Wall clock time and date at job start Tue Mar 31 2020 22:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46902 * 2 1 4 4 C 1.46499 * 120.00089 * 270.00152 * 3 2 1 5 5 C 1.50704 * 109.47295 * 270.00265 * 4 3 2 6 6 H 1.07998 * 119.99890 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00122 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00090 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46886 * 59.99977 * 9 7 5 11 11 H 1.48499 * 109.47226 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47144 * 300.00102 * 9 7 5 13 13 C 1.34769 * 119.99870 * 89.99950 * 3 2 1 14 14 O 1.21281 * 119.99961 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00250 * 0.02562 * 13 3 2 16 16 O 1.45203 * 109.47466 * 179.97438 * 15 13 3 17 17 C 1.34232 * 117.00244 * 179.97438 * 16 15 13 18 18 O 1.20829 * 119.99475 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00060 * 179.97438 * 17 16 15 20 20 O 1.42895 * 109.46892 * 179.97438 * 19 17 16 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 17 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 1.09000 * 109.46797 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47182 * 299.99765 * 1 2 3 30 30 H 1.08996 * 109.47384 * 60.00096 * 1 2 3 31 31 H 1.09006 * 109.47023 * 240.00510 * 2 1 3 32 32 H 1.08996 * 109.47384 * 119.99904 * 2 1 3 33 33 H 1.09007 * 109.46982 * 30.00079 * 4 3 2 34 34 H 1.09002 * 109.47121 * 149.99976 * 4 3 2 35 35 H 0.97005 * 120.00388 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47497 * 59.99774 * 15 13 3 37 37 H 1.09004 * 109.47233 * 299.99520 * 15 13 3 38 38 H 1.09005 * 109.46403 * 60.00524 * 19 17 16 39 39 H 1.08995 * 109.47035 * 300.00591 * 19 17 16 40 40 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 41 41 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 42 42 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 43 43 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7039 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9136 2.0977 -3.4165 10 1 6.1415 0.6411 -3.5944 11 1 6.1610 2.7977 -4.7026 12 1 6.8408 2.6209 -2.3812 13 6 2.2428 2.0166 1.1671 14 8 2.6475 3.1599 1.1672 15 6 1.9923 1.3060 2.4722 16 8 2.3072 2.1954 3.5759 17 6 2.1362 1.7117 4.8163 18 8 1.7370 0.5823 4.9745 19 6 2.4432 2.5768 6.0115 20 8 2.1830 1.8433 7.2098 21 6 2.4108 2.4837 8.3872 22 6 2.8694 3.7928 8.3880 23 6 3.1054 4.4407 9.5851 24 6 2.8738 3.7876 10.7838 25 9 3.0993 4.4243 11.9538 26 6 2.4111 2.4827 10.7845 27 6 2.1792 1.8306 9.5888 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.5815 1.6878 -2.0284 34 1 2.0954 3.1411 -1.1383 35 1 3.6751 3.5173 -4.4435 36 1 2.6228 0.4187 2.5298 37 1 0.9444 1.0115 2.5302 38 1 1.8142 3.4668 5.9868 39 1 3.4920 2.8724 5.9862 40 1 3.0452 4.3042 7.4531 41 1 3.4663 5.4586 9.5860 42 1 2.2313 1.9743 11.7202 43 1 1.8179 0.8129 9.5896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060713961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:52 Heat of formation + Delta-G solvation = -166.412560 kcal Electronic energy + Delta-G solvation = -27922.533000 eV Core-core repulsion = 23462.653968 eV Total energy + Delta-G solvation = -4459.879032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.20821 -41.05733 -40.27741 -39.02603 -37.70540 -36.45066 -35.38118 -32.89204 -31.83686 -30.74033 -30.22806 -29.54105 -28.34899 -26.47807 -23.79031 -23.14887 -22.95285 -22.53859 -21.22260 -19.05071 -18.81039 -17.93284 -17.77497 -17.30919 -17.14519 -16.60451 -16.44083 -16.10854 -15.89648 -15.78866 -15.34344 -15.15728 -14.54755 -14.47252 -14.17263 -13.95526 -13.53307 -13.47355 -13.45429 -13.09922 -12.88647 -12.72169 -12.51525 -12.19156 -12.10384 -11.69556 -11.44219 -11.40237 -11.28463 -11.01565 -10.95348 -10.72229 -10.68639 -10.57786 -10.19366 -9.72940 -9.68598 -9.09252 -8.60269 -8.48586 -7.82483 -6.09920 -4.15164 0.66025 0.72983 1.67620 1.88277 3.02432 3.08255 3.16045 3.28877 3.33472 3.36888 3.73643 3.87156 4.15820 4.27499 4.37985 4.43016 4.54146 4.55331 4.66637 4.76672 4.82388 5.02614 5.08101 5.10960 5.24692 5.29631 5.38423 5.52901 5.63372 5.66885 5.67526 5.70512 5.93808 6.12191 6.14651 6.17620 6.39697 6.74414 6.93155 7.33502 7.39467 7.48087 7.85538 8.15247 8.22173 8.77277 8.92633 9.49977 10.98140 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.001861 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.962675 B =15039.719601 C =16007.197578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.051 3.949 16 O -0.324 6.324 17 C 0.464 3.536 18 O -0.488 6.488 19 C 0.068 3.932 20 O -0.291 6.291 21 C 0.123 3.877 22 C -0.181 4.181 23 C -0.110 4.110 24 C 0.059 3.941 25 F -0.141 7.141 26 C -0.113 4.113 27 C -0.118 4.118 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -2.982 24.593 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.239 6.239 17 C 0.305 3.695 18 O -0.374 6.374 19 C -0.008 4.008 20 O -0.204 6.204 21 C 0.078 3.922 22 C -0.200 4.200 23 C -0.129 4.129 24 C 0.040 3.960 25 F -0.120 7.120 26 C -0.131 4.131 27 C -0.136 4.136 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.623 -2.776 24.394 24.982 hybrid contribution 1.020 -0.057 -0.327 1.072 sum -3.603 -2.832 24.067 24.499 Atomic orbital electron populations 1.22233 0.96462 1.01767 1.02432 1.21529 0.93805 0.83882 1.03112 1.48215 1.63666 1.13427 1.07091 1.19345 0.96514 0.93705 0.77482 1.21377 0.96817 1.32248 1.06443 0.92427 1.24932 0.97944 0.94831 0.96340 1.69918 1.35770 1.33196 1.14350 0.86541 0.84647 0.78279 0.77849 1.20224 1.21146 1.20145 1.19654 0.79838 0.87155 0.84229 1.90722 1.44553 1.17486 1.86710 1.23060 1.03014 0.92557 0.83923 1.86495 1.78616 1.45102 1.13729 1.22817 0.75424 0.86671 0.84599 1.90718 1.40840 1.19376 1.86480 1.21910 1.04533 0.93587 0.80755 1.86094 1.82625 1.40396 1.11284 1.18999 0.96461 0.91225 0.85552 1.21219 1.05012 0.94295 0.99443 1.20973 1.00367 1.01013 0.90553 1.17616 1.04859 0.92053 0.81461 1.91502 1.92723 1.81825 1.45933 1.20980 0.99928 0.93184 0.99048 1.20308 1.03381 1.01397 0.88536 0.91837 0.93140 0.91740 0.89325 0.91719 0.94565 0.93672 0.92577 0.88344 0.88419 0.87055 0.87004 0.83928 0.84149 0.83861 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.10 1.52 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.91 2.46 -175.06 -0.43 -12.34 16 4 C 0.25 6.24 5.16 -5.19 -0.03 6.22 16 5 C -0.53 -14.61 9.39 -34.44 -0.32 -14.94 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.51 10.23 7.75 -10.99 -0.09 10.15 16 14 O -0.52 -12.82 16.08 -14.10 -0.23 -13.05 16 15 C 0.05 0.78 4.50 36.00 0.16 0.94 16 16 O -0.32 -4.87 9.76 -45.91 -0.45 -5.32 16 17 C 0.46 5.94 8.03 36.01 0.29 6.23 16 18 O -0.49 -7.41 16.25 -25.48 -0.41 -7.83 16 19 C 0.07 0.61 5.33 36.01 0.19 0.80 16 20 O -0.29 -2.98 9.67 -39.54 -0.38 -3.36 16 21 C 0.12 1.06 6.69 -39.23 -0.26 0.80 16 22 C -0.18 -1.30 9.04 -39.44 -0.36 -1.65 16 23 C -0.11 -0.79 10.02 -39.53 -0.40 -1.18 16 24 C 0.06 0.48 7.30 -39.42 -0.29 0.19 16 25 F -0.14 -1.26 17.27 2.25 0.04 -1.22 16 26 C -0.11 -0.79 10.02 -39.53 -0.40 -1.18 16 27 C -0.12 -0.90 9.99 -39.44 -0.39 -1.29 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.61 7.22 -51.93 -0.38 0.23 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.10 1.34 7.39 -51.93 -0.38 0.96 16 37 H 0.10 1.28 7.18 -51.93 -0.37 0.90 16 38 H 0.11 0.72 7.65 -51.93 -0.40 0.32 16 39 H 0.11 0.75 7.67 -51.93 -0.40 0.35 16 40 H 0.14 0.74 6.30 -52.49 -0.33 0.41 16 41 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -34.87 380.45 -7.51 -42.39 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.47 Total: -2.62 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.63 Total: 6.42 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.31 Total: -37.58 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -1.47 Total: -29.56 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.87 -7.51 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060713961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.025 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds