Wall clock time and date at job start Tue Mar 31 2020 22:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46902 * 2 1 4 4 C 1.46499 * 120.00089 * 270.00152 * 3 2 1 5 5 C 1.50704 * 109.47295 * 270.00265 * 4 3 2 6 6 H 1.07998 * 119.99890 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00122 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00090 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46886 * 59.99977 * 9 7 5 11 11 H 1.48499 * 109.47226 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47144 * 300.00102 * 9 7 5 13 13 C 1.34769 * 119.99870 * 89.99950 * 3 2 1 14 14 O 1.21281 * 119.99961 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00250 * 0.02562 * 13 3 2 16 16 O 1.45203 * 109.47466 * 179.97438 * 15 13 3 17 17 C 1.34232 * 117.00244 * 179.97438 * 16 15 13 18 18 O 1.20829 * 119.99475 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00060 * 179.97438 * 17 16 15 20 20 O 1.42895 * 109.46892 * 179.97438 * 19 17 16 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 17 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 1.09000 * 109.46797 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47182 * 299.99765 * 1 2 3 30 30 H 1.08996 * 109.47384 * 60.00096 * 1 2 3 31 31 H 1.09006 * 109.47023 * 240.00510 * 2 1 3 32 32 H 1.08996 * 109.47384 * 119.99904 * 2 1 3 33 33 H 1.09007 * 109.46982 * 30.00079 * 4 3 2 34 34 H 1.09002 * 109.47121 * 149.99976 * 4 3 2 35 35 H 0.97005 * 120.00388 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47497 * 59.99774 * 15 13 3 37 37 H 1.09004 * 109.47233 * 299.99520 * 15 13 3 38 38 H 1.09005 * 109.46403 * 60.00524 * 19 17 16 39 39 H 1.08995 * 109.47035 * 300.00591 * 19 17 16 40 40 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 41 41 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 42 42 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 43 43 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7039 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9136 2.0977 -3.4165 10 1 6.1415 0.6411 -3.5944 11 1 6.1610 2.7977 -4.7026 12 1 6.8408 2.6209 -2.3812 13 6 2.2428 2.0166 1.1671 14 8 2.6475 3.1599 1.1672 15 6 1.9923 1.3060 2.4722 16 8 2.3072 2.1954 3.5759 17 6 2.1362 1.7117 4.8163 18 8 1.7370 0.5823 4.9745 19 6 2.4432 2.5768 6.0115 20 8 2.1830 1.8433 7.2098 21 6 2.4108 2.4837 8.3872 22 6 2.8694 3.7928 8.3880 23 6 3.1054 4.4407 9.5851 24 6 2.8738 3.7876 10.7838 25 9 3.0993 4.4243 11.9538 26 6 2.4111 2.4827 10.7845 27 6 2.1792 1.8306 9.5888 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.5815 1.6878 -2.0284 34 1 2.0954 3.1411 -1.1383 35 1 3.6751 3.5173 -4.4435 36 1 2.6228 0.4187 2.5298 37 1 0.9444 1.0115 2.5302 38 1 1.8142 3.4668 5.9868 39 1 3.4920 2.8724 5.9862 40 1 3.0452 4.3042 7.4531 41 1 3.4663 5.4586 9.5860 42 1 2.2313 1.9743 11.7202 43 1 1.8179 0.8129 9.5896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060713961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:51 Heat of formation + Delta-G solvation = -186.235961 kcal Electronic energy + Delta-G solvation = -27923.392607 eV Core-core repulsion = 23462.653968 eV Total energy + Delta-G solvation = -4460.738639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83333 -42.00321 -41.12593 -40.47928 -38.39500 -37.55528 -36.97506 -34.93470 -32.39484 -31.81995 -31.43408 -30.57188 -29.39482 -28.12166 -24.96625 -24.38317 -24.08267 -23.39447 -22.16723 -20.31259 -19.71708 -18.88627 -18.62504 -18.48037 -18.22859 -18.08138 -17.64989 -17.25460 -16.98295 -16.72412 -16.50422 -16.13663 -15.84092 -15.69628 -15.04912 -14.78570 -14.69867 -14.57041 -14.41919 -14.04306 -13.99515 -13.79699 -13.61807 -13.38115 -13.35989 -13.27316 -13.08434 -12.66007 -12.51795 -12.22982 -12.07502 -12.05395 -12.00894 -11.82139 -11.73426 -11.65008 -10.74542 -10.63789 -10.20640 -9.54705 -9.20147 -8.22707 -6.37154 0.13009 0.15799 0.75874 0.91323 1.38009 1.41768 1.48830 1.61238 2.05990 2.38214 2.53151 2.55200 3.07392 3.30390 3.36755 3.42093 3.68849 3.78644 3.89183 3.92342 3.97499 3.99903 4.15356 4.15929 4.29594 4.38251 4.53719 4.59260 4.87499 4.89725 4.95077 5.03286 5.09756 5.11207 5.12490 5.16833 5.21141 5.36620 5.54097 5.61611 5.79434 6.04358 6.14547 6.44461 6.61938 6.71948 7.20793 7.36611 8.84360 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.001861 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.962675 B =15039.719601 C =16007.197578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.063 3.937 16 O -0.340 6.340 17 C 0.467 3.533 18 O -0.514 6.514 19 C 0.069 3.931 20 O -0.311 6.311 21 C 0.109 3.891 22 C -0.180 4.180 23 C -0.113 4.113 24 C 0.043 3.957 25 F -0.149 7.149 26 C -0.111 4.111 27 C -0.125 4.125 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.029 0.971 34 H 0.001 0.999 35 H 0.267 0.733 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.162 0.838 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -4.229 25.925 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.013 4.013 16 O -0.256 6.256 17 C 0.310 3.690 18 O -0.402 6.402 19 C -0.006 4.006 20 O -0.225 6.225 21 C 0.064 3.936 22 C -0.198 4.198 23 C -0.132 4.132 24 C 0.023 3.977 25 F -0.128 7.128 26 C -0.129 4.129 27 C -0.144 4.144 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.047 0.953 34 H 0.019 0.981 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.181 0.819 41 H 0.174 0.826 42 H 0.179 0.821 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.196 -4.073 25.749 26.404 hybrid contribution 0.832 0.328 -0.688 1.128 sum -3.364 -3.745 25.061 25.562 Atomic orbital electron populations 1.22178 0.94345 1.03764 1.01886 1.21871 0.95536 0.80992 1.04444 1.48200 1.63535 1.15232 1.05696 1.18795 0.95547 0.91724 0.79752 1.21676 0.97828 1.32222 1.06644 0.92648 1.25842 1.02339 0.94472 0.96449 1.70038 1.37770 1.34022 1.14784 0.85481 0.79090 0.78987 0.77338 1.18522 1.20467 1.20284 1.20496 0.78401 0.86657 0.85770 1.90685 1.47089 1.20083 1.87726 1.22884 1.05002 0.91945 0.81508 1.86496 1.79014 1.45534 1.14548 1.23511 0.74261 0.86759 0.84477 1.90702 1.42223 1.20665 1.86566 1.22113 1.06564 0.93050 0.78870 1.86046 1.83157 1.41350 1.11907 1.19192 0.97327 0.91934 0.85170 1.21431 1.04282 0.93801 1.00308 1.21207 0.99919 1.01787 0.90249 1.17884 1.05622 0.92630 0.81531 1.91480 1.92887 1.82023 1.46442 1.21171 0.99186 0.92927 0.99664 1.20490 1.03455 1.01904 0.88552 0.88491 0.92306 0.93706 0.90058 0.88304 0.95289 0.98096 0.92376 0.86219 0.85775 0.84362 0.84534 0.81897 0.82552 0.82083 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.24 71.98 0.74 -3.07 16 2 C 0.09 2.67 5.93 86.38 0.51 3.18 16 3 N -0.59 -24.14 2.46 -826.15 -2.03 -26.16 16 4 C 0.26 13.74 5.16 85.63 0.44 14.19 16 5 C -0.55 -30.67 9.39 25.60 0.24 -30.42 16 6 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -55.08 13.29 21.44 0.28 -54.80 16 9 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 10 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 C 0.50 20.24 7.75 87.66 0.68 20.92 16 14 O -0.58 -29.40 16.08 15.76 0.25 -29.14 16 15 C 0.06 1.80 4.50 71.23 0.32 2.12 16 16 O -0.34 -9.73 9.76 -45.08 -0.44 -10.17 16 17 C 0.47 11.08 8.03 71.24 0.57 11.66 16 18 O -0.51 -14.66 16.25 28.39 0.46 -14.19 16 19 C 0.07 1.07 5.33 71.24 0.38 1.45 16 20 O -0.31 -5.81 9.67 -73.92 -0.71 -6.52 16 21 C 0.11 1.69 6.69 22.50 0.15 1.84 16 22 C -0.18 -2.19 9.04 22.36 0.20 -1.99 16 23 C -0.11 -1.42 10.02 22.30 0.22 -1.19 16 24 C 0.04 0.63 7.30 22.37 0.16 0.79 16 25 F -0.15 -2.54 17.27 44.97 0.78 -1.76 16 26 C -0.11 -1.41 10.02 22.30 0.22 -1.18 16 27 C -0.13 -1.75 9.99 22.36 0.22 -1.53 16 28 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.08 2.45 8.07 -2.38 -0.02 2.43 16 32 H 0.10 2.17 6.44 -2.39 -0.02 2.15 16 33 H 0.03 1.53 8.07 -2.38 -0.02 1.52 16 34 H 0.00 0.06 7.42 -2.39 -0.02 0.04 16 35 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 36 H 0.12 2.93 7.39 -2.39 -0.02 2.91 16 37 H 0.12 2.90 7.18 -2.38 -0.02 2.88 16 38 H 0.14 1.38 7.65 -2.38 -0.02 1.36 16 39 H 0.14 1.43 7.67 -2.39 -0.02 1.41 16 40 H 0.16 1.20 6.30 -2.91 -0.02 1.18 16 41 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -78.58 380.45 7.19 -71.39 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.04 Total: 7.56 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 5.53 Total: 17.68 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -1.74 Total: -80.96 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: -0.44 Total: -60.02 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -78.58 7.19 -71.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060713961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.844 kcal (2) G-P(sol) polarization free energy of solvation -78.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds