Wall clock time and date at job start Tue Mar 31 2020 23:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 120.00305 * 2 1 4 4 O 1.21289 * 120.00499 * 184.96613 * 3 2 1 5 5 C 1.50700 * 119.99704 * 4.96661 * 3 2 1 6 6 O 1.45202 * 109.47434 * 180.02562 * 5 3 2 7 7 C 1.34700 * 117.00223 * 180.02562 * 6 5 3 8 8 O 1.21467 * 120.00136 * 359.97438 * 7 6 5 9 9 C 1.47775 * 120.00123 * 179.97438 * 7 6 5 10 10 C 1.39968 * 120.02834 * 359.97438 * 9 7 6 11 11 C 1.38317 * 120.35181 * 180.02562 * 10 9 7 12 12 C 1.37752 * 120.41857 * 0.02562 * 11 10 9 13 13 C 1.40756 * 120.05113 * 359.97438 * 12 11 10 14 14 C 1.41440 * 120.17593 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99835 * 30.11758 * 14 13 12 16 16 C 1.39939 * 120.00136 * 210.11554 * 14 13 12 17 17 N 1.30828 * 119.99799 * 10.70620 * 16 14 13 18 18 Si 1.86796 * 119.99911 * 190.70626 * 16 14 13 19 19 H 1.48500 * 109.47551 * 59.99957 * 18 16 14 20 20 H 1.48502 * 109.47131 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47344 * 299.99730 * 18 16 14 22 22 C 1.39044 * 120.03144 * 179.97438 * 9 7 6 23 23 C 1.39928 * 120.00180 * 180.02562 * 2 1 3 24 24 C 1.38877 * 120.07102 * 58.36934 * 23 2 1 25 25 C 1.38115 * 119.92562 * 179.79288 * 24 23 2 26 26 C 1.38281 * 120.07379 * 0.48671 * 25 24 23 27 27 C 1.38284 * 120.13927 * 359.74173 * 26 25 24 28 28 C 1.38118 * 120.07140 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47171 * 90.00324 * 1 2 3 30 30 H 1.09004 * 109.46632 * 209.99754 * 1 2 3 31 31 H 1.08997 * 109.46953 * 329.99818 * 1 2 3 32 32 H 1.09002 * 109.47121 * 60.00136 * 5 3 2 33 33 H 1.09003 * 109.47047 * 299.99955 * 5 3 2 34 34 H 1.07997 * 119.82229 * 0.02562 * 10 9 7 35 35 H 1.08002 * 119.78866 * 180.02562 * 11 10 9 36 36 H 1.08005 * 119.97493 * 179.97438 * 12 11 10 37 37 H 0.96994 * 119.99399 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.20619 * 359.70369 * 22 9 7 39 39 H 1.07994 * 120.03306 * 0.02681 * 24 23 2 40 40 H 1.08002 * 119.95799 * 180.23034 * 25 24 23 41 41 H 1.07999 * 119.92871 * 179.72450 * 26 25 24 42 42 H 1.08000 * 119.96359 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.02998 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3483 1.1691 -0.0909 5 6 1.3896 2.4698 0.1130 6 8 2.3322 3.5740 0.0894 7 6 1.8209 4.8167 0.1824 8 8 0.6204 4.9737 0.2800 9 6 2.7204 5.9890 0.1656 10 6 4.1039 5.8088 0.0537 11 6 4.9520 6.9013 0.0379 12 6 4.4456 8.1788 0.1325 13 6 3.0571 8.3801 0.2457 14 6 2.5343 9.6906 0.3436 15 1 3.0490 10.5140 -0.1293 16 6 1.3502 9.9204 1.0531 17 7 0.8394 8.9736 1.7975 18 14 0.4990 11.5791 0.9373 19 1 0.1286 11.8480 -0.4754 20 1 -0.7259 11.5666 1.7769 21 1 1.4177 12.6418 1.4190 22 6 2.1932 7.2721 0.2610 23 6 2.1646 -1.2118 -0.0005 24 6 1.9667 -2.1291 -1.0243 25 6 2.6621 -3.3225 -1.0241 26 6 3.5471 -3.6086 -0.0008 27 6 3.7428 -2.6993 1.0225 28 6 3.0541 -1.5021 1.0257 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.8316 2.4879 1.0491 33 1 0.6981 2.5650 -0.7242 34 1 4.5113 4.8114 -0.0206 35 1 6.0181 6.7517 -0.0492 36 1 5.1144 9.0268 0.1199 37 1 0.0189 9.1330 2.2895 38 1 1.1259 7.4163 0.3427 39 1 1.2727 -1.9080 -1.8215 40 1 2.5114 -4.0346 -1.8219 41 1 4.0863 -4.5444 -0.0006 42 1 4.4344 -2.9259 1.8205 43 1 3.2072 -0.7926 1.8254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051535207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:06 Heat of formation + Delta-G solvation = -77.542220 kcal Electronic energy + Delta-G solvation = -27485.131944 eV Core-core repulsion = 23459.875844 eV Total energy + Delta-G solvation = -4025.256100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99210 -41.29103 -39.58648 -39.12760 -37.43120 -36.72984 -35.58611 -32.45271 -31.92787 -31.70101 -31.39209 -29.48611 -27.76768 -27.25056 -25.12262 -23.74556 -23.38066 -22.87079 -21.64155 -20.83410 -19.76206 -18.67271 -18.23296 -18.13981 -17.92239 -17.46453 -17.06664 -16.75732 -16.60371 -16.43882 -15.60316 -15.48314 -15.19635 -14.98608 -14.62606 -14.47898 -14.36848 -14.32794 -13.98654 -13.82432 -13.64602 -13.52873 -13.31838 -12.96738 -12.81975 -12.59293 -12.54852 -12.24394 -12.18257 -12.09512 -11.97810 -11.57586 -11.43524 -11.16813 -11.10756 -10.59230 -9.92676 -9.64775 -9.42046 -9.38093 -8.63126 -6.42375 0.06188 0.20792 0.41196 0.94749 1.07558 1.23690 1.39626 1.46669 1.52265 1.73416 2.04118 2.21496 2.73980 2.76644 3.20850 3.58534 3.78115 3.86827 3.94223 3.96825 4.01290 4.09265 4.24012 4.38416 4.45547 4.49508 4.56523 4.58395 4.64636 4.76706 4.79376 5.02264 5.04796 5.06877 5.08795 5.28144 5.33630 5.38510 5.41928 5.54974 5.55286 5.77545 5.85248 5.95468 5.99494 6.03875 6.19896 6.51154 6.68855 6.82761 6.86280 6.87206 8.34553 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002106 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.831366 B =13295.074329 C =14087.600861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.565 5.565 3 C 0.520 3.480 4 O -0.546 6.546 5 C 0.045 3.955 6 O -0.340 6.340 7 C 0.521 3.479 8 O -0.533 6.533 9 C -0.131 4.131 10 C -0.177 4.177 11 C -0.103 4.103 12 C -0.194 4.194 13 C 0.065 3.935 14 C -0.495 4.495 15 H 0.087 0.913 16 C 0.027 3.973 17 N -0.836 5.836 18 Si 0.988 3.012 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.255 1.255 22 C -0.107 4.107 23 C 0.119 3.881 24 C -0.129 4.129 25 C -0.108 4.108 26 C -0.123 4.123 27 C -0.114 4.114 28 C -0.133 4.133 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.287 0.713 38 H 0.110 0.890 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.142 0.858 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 -22.909 -3.060 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.295 5.295 3 C 0.308 3.692 4 O -0.422 6.422 5 C -0.031 4.031 6 O -0.256 6.256 7 C 0.369 3.631 8 O -0.424 6.424 9 C -0.133 4.133 10 C -0.197 4.197 11 C -0.121 4.121 12 C -0.214 4.214 13 C 0.063 3.937 14 C -0.524 4.524 15 H 0.105 0.895 16 C -0.186 4.186 17 N -0.462 5.462 18 Si 0.808 3.192 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.179 1.179 22 C -0.127 4.127 23 C 0.029 3.971 24 C -0.149 4.149 25 C -0.126 4.126 26 C -0.141 4.141 27 C -0.133 4.133 28 C -0.153 4.153 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.156 0.844 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.158 0.842 40 H 0.174 0.826 41 H 0.170 0.830 42 H 0.160 0.840 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.153 -22.906 -2.911 23.190 hybrid contribution -0.678 0.838 0.357 1.136 sum -2.831 -22.067 -2.554 22.394 Atomic orbital electron populations 1.22347 0.75193 1.05595 1.04609 1.45336 1.08822 1.02714 1.72673 1.20348 0.87502 0.85204 0.76159 1.90756 1.15604 1.87310 1.48500 1.22906 0.91098 0.82316 1.06804 1.86623 1.40290 1.14581 1.84111 1.21638 0.87148 0.82856 0.71484 1.90741 1.17171 1.86734 1.47800 1.19036 0.93639 0.89871 1.10725 1.20961 0.91352 0.99052 1.08303 1.20955 0.99606 0.91890 0.99668 1.21575 0.94420 0.96935 1.08441 1.17927 0.91836 0.93615 0.90337 1.19804 1.07793 0.94063 1.30788 0.89472 1.26843 0.96680 1.02821 0.92284 1.69837 1.19028 1.36040 1.21296 0.85160 0.77710 0.76859 0.79449 1.18363 1.19709 1.17949 1.21468 1.00019 0.90252 1.00980 1.17847 0.96995 0.86391 0.95885 1.21371 1.01858 0.94840 0.96812 1.21420 0.95504 0.96438 0.99256 1.21581 0.98317 1.00297 0.93875 1.21319 0.99032 0.92965 0.99942 1.21276 0.98227 0.97968 0.97828 0.89629 0.88426 0.89189 0.86228 0.85927 0.85954 0.84368 0.86373 0.90225 0.87196 0.84151 0.82649 0.82958 0.84041 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.02 127.77 1.28 2.04 16 2 N -0.57 -12.18 2.97 -654.57 -1.94 -14.13 16 3 C 0.52 15.24 7.55 87.66 0.66 15.90 16 4 O -0.55 -21.00 15.94 15.74 0.25 -20.75 16 5 C 0.05 1.31 4.41 71.24 0.31 1.62 16 6 O -0.34 -13.47 8.99 -49.71 -0.45 -13.91 16 7 C 0.52 23.68 7.90 70.34 0.56 24.24 16 8 O -0.53 -25.43 16.12 19.94 0.32 -25.11 16 9 C -0.13 -6.51 5.87 -20.14 -0.12 -6.63 16 10 C -0.18 -7.96 9.62 22.71 0.22 -7.74 16 11 C -0.10 -4.39 10.01 22.17 0.22 -4.16 16 12 C -0.19 -9.12 9.78 22.77 0.22 -8.89 16 13 C 0.06 3.49 5.53 -21.32 -0.12 3.37 16 14 C -0.49 -26.26 9.05 23.47 0.21 -26.05 16 15 H 0.09 4.33 7.87 -2.91 -0.02 4.31 16 16 C 0.03 1.39 5.24 85.25 0.45 1.84 16 17 N -0.84 -45.25 10.94 21.83 0.24 -45.02 16 18 Si 0.99 38.53 29.57 68.60 2.03 40.56 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 22 C -0.11 -5.88 8.18 23.02 0.19 -5.70 16 23 C 0.12 2.61 5.04 38.15 0.19 2.80 16 24 C -0.13 -2.17 9.68 22.39 0.22 -1.95 16 25 C -0.11 -1.43 10.04 22.25 0.22 -1.21 16 26 C -0.12 -1.67 10.04 22.29 0.22 -1.44 16 27 C -0.11 -2.00 10.04 22.25 0.22 -1.77 16 28 C -0.13 -3.05 9.05 22.39 0.20 -2.85 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.86 8.05 -2.39 -0.02 0.84 16 31 H 0.09 0.96 6.44 -2.39 -0.02 0.95 16 32 H 0.12 2.99 7.57 -2.39 -0.02 2.97 16 33 H 0.12 2.96 8.04 -2.39 -0.02 2.94 16 34 H 0.12 5.10 7.59 -2.91 -0.02 5.08 16 35 H 0.14 4.74 8.06 -2.91 -0.02 4.71 16 36 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 37 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 38 H 0.11 6.51 5.92 -2.91 -0.02 6.50 16 39 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 43 H 0.11 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -73.17 377.23 6.85 -66.32 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 1.03 Total: 28.63 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 5.37 Total: -16.59 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -1.70 Total: -59.14 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: 0.13 Total: -59.77 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -73.17 6.85 -66.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.223 kcal (2) G-P(sol) polarization free energy of solvation -73.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds