Wall clock time and date at job start Tue Mar 31 2020 22:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47118 * 2 1 4 4 C 1.46499 * 120.00074 * 89.99855 * 3 2 1 5 5 C 1.50701 * 109.47115 * 269.99721 * 4 3 2 6 6 C 1.38247 * 119.93158 * 270.02734 * 5 4 3 7 7 C 1.38245 * 120.14929 * 179.77035 * 6 5 4 8 8 C 1.38564 * 119.99792 * 0.45790 * 7 6 5 9 9 O 1.35995 * 120.07625 * 179.79495 * 8 7 6 10 10 C 1.42901 * 116.99655 * 359.72270 * 9 8 7 11 11 C 1.39158 * 119.84990 * 359.51717 * 8 7 6 12 12 O 1.35997 * 120.06823 * 180.23182 * 11 8 7 13 13 C 1.42902 * 116.99582 * 180.02562 * 12 11 8 14 14 C 1.38241 * 119.92292 * 90.00056 * 5 4 3 15 15 C 1.34783 * 119.99727 * 270.00168 * 3 2 1 16 16 O 1.21279 * 119.99633 * 179.97438 * 15 3 2 17 17 C 1.50697 * 119.99833 * 359.97438 * 15 3 2 18 18 S 1.81007 * 109.46977 * 180.02562 * 17 15 3 19 19 C 1.76191 * 99.99898 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00573 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99745 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00159 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99961 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47486 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47114 * 120.00440 * 23 21 19 26 26 H 1.48499 * 109.47365 * 240.00291 * 23 21 19 27 27 H 1.08998 * 109.46891 * 300.00213 * 1 2 3 28 28 H 1.08995 * 109.47064 * 60.00671 * 1 2 3 29 29 H 1.09002 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46891 * 239.99787 * 2 1 3 31 31 H 1.09005 * 109.47179 * 119.99889 * 2 1 3 32 32 H 1.09000 * 109.46936 * 150.00278 * 4 3 2 33 33 H 1.08993 * 109.47095 * 30.00332 * 4 3 2 34 34 H 1.07998 * 119.92593 * 0.02562 * 6 5 4 35 35 H 1.07997 * 119.99909 * 180.23310 * 7 6 5 36 36 H 1.08999 * 109.47144 * 300.00182 * 10 9 8 37 37 H 1.08998 * 109.47043 * 59.99780 * 10 9 8 38 38 H 1.08996 * 109.46732 * 180.02562 * 10 9 8 39 39 H 1.09001 * 109.47198 * 60.00379 * 13 12 11 40 40 H 1.09007 * 109.46665 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.47287 * 299.99772 * 13 12 11 42 42 H 1.08004 * 120.00331 * 0.02562 * 14 5 4 43 43 H 1.08999 * 109.47426 * 299.99964 * 17 15 3 44 44 H 1.09004 * 109.47308 * 60.00684 * 17 15 3 45 45 H 0.97004 * 119.99845 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0067 2.7823 1.7037 6 6 0.7775 4.0855 1.3032 7 6 -0.3753 4.7400 1.6957 8 6 -1.2996 4.0929 2.5000 9 8 -2.4321 4.7366 2.8905 10 6 -2.6020 6.0819 2.4393 11 6 -1.0691 2.7809 2.9026 12 8 -1.9756 2.1400 3.6882 13 6 -1.6727 0.7948 4.0632 14 6 0.0861 2.1292 2.5018 15 6 2.2430 2.0166 -1.1673 16 8 2.6468 3.1601 -1.1673 17 6 1.9923 1.3059 -2.4723 18 16 2.3849 2.4146 -3.8482 19 6 2.0113 1.3586 -5.2082 20 1 1.6563 0.3543 -5.0305 21 6 2.1733 1.8175 -6.5081 22 7 2.6066 3.0415 -6.7247 23 14 1.7780 0.6978 -7.9500 24 1 1.3128 -0.6178 -7.4422 25 1 0.7099 1.3144 -8.7772 26 1 2.9964 0.5068 -8.7771 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.0644 2.7985 1.1383 33 1 2.5506 1.3452 2.0283 34 1 1.4987 4.5921 0.6790 35 1 -0.5536 5.7568 1.3784 36 1 -1.7769 6.6941 2.8032 37 1 -2.6152 6.1007 1.3496 38 1 -3.5432 6.4770 2.8214 39 1 -0.7363 0.7751 4.6207 40 1 -2.4753 0.4023 4.6877 41 1 -1.5754 0.1811 3.1677 42 1 0.2674 1.1111 2.8133 43 1 2.6228 0.4186 -2.5299 44 1 0.9444 1.0114 -2.5303 45 1 2.7195 3.3623 -7.6332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047904235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:33 Heat of formation + Delta-G solvation = -79.638653 kcal Electronic energy + Delta-G solvation = -27360.608448 eV Core-core repulsion = 23470.705391 eV Total energy + Delta-G solvation = -3889.903057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77489 -39.54457 -38.57322 -37.18144 -35.59472 -32.42633 -31.98937 -30.52911 -30.11340 -29.27937 -27.53275 -27.43070 -25.59428 -25.11055 -23.30026 -22.28453 -21.59976 -19.18769 -18.54404 -17.67621 -17.24503 -16.93501 -16.52423 -16.19816 -15.80448 -15.40778 -15.36547 -14.88877 -14.80407 -14.67166 -14.14585 -13.96701 -13.66481 -13.50425 -13.28591 -12.98854 -12.80564 -12.62389 -12.46505 -12.22039 -12.03141 -11.83163 -11.62913 -11.37623 -11.35933 -11.21209 -11.15357 -11.06863 -11.00786 -10.83803 -10.74851 -9.79100 -9.37737 -9.07125 -8.78574 -8.57277 -8.21417 -7.85996 -6.49154 -6.21671 -3.91674 1.14865 1.34488 2.95624 3.07835 3.11143 3.13974 3.21326 3.26146 3.30930 3.55312 3.79592 4.20552 4.57228 4.68649 4.78576 4.85705 4.88385 4.90909 4.94640 5.02058 5.07321 5.13490 5.18067 5.21996 5.24854 5.26147 5.35308 5.37752 5.42152 5.51734 5.57327 5.69366 5.79305 5.81971 5.94388 6.01354 6.09058 6.25635 6.27797 6.55828 6.59018 6.67213 6.89510 7.44642 7.55596 7.60283 8.35601 8.57946 9.23934 10.85772 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.002774 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.473265 B =10090.621193 C =10660.450159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.108 3.892 3 N -0.615 5.615 4 C 0.160 3.840 5 C -0.100 4.100 6 C -0.086 4.086 7 C -0.173 4.173 8 C 0.099 3.901 9 O -0.310 6.310 10 C 0.026 3.974 11 C 0.090 3.910 12 O -0.309 6.309 13 C 0.027 3.973 14 C -0.157 4.157 15 C 0.536 3.464 16 O -0.514 6.514 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.133 0.867 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.188 -3.588 22.914 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.015 4.015 3 N -0.350 5.350 4 C 0.037 3.963 5 C -0.102 4.102 6 C -0.105 4.105 7 C -0.192 4.192 8 C 0.054 3.946 9 O -0.223 6.223 10 C -0.069 4.069 11 C 0.045 3.955 12 O -0.222 6.222 13 C -0.068 4.068 14 C -0.176 4.176 15 C 0.324 3.676 16 O -0.388 6.388 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.150 0.850 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.858 -1.767 22.967 24.034 hybrid contribution -0.633 -2.101 -1.151 2.478 sum -7.491 -3.868 21.816 23.389 Atomic orbital electron populations 1.22359 0.96122 1.01974 1.03264 1.21544 0.94477 0.82431 1.03072 1.48046 1.67721 1.14076 1.05206 1.20241 0.94322 0.96510 0.85203 1.19962 0.97450 0.94537 0.98219 1.21012 0.96944 0.94268 0.98276 1.21118 0.95456 1.01204 1.01386 1.18274 0.88118 0.90205 0.98028 1.86140 1.37630 1.27505 1.71050 1.23064 1.02656 0.81057 1.00138 1.18143 0.90704 0.90225 0.96418 1.86161 1.43943 1.27346 1.64799 1.23039 1.02296 0.81364 1.00127 1.20864 0.93986 1.00235 1.02561 1.20313 0.76216 0.86509 0.84529 1.90664 1.44003 1.17363 1.86771 1.23581 1.04699 1.04483 0.97286 1.85360 1.86751 1.18054 0.93357 1.22895 1.51587 1.01473 0.92218 0.90949 1.24988 0.94696 0.95539 0.98369 1.70031 1.43089 1.15647 1.21515 0.86129 0.78168 0.80108 0.81164 1.19621 1.20583 1.20571 0.92008 0.91978 0.91848 0.89919 0.90760 0.88796 0.90136 0.84528 0.84725 0.92719 0.92515 0.88344 0.92858 0.88395 0.92766 0.84973 0.89373 0.89331 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.11 1.15 5.98 -4.04 -0.02 1.12 16 3 N -0.62 -8.47 2.46 -175.06 -0.43 -8.90 16 4 C 0.16 1.90 5.57 -5.19 -0.03 1.87 16 5 C -0.10 -1.24 5.39 -104.62 -0.56 -1.81 16 6 C -0.09 -1.19 9.69 -39.58 -0.38 -1.57 16 7 C -0.17 -2.21 9.04 -39.46 -0.36 -2.57 16 8 C 0.10 1.33 6.70 -39.12 -0.26 1.06 16 9 O -0.31 -3.98 10.28 -34.23 -0.35 -4.33 16 10 C 0.03 0.23 9.81 101.05 0.99 1.22 16 11 C 0.09 1.15 6.70 -39.12 -0.26 0.89 16 12 O -0.31 -3.73 10.28 -34.24 -0.35 -4.08 16 13 C 0.03 0.20 9.81 101.05 0.99 1.19 16 14 C -0.16 -1.75 6.52 -39.46 -0.26 -2.01 16 15 C 0.54 9.99 7.69 -10.98 -0.08 9.90 16 16 O -0.51 -11.22 14.95 5.56 0.08 -11.14 16 17 C -0.15 -3.05 4.71 36.00 0.17 -2.88 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 23 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H 0.06 0.65 5.26 -51.93 -0.27 0.38 16 28 H 0.06 0.81 7.22 -51.93 -0.38 0.43 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.90 6.44 -51.93 -0.33 0.57 16 31 H 0.07 0.58 7.89 -51.93 -0.41 0.17 16 32 H 0.09 1.23 7.36 -51.93 -0.38 0.85 16 33 H 0.08 0.70 7.83 -51.93 -0.41 0.30 16 34 H 0.14 2.04 7.56 -52.49 -0.40 1.65 16 35 H 0.14 1.46 6.30 -52.49 -0.33 1.13 16 36 H 0.05 0.41 7.68 -51.93 -0.40 0.01 16 37 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 42 H 0.13 1.13 5.97 -52.48 -0.31 0.82 16 43 H 0.09 1.66 7.40 -51.92 -0.38 1.27 16 44 H 0.09 1.71 7.19 -51.91 -0.37 1.34 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -35.67 383.11 -7.65 -43.32 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.38 Total: 0.21 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 0.51 Total: -7.97 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.30 Total: -34.28 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.62 Total: -19.55 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.67 -7.65 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047904235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.318 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds