 * 120.00020 * 0.02562 * 18 17 15 20 20 C 1.37876 * 119.99771 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99636 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00189 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47145 * 90.00156 * 22 20 18 24 24 H 1.48506 * 109.46992 * 209.99801 * 22 20 18 25 25 H 1.48498 * 109.47180 * 329.99851 * 22 20 18 26 26 C 1.39800 * 119.82788 * 359.51315 * 6 5 4 27 27 C 1.37870 * 119.87894 * 0.24932 * 26 6 5 28 28 F 1.35099 * 119.97336 * 179.97438 * 27 26 6 29 29 H 1.08996 * 109.47441 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47224 * 300.00169 * 1 2 3 31 31 H 1.09006 * 109.47219 * 60.00495 * 1 2 3 32 32 H 1.07998 * 119.93631 * 0.03353 * 4 3 2 33 33 H 1.08002 * 120.02539 * 180.26121 * 5 4 3 34 34 H 1.08995 * 109.46883 * 49.82216 * 12 10 9 35 35 H 1.08998 * 109.47165 * 169.82309 * 12 10 9 36 36 H 1.08997 * 109.47212 * 289.82301 * 12 10 9 37 37 H 1.08995 * 109.47190 * 266.44608 * 16 15 13 38 38 H 1.09003 * 109.47306 * 26.44211 * 16 15 13 39 39 H 1.09001 * 109.47589 * 146.44208 * 16 15 13 40 40 H 1.09000 * 109.47321 * 30.27586 * 17 15 13 41 41 H 1.09005 * 109.47230 * 150.27868 * 17 15 13 42 42 H 0.97001 * 119.99626 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.05896 * 180.23386 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2868 2.3737 0.0005 5 6 1.9076 3.6030 0.0054 6 6 3.3032 3.6799 -0.0001 7 6 3.9712 4.9946 0.0004 8 8 5.1845 5.0597 0.0006 9 8 3.2359 6.1238 0.0005 10 6 3.9604 7.3822 0.0016 11 1 4.9128 7.2528 0.5158 12 6 4.2157 7.8249 -1.4406 13 6 3.1444 8.4311 0.7121 14 8 1.9754 8.2246 0.9605 15 7 3.7136 9.5988 1.0714 16 6 5.0954 9.8904 0.6821 17 6 2.9484 10.5788 1.8461 18 6 2.2217 11.5056 0.9059 19 1 2.3196 11.3771 -0.1619 20 6 1.4309 12.5168 1.4090 21 7 0.7963 13.3253 0.5884 22 14 1.2610 12.7385 3.2560 23 1 2.3182 13.6604 3.7432 24 1 -0.0746 13.3096 3.5651 25 1 1.4040 11.4220 3.9278 26 6 4.0642 2.5072 -0.0003 27 6 3.4353 1.2803 -0.0003 28 9 4.1689 0.1458 -0.0010 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 0.2085 2.3144 0.0015 33 1 1.3165 4.5069 0.0101 34 1 3.2841 7.7802 -2.0047 35 1 4.5945 8.8469 -1.4453 36 1 4.9502 7.1630 -1.8992 37 1 5.7701 9.5884 1.4831 38 1 5.3408 9.3403 -0.2263 39 1 5.2037 10.9596 0.4997 40 1 2.2256 10.0599 2.4757 41 1 3.6276 11.1567 2.4730 42 1 0.2403 14.0370 0.9424 43 1 5.1428 2.5623 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008176816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:15 Heat of formation + Delta-G solvation = -178.297334 kcal Electronic energy + Delta-G solvation = -28904.096349 eV Core-core repulsion = 24443.701954 eV Total energy + Delta-G solvation = -4460.394394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.97733 -42.06591 -41.15870 -40.51312 -38.56349 -37.58034 -36.72883 -34.83515 -33.32288 -32.03162 -31.68729 -30.17513 -28.55910 -27.71141 -26.10141 -25.20618 -24.06265 -23.64945 -22.05391 -20.46375 -19.82535 -19.25842 -19.12424 -18.45156 -17.85019 -17.78504 -17.43164 -17.19762 -17.03271 -16.73249 -16.27599 -16.15708 -15.98061 -15.88038 -15.38487 -15.11942 -14.82790 -14.48787 -14.33904 -14.03424 -13.79477 -13.76170 -13.71037 -13.52279 -13.41423 -13.15045 -12.97526 -12.87737 -12.54626 -12.28319 -12.24469 -12.21815 -12.05374 -11.95423 -11.82778 -11.74409 -10.80947 -10.67224 -10.23997 -9.52538 -9.49706 -8.32622 -6.37853 -0.60834 -0.08828 1.10892 1.24376 1.33929 1.38637 1.48632 1.55822 1.97581 2.28744 2.32659 2.39205 2.99417 3.01285 3.34348 3.39892 3.50554 3.70801 3.75399 3.82161 3.88283 4.20311 4.24978 4.33346 4.38229 4.40968 4.57090 4.62312 4.63153 4.71864 4.75144 4.77201 4.86828 4.92612 4.93097 4.99953 5.12400 5.18839 5.30682 5.44266 5.52928 6.05521 6.22285 6.43843 6.56002 6.63621 7.15218 7.29105 8.84171 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018045 B = 0.002356 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.299357 B =11881.844878 C =12827.042613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.320 6.320 3 C 0.139 3.861 4 C -0.186 4.186 5 C -0.021 4.021 6 C -0.152 4.152 7 C 0.515 3.485 8 O -0.521 6.521 9 O -0.334 6.334 10 C 0.082 3.918 11 H 0.126 0.874 12 C -0.168 4.168 13 C 0.502 3.498 14 O -0.570 6.570 15 N -0.598 5.598 16 C 0.057 3.943 17 C 0.224 3.776 18 C -0.535 4.535 19 H 0.031 0.969 20 C 0.011 3.989 21 N -0.944 5.944 22 Si 0.947 3.053 23 H -0.251 1.251 24 H -0.283 1.283 25 H -0.255 1.255 26 C -0.045 4.045 27 C 0.040 3.960 28 F -0.135 7.135 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.180 0.820 33 H 0.154 0.846 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.022 0.978 41 H 0.056 0.944 42 H 0.268 0.732 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -25.286 -1.320 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.233 6.233 3 C 0.090 3.910 4 C -0.204 4.204 5 C -0.039 4.039 6 C -0.154 4.154 7 C 0.362 3.638 8 O -0.412 6.412 9 O -0.250 6.250 10 C 0.024 3.976 11 H 0.144 0.856 12 C -0.225 4.225 13 C 0.289 3.711 14 O -0.449 6.449 15 N -0.330 5.330 16 C -0.085 4.085 17 C 0.102 3.898 18 C -0.574 4.574 19 H 0.050 0.950 20 C -0.187 4.187 21 N -0.584 5.584 22 Si 0.770 3.230 23 H -0.175 1.175 24 H -0.209 1.209 25 H -0.179 1.179 26 C -0.064 4.064 27 C 0.020 3.980 28 F -0.114 7.114 29 H 0.143 0.857 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.197 0.803 33 H 0.171 0.829 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.155 -25.420 -1.191 25.965 hybrid contribution -0.394 0.648 0.433 0.873 sum 4.761 -24.772 -0.758 25.237 Atomic orbital electron populations 1.23607 0.74850 1.06535 1.03392 1.86115 1.24799 1.25287 1.87054 1.19463 0.90608 0.86626 0.94255 1.21420 1.02379 0.89580 1.07027 1.21565 0.92652 0.99387 0.90299 1.18651 0.94242 0.88853 1.13612 1.21228 0.85475 0.85108 0.72016 1.90807 1.15148 1.87936 1.47300 1.86660 1.40574 1.14153 1.83588 1.22549 0.95173 0.79972 0.99880 0.85632 1.22343 1.03955 1.04218 0.91935 1.20599 0.87468 0.83502 0.79576 1.90664 1.18171 1.80038 1.56071 1.47823 1.15290 1.16113 1.53749 1.22371 0.80089 1.03780 1.02212 1.19431 0.91943 0.87088 0.91366 1.21515 1.28901 1.13331 0.93606 0.95025 1.25840 0.94340 0.94979 1.03534 1.70050 1.31864 1.19256 1.37278 0.85724 0.78506 0.79601 0.79215 1.17539 1.20873 1.17864 1.21003 1.01979 0.88432 0.95003 1.16727 0.86512 0.82553 1.12169 1.91508 1.76756 1.48466 1.94634 0.85744 0.90627 0.90482 0.80314 0.82853 0.91525 0.88172 0.88502 0.89919 0.88525 0.90517 0.96015 0.92615 0.92274 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.32 -5.03 10.35 -90.73 -0.94 -5.97 16 3 C 0.14 2.41 6.70 22.67 0.15 2.56 16 4 C -0.19 -2.71 9.01 22.31 0.20 -2.51 16 5 C -0.02 -0.39 9.61 22.52 0.22 -0.18 16 6 C -0.15 -3.42 5.87 -20.09 -0.12 -3.53 16 7 C 0.52 14.08 7.86 70.26 0.55 14.64 16 8 O -0.52 -15.22 15.60 19.81 0.31 -14.91 16 9 O -0.33 -10.41 8.69 -50.31 -0.44 -10.85 16 10 C 0.08 2.52 2.17 29.85 0.06 2.59 16 11 H 0.13 3.35 6.75 -2.38 -0.02 3.33 16 12 C -0.17 -4.25 9.09 71.98 0.65 -3.60 16 13 C 0.50 20.53 7.00 87.65 0.61 21.14 16 14 O -0.57 -28.91 16.18 15.40 0.25 -28.66 16 15 N -0.60 -23.76 2.86 -851.14 -2.43 -26.19 16 16 C 0.06 1.56 9.85 127.77 1.26 2.82 16 17 C 0.22 10.65 4.21 85.64 0.36 11.01 16 18 C -0.53 -30.87 9.94 25.60 0.25 -30.61 16 19 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 20 C 0.01 0.65 5.47 84.65 0.46 1.11 16 21 N -0.94 -58.93 13.96 21.45 0.30 -58.63 16 22 Si 0.95 43.53 27.47 68.60 1.88 45.41 16 23 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.25 -11.25 6.54 99.48 0.65 -10.59 16 26 C -0.05 -0.93 9.56 22.56 0.22 -0.71 16 27 C 0.04 0.81 7.30 22.41 0.16 0.98 16 28 F -0.13 -3.00 17.10 44.97 0.77 -2.23 16 29 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.33 7.65 -2.39 -0.02 0.31 16 31 H 0.08 0.31 7.65 -2.38 -0.02 0.29 16 32 H 0.18 1.44 6.27 -2.91 -0.02 1.42 16 33 H 0.15 3.01 7.60 -2.91 -0.02 2.99 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.10 2.38 5.49 -2.39 -0.01 2.36 16 36 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 2.13 4.14 -2.39 -0.01 2.12 16 39 H 0.08 2.19 8.10 -2.39 -0.02 2.17 16 40 H 0.02 1.12 6.55 -2.39 -0.02 1.11 16 41 H 0.06 2.37 7.50 -2.38 -0.02 2.35 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.16 3.09 7.64 -2.91 -0.02 3.07 16 Total: -1.00 -80.47 370.70 6.87 -73.60 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.00 Total: 11.55 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 6.16 Total: 16.88 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.13 Total: -84.82 kcal Atomic # 8 Polarization: -59.57 SS G_CDS: -0.82 Total: -60.39 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.77 Total: -2.23 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -80.47 6.87 -73.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008176816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.695 kcal (2) G-P(sol) polarization free energy of solvation -80.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds