Wall clock time and date at job start Tue Mar 31 2020 23:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 120.00305 * 2 1 4 4 O 1.21289 * 120.00499 * 184.96613 * 3 2 1 5 5 C 1.50700 * 119.99704 * 4.96661 * 3 2 1 6 6 O 1.45202 * 109.47434 * 180.02562 * 5 3 2 7 7 C 1.34700 * 117.00223 * 180.02562 * 6 5 3 8 8 O 1.21467 * 120.00136 * 359.97438 * 7 6 5 9 9 C 1.47775 * 120.00123 * 179.97438 * 7 6 5 10 10 C 1.39968 * 120.02834 * 359.97438 * 9 7 6 11 11 C 1.38317 * 120.35181 * 180.02562 * 10 9 7 12 12 C 1.37752 * 120.41857 * 0.02562 * 11 10 9 13 13 C 1.40756 * 120.05113 * 359.97438 * 12 11 10 14 14 C 1.41440 * 120.17593 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99835 * 30.11758 * 14 13 12 16 16 C 1.39939 * 120.00136 * 210.11554 * 14 13 12 17 17 N 1.30828 * 119.99799 * 10.70620 * 16 14 13 18 18 Si 1.86796 * 119.99911 * 190.70626 * 16 14 13 19 19 H 1.48500 * 109.47551 * 59.99957 * 18 16 14 20 20 H 1.48502 * 109.47131 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47344 * 299.99730 * 18 16 14 22 22 C 1.39044 * 120.03144 * 179.97438 * 9 7 6 23 23 C 1.39928 * 120.00180 * 180.02562 * 2 1 3 24 24 C 1.38877 * 120.07102 * 58.36934 * 23 2 1 25 25 C 1.38115 * 119.92562 * 179.79288 * 24 23 2 26 26 C 1.38281 * 120.07379 * 0.48671 * 25 24 23 27 27 C 1.38284 * 120.13927 * 359.74173 * 26 25 24 28 28 C 1.38118 * 120.07140 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47171 * 90.00324 * 1 2 3 30 30 H 1.09004 * 109.46632 * 209.99754 * 1 2 3 31 31 H 1.08997 * 109.46953 * 329.99818 * 1 2 3 32 32 H 1.09002 * 109.47121 * 60.00136 * 5 3 2 33 33 H 1.09003 * 109.47047 * 299.99955 * 5 3 2 34 34 H 1.07997 * 119.82229 * 0.02562 * 10 9 7 35 35 H 1.08002 * 119.78866 * 180.02562 * 11 10 9 36 36 H 1.08005 * 119.97493 * 179.97438 * 12 11 10 37 37 H 0.96994 * 119.99399 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.20619 * 359.70369 * 22 9 7 39 39 H 1.07994 * 120.03306 * 0.02681 * 24 23 2 40 40 H 1.08002 * 119.95799 * 180.23034 * 25 24 23 41 41 H 1.07999 * 119.92871 * 179.72450 * 26 25 24 42 42 H 1.08000 * 119.96359 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.02998 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3483 1.1691 -0.0909 5 6 1.3896 2.4698 0.1130 6 8 2.3322 3.5740 0.0894 7 6 1.8209 4.8167 0.1824 8 8 0.6204 4.9737 0.2800 9 6 2.7204 5.9890 0.1656 10 6 4.1039 5.8088 0.0537 11 6 4.9520 6.9013 0.0379 12 6 4.4456 8.1788 0.1325 13 6 3.0571 8.3801 0.2457 14 6 2.5343 9.6906 0.3436 15 1 3.0490 10.5140 -0.1293 16 6 1.3502 9.9204 1.0531 17 7 0.8394 8.9736 1.7975 18 14 0.4990 11.5791 0.9373 19 1 0.1286 11.8480 -0.4754 20 1 -0.7259 11.5666 1.7769 21 1 1.4177 12.6418 1.4190 22 6 2.1932 7.2721 0.2610 23 6 2.1646 -1.2118 -0.0005 24 6 1.9667 -2.1291 -1.0243 25 6 2.6621 -3.3225 -1.0241 26 6 3.5471 -3.6086 -0.0008 27 6 3.7428 -2.6993 1.0225 28 6 3.0541 -1.5021 1.0257 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.8316 2.4879 1.0491 33 1 0.6981 2.5650 -0.7242 34 1 4.5113 4.8114 -0.0206 35 1 6.0181 6.7517 -0.0492 36 1 5.1144 9.0268 0.1199 37 1 0.0189 9.1330 2.2895 38 1 1.1259 7.4163 0.3427 39 1 1.2727 -1.9080 -1.8215 40 1 2.5114 -4.0346 -1.8219 41 1 4.0863 -4.5444 -0.0006 42 1 4.4344 -2.9259 1.8205 43 1 3.2072 -0.7926 1.8254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051535207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:07 Heat of formation + Delta-G solvation = -62.160652 kcal Electronic energy + Delta-G solvation = -27484.464949 eV Core-core repulsion = 23459.875844 eV Total energy + Delta-G solvation = -4024.589105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87618 -39.82251 -38.58996 -37.37105 -35.92830 -35.64490 -33.71493 -31.24543 -31.09772 -30.35242 -29.53379 -28.35321 -27.02703 -25.36016 -23.61173 -22.86433 -22.46809 -21.00344 -19.96276 -19.85741 -18.08376 -17.62933 -16.96792 -16.73531 -16.62836 -16.20590 -15.77442 -15.62588 -15.02198 -14.73315 -14.48793 -14.47857 -13.81892 -13.69414 -13.53959 -13.37673 -13.08813 -12.97926 -12.79828 -12.68004 -12.60981 -12.16834 -11.88368 -11.70639 -11.50265 -11.18736 -11.13908 -10.77739 -10.55002 -10.49135 -10.27938 -10.06651 -9.80073 -9.73312 -9.55567 -9.28034 -9.22386 -8.59023 -7.77460 -7.51292 -6.77481 -4.46220 0.95774 1.11345 1.90476 2.23216 2.32558 2.78150 3.06515 3.08625 3.12414 3.27002 3.48488 3.52236 3.91610 4.27448 4.59823 4.63613 4.65288 4.66969 4.83200 4.92817 5.00771 5.07295 5.12545 5.24591 5.29719 5.31426 5.50271 5.53874 5.71672 6.01314 6.09985 6.12730 6.22575 6.28279 6.41391 6.53714 6.73559 6.81152 6.88784 6.91776 6.93932 7.17607 7.28961 7.66002 7.72106 7.86441 7.89366 8.08529 8.42018 8.43690 8.75799 8.79451 10.18369 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002106 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.831366 B =13295.074329 C =14087.600861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.577 5.577 3 C 0.518 3.482 4 O -0.493 6.493 5 C 0.051 3.949 6 O -0.332 6.332 7 C 0.515 3.485 8 O -0.517 6.517 9 C -0.119 4.119 10 C -0.182 4.182 11 C -0.108 4.108 12 C -0.192 4.192 13 C 0.094 3.906 14 C -0.464 4.464 15 H 0.081 0.919 16 C 0.071 3.929 17 N -0.799 5.799 18 Si 0.915 3.085 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.079 4.079 23 C 0.147 3.853 24 C -0.125 4.125 25 C -0.109 4.109 26 C -0.125 4.125 27 C -0.106 4.106 28 C -0.108 4.108 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.284 0.716 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 -21.338 -2.212 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.309 5.309 3 C 0.306 3.694 4 O -0.365 6.365 5 C -0.027 4.027 6 O -0.249 6.249 7 C 0.362 3.638 8 O -0.406 6.406 9 C -0.120 4.120 10 C -0.202 4.202 11 C -0.127 4.127 12 C -0.211 4.211 13 C 0.092 3.908 14 C -0.493 4.493 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.424 5.424 18 Si 0.739 3.261 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.098 4.098 23 C 0.056 3.944 24 C -0.145 4.145 25 C -0.128 4.128 26 C -0.143 4.143 27 C -0.125 4.125 28 C -0.128 4.128 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.184 -21.280 -2.060 21.490 hybrid contribution -0.727 0.616 0.109 0.959 sum -2.910 -20.663 -1.951 20.958 Atomic orbital electron populations 1.22017 0.77752 1.04278 1.02884 1.45325 1.07321 1.03680 1.74580 1.20367 0.88126 0.84408 0.76516 1.90787 1.13659 1.86565 1.45449 1.22512 0.91506 0.83883 1.04752 1.86692 1.38893 1.14569 1.84753 1.22000 0.87795 0.82235 0.71735 1.90765 1.16645 1.86217 1.47004 1.18794 0.92391 0.89602 1.11223 1.20692 0.91919 0.97963 1.09624 1.20550 0.97643 0.92965 1.01503 1.21290 0.95119 0.95407 1.09323 1.17549 0.90477 0.93240 0.89553 1.19495 1.06406 0.93791 1.29638 0.90085 1.25927 0.96465 0.98978 0.93251 1.69736 1.18485 1.33836 1.20377 0.86262 0.78794 0.81682 0.79361 1.18826 1.20307 1.19009 1.21660 1.01090 0.88964 0.98102 1.17577 0.95988 0.86041 0.94780 1.21138 1.01459 0.94799 0.97119 1.21008 0.96493 0.96558 0.98713 1.21194 0.98709 0.99693 0.94735 1.21057 0.99082 0.93439 0.98898 1.21219 0.96910 0.97093 0.97548 0.91625 0.90220 0.89901 0.88110 0.88243 0.87459 0.88341 0.88180 0.90529 0.84641 0.85725 0.85609 0.85811 0.85539 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 10.02 59.84 0.60 1.10 16 2 N -0.58 -6.41 2.97 -120.83 -0.36 -6.77 16 3 C 0.52 7.58 7.55 -10.99 -0.08 7.49 16 4 O -0.49 -9.24 15.94 -14.11 -0.22 -9.47 16 5 C 0.05 0.75 4.41 36.01 0.16 0.91 16 6 O -0.33 -6.55 8.99 -47.17 -0.42 -6.97 16 7 C 0.51 11.49 7.90 34.63 0.27 11.76 16 8 O -0.52 -12.05 16.12 -19.24 -0.31 -12.36 16 9 C -0.12 -2.88 5.87 -105.05 -0.62 -3.50 16 10 C -0.18 -4.14 9.62 -38.90 -0.37 -4.52 16 11 C -0.11 -2.38 10.01 -39.73 -0.40 -2.78 16 12 C -0.19 -4.54 9.78 -38.81 -0.38 -4.92 16 13 C 0.09 2.47 5.53 -106.87 -0.59 1.88 16 14 C -0.46 -12.02 9.05 -37.73 -0.34 -12.36 16 15 H 0.08 1.99 7.87 -52.48 -0.41 1.57 16 16 C 0.07 1.78 5.24 -17.34 -0.09 1.69 16 17 N -0.80 -20.88 10.94 55.55 0.61 -20.28 16 18 Si 0.91 18.63 29.57 -169.99 -5.03 13.60 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 C -0.08 -2.07 8.18 -38.43 -0.31 -2.39 16 23 C 0.15 1.65 5.04 -83.69 -0.42 1.23 16 24 C -0.13 -1.17 9.68 -39.39 -0.38 -1.55 16 25 C -0.11 -0.88 10.04 -39.61 -0.40 -1.27 16 26 C -0.12 -1.00 10.04 -39.55 -0.40 -1.40 16 27 C -0.11 -0.98 10.04 -39.61 -0.40 -1.37 16 28 C -0.11 -1.22 9.05 -39.39 -0.36 -1.58 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.43 8.05 -51.93 -0.42 0.01 16 31 H 0.08 0.51 6.44 -51.93 -0.33 0.18 16 32 H 0.10 1.29 7.57 -51.93 -0.39 0.90 16 33 H 0.10 1.25 8.04 -51.93 -0.42 0.84 16 34 H 0.11 2.30 7.59 -52.49 -0.40 1.90 16 35 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 37 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 38 H 0.14 3.79 5.92 -52.48 -0.31 3.48 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -32.25 377.23 -9.76 -42.01 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.20 Total: 6.13 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -4.51 Total: -11.58 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.25 Total: -27.04 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.96 Total: -28.80 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.25 -9.76 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.146 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds