Wall clock time and date at job start Tue Mar 31 2020 22:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47118 * 2 1 4 4 C 1.46499 * 120.00074 * 89.99855 * 3 2 1 5 5 C 1.50701 * 109.47115 * 269.99721 * 4 3 2 6 6 C 1.38247 * 119.93158 * 270.02734 * 5 4 3 7 7 C 1.38245 * 120.14929 * 179.77035 * 6 5 4 8 8 C 1.38564 * 119.99792 * 0.45790 * 7 6 5 9 9 O 1.35995 * 120.07625 * 179.79495 * 8 7 6 10 10 C 1.42901 * 116.99655 * 359.72270 * 9 8 7 11 11 C 1.39158 * 119.84990 * 359.51717 * 8 7 6 12 12 O 1.35997 * 120.06823 * 180.23182 * 11 8 7 13 13 C 1.42902 * 116.99582 * 180.02562 * 12 11 8 14 14 C 1.38241 * 119.92292 * 90.00056 * 5 4 3 15 15 C 1.34783 * 119.99727 * 270.00168 * 3 2 1 16 16 O 1.21279 * 119.99633 * 179.97438 * 15 3 2 17 17 C 1.50697 * 119.99833 * 359.97438 * 15 3 2 18 18 S 1.81007 * 109.46977 * 180.02562 * 17 15 3 19 19 C 1.76191 * 99.99898 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00573 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99745 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00159 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99961 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47486 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47114 * 120.00440 * 23 21 19 26 26 H 1.48499 * 109.47365 * 240.00291 * 23 21 19 27 27 H 1.08998 * 109.46891 * 300.00213 * 1 2 3 28 28 H 1.08995 * 109.47064 * 60.00671 * 1 2 3 29 29 H 1.09002 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46891 * 239.99787 * 2 1 3 31 31 H 1.09005 * 109.47179 * 119.99889 * 2 1 3 32 32 H 1.09000 * 109.46936 * 150.00278 * 4 3 2 33 33 H 1.08993 * 109.47095 * 30.00332 * 4 3 2 34 34 H 1.07998 * 119.92593 * 0.02562 * 6 5 4 35 35 H 1.07997 * 119.99909 * 180.23310 * 7 6 5 36 36 H 1.08999 * 109.47144 * 300.00182 * 10 9 8 37 37 H 1.08998 * 109.47043 * 59.99780 * 10 9 8 38 38 H 1.08996 * 109.46732 * 180.02562 * 10 9 8 39 39 H 1.09001 * 109.47198 * 60.00379 * 13 12 11 40 40 H 1.09007 * 109.46665 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.47287 * 299.99772 * 13 12 11 42 42 H 1.08004 * 120.00331 * 0.02562 * 14 5 4 43 43 H 1.08999 * 109.47426 * 299.99964 * 17 15 3 44 44 H 1.09004 * 109.47308 * 60.00684 * 17 15 3 45 45 H 0.97004 * 119.99845 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0067 2.7823 1.7037 6 6 0.7775 4.0855 1.3032 7 6 -0.3753 4.7400 1.6957 8 6 -1.2996 4.0929 2.5000 9 8 -2.4321 4.7366 2.8905 10 6 -2.6020 6.0819 2.4393 11 6 -1.0691 2.7809 2.9026 12 8 -1.9756 2.1400 3.6882 13 6 -1.6727 0.7948 4.0632 14 6 0.0861 2.1292 2.5018 15 6 2.2430 2.0166 -1.1673 16 8 2.6468 3.1601 -1.1673 17 6 1.9923 1.3059 -2.4723 18 16 2.3849 2.4146 -3.8482 19 6 2.0113 1.3586 -5.2082 20 1 1.6563 0.3543 -5.0305 21 6 2.1733 1.8175 -6.5081 22 7 2.6066 3.0415 -6.7247 23 14 1.7780 0.6978 -7.9500 24 1 1.3128 -0.6178 -7.4422 25 1 0.7099 1.3144 -8.7772 26 1 2.9964 0.5068 -8.7771 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.0644 2.7985 1.1383 33 1 2.5506 1.3452 2.0283 34 1 1.4987 4.5921 0.6790 35 1 -0.5536 5.7568 1.3784 36 1 -1.7769 6.6941 2.8032 37 1 -2.6152 6.1007 1.3496 38 1 -3.5432 6.4770 2.8214 39 1 -0.7363 0.7751 4.6207 40 1 -2.4753 0.4023 4.6877 41 1 -1.5754 0.1811 3.1677 42 1 0.2674 1.1111 2.8133 43 1 2.6228 0.4186 -2.5299 44 1 0.9444 1.0114 -2.5303 45 1 2.7195 3.3623 -7.6332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047904235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:32 Heat of formation + Delta-G solvation = -102.274246 kcal Electronic energy + Delta-G solvation = -27361.590001 eV Core-core repulsion = 23470.705391 eV Total energy + Delta-G solvation = -3890.884610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71159 -40.79385 -39.41704 -38.20923 -36.76179 -34.58662 -32.98105 -31.49568 -31.08664 -30.63866 -28.42047 -28.06447 -27.67736 -26.22452 -24.27832 -23.16298 -22.57341 -20.58370 -19.53067 -19.40373 -18.19154 -18.12136 -17.57757 -17.07776 -16.98317 -16.87995 -16.61803 -16.14614 -15.83878 -15.76847 -15.44298 -15.28679 -14.80473 -14.54831 -14.42948 -14.30816 -14.04376 -13.60653 -13.45213 -13.19662 -13.16925 -13.03661 -12.91902 -12.76930 -12.65325 -12.49886 -12.17672 -12.08313 -12.05308 -12.04472 -11.74996 -11.68728 -11.15868 -10.84291 -10.25946 -9.79747 -9.64353 -8.80824 -8.66264 -8.34988 -6.12587 0.20625 0.35897 1.27498 1.40675 1.46911 1.57674 1.62778 2.14980 2.27458 2.32406 2.36248 2.75998 2.99140 3.27245 3.66570 3.74456 3.83520 4.02404 4.08098 4.13270 4.21343 4.31434 4.34797 4.35188 4.40620 4.42640 4.45351 4.48801 4.53061 4.62014 4.66575 4.69159 4.77758 4.81487 4.87643 4.99115 5.06451 5.26842 5.37732 5.41576 5.57209 5.63429 5.65335 6.08477 6.19598 6.32337 6.59403 7.06413 7.19584 8.74407 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.002774 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.473265 B =10090.621193 C =10660.450159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 N -0.600 5.600 4 C 0.159 3.841 5 C -0.103 4.103 6 C -0.109 4.109 7 C -0.179 4.179 8 C 0.082 3.918 9 O -0.328 6.328 10 C 0.019 3.981 11 C 0.083 3.917 12 O -0.329 6.329 13 C 0.015 3.985 14 C -0.144 4.144 15 C 0.533 3.467 16 O -0.557 6.557 17 C -0.123 4.123 18 S -0.150 6.150 19 C -0.544 4.544 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.273 1.273 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.121 0.879 39 H 0.070 0.930 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.167 0.833 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -6.920 24.465 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.023 4.023 3 N -0.333 5.333 4 C 0.037 3.963 5 C -0.105 4.105 6 C -0.128 4.128 7 C -0.198 4.198 8 C 0.037 3.963 9 O -0.242 6.242 10 C -0.076 4.076 11 C 0.037 3.963 12 O -0.244 6.244 13 C -0.079 4.079 14 C -0.163 4.163 15 C 0.320 3.680 16 O -0.435 6.435 17 C -0.274 4.274 18 S 0.077 5.923 19 C -0.692 4.692 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.198 1.198 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.161 0.839 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.084 0.916 42 H 0.184 0.816 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.748 -5.138 24.567 26.267 hybrid contribution -0.434 -1.091 -1.454 1.869 sum -8.181 -6.230 23.113 25.297 Atomic orbital electron populations 1.22326 0.95885 1.03292 1.01797 1.21916 0.94603 0.80462 1.05293 1.48023 1.65913 1.15149 1.04222 1.20451 0.93585 0.97290 0.84984 1.20018 0.97985 0.94000 0.98479 1.20989 0.97168 0.95510 0.99163 1.21200 0.95262 1.01776 1.01522 1.18532 0.88373 0.91028 0.98387 1.86109 1.37505 1.29160 1.71421 1.23311 1.04278 0.79689 1.00288 1.18384 0.91278 0.90240 0.96389 1.86145 1.44190 1.29513 1.64526 1.23385 1.04015 0.79317 1.01161 1.21076 0.92656 1.01318 1.01228 1.20071 0.76468 0.85994 0.85420 1.90656 1.46333 1.19104 1.87396 1.23398 1.05449 1.03184 0.95418 1.85526 1.87468 1.22109 0.97200 1.23211 1.51611 1.01683 0.92712 0.90111 1.26119 0.94191 0.97166 1.01651 1.70192 1.44308 1.17859 1.22379 0.84918 0.78111 0.78202 0.76798 1.18012 1.20005 1.19827 0.91749 0.95158 0.89126 0.90061 0.86256 0.90609 0.85523 0.86860 0.83890 0.91744 0.92625 0.86065 0.91180 0.86610 0.91611 0.81614 0.87526 0.88346 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.24 71.98 0.74 -2.38 16 2 C 0.10 1.72 5.98 86.38 0.52 2.24 16 3 N -0.60 -15.38 2.46 -826.15 -2.03 -17.41 16 4 C 0.16 3.45 5.57 85.63 0.48 3.93 16 5 C -0.10 -2.45 5.39 -19.86 -0.11 -2.56 16 6 C -0.11 -3.13 9.69 22.27 0.22 -2.91 16 7 C -0.18 -4.74 9.04 22.35 0.20 -4.54 16 8 C 0.08 2.20 6.70 22.57 0.15 2.35 16 9 O -0.33 -8.39 10.28 -79.62 -0.82 -9.21 16 10 C 0.02 0.32 9.81 113.37 1.11 1.43 16 11 C 0.08 1.98 6.70 22.57 0.15 2.14 16 12 O -0.33 -7.30 10.28 -79.65 -0.82 -8.12 16 13 C 0.02 0.17 9.81 113.37 1.11 1.29 16 14 C -0.14 -2.83 6.52 22.35 0.15 -2.68 16 15 C 0.53 19.95 7.69 87.65 0.67 20.62 16 16 O -0.56 -25.42 14.95 -3.03 -0.05 -25.47 16 17 C -0.12 -5.03 4.71 71.23 0.34 -4.69 16 18 S -0.15 -8.43 20.57 -56.49 -1.16 -9.59 16 19 C -0.54 -31.32 9.50 67.95 0.65 -30.68 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 21 C 0.01 0.77 5.49 84.86 0.47 1.23 16 22 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 23 Si 1.00 43.80 29.55 68.60 2.03 45.82 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H 0.06 1.11 5.26 -2.39 -0.01 1.10 16 28 H 0.03 0.73 7.22 -2.39 -0.02 0.71 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.49 6.44 -2.39 -0.02 1.47 16 31 H 0.12 1.11 7.89 -2.38 -0.02 1.09 16 32 H 0.08 1.97 7.36 -2.39 -0.02 1.95 16 33 H 0.13 1.61 7.83 -2.39 -0.02 1.59 16 34 H 0.11 3.72 7.56 -2.91 -0.02 3.70 16 35 H 0.14 3.31 6.30 -2.91 -0.02 3.29 16 36 H 0.06 0.96 7.68 -2.39 -0.02 0.94 16 37 H 0.06 0.95 7.65 -2.39 -0.02 0.93 16 38 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 40 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 42 H 0.17 2.03 5.97 -2.91 -0.02 2.01 16 43 H 0.11 3.91 7.40 -2.40 -0.02 3.89 16 44 H 0.10 3.79 7.19 -2.39 -0.02 3.77 16 45 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -82.07 383.11 5.28 -76.79 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 1.00 Total: 18.33 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 6.84 Total: -15.21 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.74 Total: -73.34 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.68 Total: -42.80 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -82.07 5.28 -76.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047904235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.486 kcal (2) G-P(sol) polarization free energy of solvation -82.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds