Wall clock time and date at job start Tue Mar 31 2020 23:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36019 * 117.00046 * 2 1 4 4 C 1.38446 * 120.02446 * 359.96983 * 3 2 1 5 5 C 1.38290 * 119.84716 * 180.02562 * 4 3 2 6 6 C 1.38114 * 120.19083 * 0.07869 * 5 4 3 7 7 C 1.38604 * 120.40213 * 359.97438 * 6 5 4 8 8 C 1.38436 * 119.60506 * 359.85794 * 7 6 5 9 9 N 1.40217 * 120.84745 * 180.28236 * 8 7 6 10 10 S 1.65603 * 120.54637 * 166.61836 * 9 8 7 11 11 O 1.42098 * 104.27699 * 62.92480 * 10 9 8 12 12 O 1.42105 * 104.27496 * 190.77553 * 10 9 8 13 13 C 1.81392 * 104.45274 * 306.84832 * 10 9 8 14 14 C 1.53002 * 109.47271 * 180.02562 * 13 10 9 15 15 C 1.52996 * 109.47069 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.47108 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00016 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99718 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47062 * 90.00606 * 20 18 16 22 22 H 1.48497 * 109.47014 * 209.99818 * 20 18 16 23 23 H 1.48488 * 109.47287 * 330.00341 * 20 18 16 24 24 C 1.46930 * 118.90188 * 346.59554 * 9 8 7 25 25 C 1.53429 * 107.83441 * 44.50126 * 24 9 8 26 26 C 1.50604 * 118.90152 * 179.64927 * 7 6 5 27 27 H 1.09004 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47578 * 300.00559 * 1 2 3 29 29 H 1.09008 * 109.47037 * 60.00635 * 1 2 3 30 30 H 1.07997 * 120.07772 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.90161 * 180.10385 * 5 4 3 32 32 H 1.07996 * 119.79451 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47043 * 300.00254 * 13 10 9 34 34 H 1.09008 * 109.47135 * 60.00003 * 13 10 9 35 35 H 1.08994 * 109.46928 * 300.00084 * 14 13 10 36 36 H 1.08996 * 109.46761 * 60.00454 * 14 13 10 37 37 H 1.09006 * 109.47407 * 299.99967 * 15 14 13 38 38 H 1.08999 * 109.47684 * 59.99863 * 15 14 13 39 39 H 0.97007 * 119.99787 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.79599 * 164.10379 * 24 9 8 41 41 H 1.08999 * 109.79682 * 284.90295 * 24 9 8 42 42 H 1.09001 * 109.57267 * 56.64741 * 25 24 9 43 43 H 1.09001 * 109.57498 * 177.02360 * 25 24 9 44 44 H 1.09000 * 109.27350 * 279.70087 * 26 7 6 45 45 H 1.08997 * 109.27157 * 39.20856 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2929 2.3734 -0.0006 5 6 1.9246 3.6036 -0.0012 6 6 3.3038 3.6762 -0.0027 7 6 4.0671 2.5193 -0.0032 8 6 3.4391 1.2856 0.0008 9 7 4.1857 0.0987 0.0064 10 16 3.4590 -1.3512 0.3412 11 8 2.5167 -1.5216 -0.7086 12 8 4.5422 -2.2559 0.5073 13 6 2.6100 -1.0780 1.9207 14 6 1.8922 -2.3616 2.3426 15 6 1.1755 -2.1309 3.6746 16 6 0.4690 -3.3954 4.0905 17 1 0.5251 -4.2754 3.4669 18 6 -0.2490 -3.4288 5.2670 19 7 -0.3178 -2.3571 6.0261 20 14 -1.1254 -4.9961 5.7821 21 1 -0.2111 -5.8263 6.6067 22 1 -2.3316 -4.6505 6.5763 23 1 -1.5301 -5.7572 4.5731 24 6 5.6233 0.1627 -0.2903 25 6 6.2118 1.3457 0.4896 26 6 5.5684 2.6378 -0.0130 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.2143 2.3188 -0.0007 31 1 1.3376 4.5101 0.0000 32 1 3.7904 4.6403 -0.0027 33 1 3.3395 -0.8029 2.6825 34 1 1.8820 -0.2745 1.8077 35 1 1.1628 -2.6371 1.5810 36 1 2.6204 -3.1646 2.4558 37 1 1.9046 -1.8551 4.4365 38 1 0.4473 -1.3279 3.5611 39 1 -0.8228 -2.3808 6.8541 40 1 6.1064 -0.7628 0.0227 41 1 5.7732 0.3141 -1.3593 42 1 6.0015 1.2235 1.5521 43 1 7.2894 1.3876 0.3312 44 1 5.9071 2.8352 -1.0300 45 1 5.8683 3.4632 0.6326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068897383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:53 Heat of formation + Delta-G solvation = -73.197364 kcal Electronic energy + Delta-G solvation = -29088.703792 eV Core-core repulsion = 25199.080050 eV Total energy + Delta-G solvation = -3889.623742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84551 -38.60658 -36.63427 -36.38515 -35.53362 -34.59102 -33.40726 -32.15879 -30.73734 -29.31683 -27.78080 -27.21897 -25.37402 -23.77854 -23.37362 -22.44988 -20.56362 -20.04554 -19.07680 -17.93331 -17.41903 -17.15387 -16.54723 -16.29133 -15.88043 -15.63580 -15.14046 -14.93767 -14.50755 -14.38637 -14.15519 -14.01102 -13.76212 -13.60574 -13.08514 -12.81314 -12.53918 -12.24238 -12.07149 -11.95316 -11.83332 -11.78437 -11.71403 -11.52365 -11.28608 -11.08968 -10.97142 -10.90616 -10.80816 -10.76694 -10.58822 -10.42233 -10.30936 -9.87592 -9.35498 -9.10567 -8.50445 -8.40103 -7.78074 -6.05002 -4.08007 0.52693 1.20842 1.33977 2.69597 3.20955 3.30148 3.36378 3.40203 3.59467 3.97471 4.28041 4.42803 4.53247 4.67588 4.72510 4.83826 4.89633 4.99071 5.07765 5.20811 5.27812 5.30730 5.33416 5.37778 5.40431 5.41931 5.51314 5.56727 5.61151 5.66693 5.82469 5.86348 5.95246 6.02852 6.16223 6.32923 6.34178 6.44102 6.48491 6.55569 6.72671 6.91233 7.33018 7.59275 7.69708 7.93443 8.34198 8.98393 9.56589 11.06085 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.003704 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.746914 B = 7556.922386 C = 8201.054534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.301 6.301 3 C 0.063 3.937 4 C -0.169 4.169 5 C -0.109 4.109 6 C -0.126 4.126 7 C -0.085 4.085 8 C 0.157 3.843 9 N -0.937 5.937 10 S 2.597 3.403 11 O -0.921 6.921 12 O -0.970 6.970 13 C -0.601 4.601 14 C -0.099 4.099 15 C 0.033 3.967 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.107 3.893 25 C -0.135 4.135 26 C -0.074 4.074 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.141 0.859 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.301 14.511 -13.823 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.216 6.216 3 C 0.015 3.985 4 C -0.189 4.189 5 C -0.128 4.128 6 C -0.145 4.145 7 C -0.089 4.089 8 C 0.060 3.940 9 N -0.761 5.761 10 S 2.697 3.303 11 O -0.911 6.911 12 O -0.961 6.961 13 C -0.733 4.733 14 C -0.138 4.138 15 C -0.005 4.005 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.017 4.017 25 C -0.173 4.173 26 C -0.111 4.111 27 H 0.125 0.875 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.438 13.489 -14.259 21.779 hybrid contribution -0.949 -0.148 0.936 1.341 sum 8.490 13.340 -13.323 20.677 Atomic orbital electron populations 1.23067 0.77400 1.04999 1.00940 1.86613 1.23108 1.23817 1.88046 1.18928 0.90527 0.87037 1.01997 1.21041 1.00184 0.91442 1.06188 1.20820 0.94445 0.97020 1.00528 1.20823 0.93609 0.97246 1.02861 1.19247 0.95855 0.90530 1.03270 1.16553 0.86660 0.86734 1.04036 1.56060 1.17383 1.21671 1.80998 1.05535 0.74162 0.72139 0.78503 1.93583 1.62987 1.82166 1.52334 1.93534 1.53900 1.60676 1.88002 1.30820 1.13073 1.10345 1.19104 1.21437 0.98868 0.91162 1.02379 1.19033 0.94933 0.97280 0.89249 1.21257 1.31145 0.97805 1.06105 0.92422 1.25009 0.96487 0.96323 0.96477 1.69964 1.41844 1.28151 1.13449 0.86580 0.79196 0.83484 0.78702 1.20582 1.21194 1.19752 1.21751 0.78543 1.01118 1.00334 1.21857 1.00313 0.94213 1.00960 1.20372 0.90166 0.98415 1.02138 0.87470 0.92304 0.92594 0.84687 0.85679 0.85701 0.86271 0.84122 0.91732 0.91990 0.96259 0.96208 0.92939 0.87473 0.90779 0.90636 0.89760 0.90372 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.64 101.05 0.97 1.36 16 2 O -0.30 -4.70 2.34 -45.48 -0.11 -4.81 16 3 C 0.06 0.90 5.59 -39.05 -0.22 0.68 16 4 C -0.17 -2.00 9.04 -39.49 -0.36 -2.36 16 5 C -0.11 -1.10 10.03 -39.61 -0.40 -1.50 16 6 C -0.13 -1.24 9.66 -39.49 -0.38 -1.62 16 7 C -0.08 -0.95 5.76 -104.46 -0.60 -1.55 16 8 C 0.16 2.17 6.12 -83.49 -0.51 1.66 16 9 N -0.94 -13.43 3.21 -57.95 -0.19 -13.61 16 10 S 2.60 44.68 4.80 -107.50 -0.52 44.16 16 11 O -0.92 -17.55 14.58 -67.72 -0.99 -18.53 16 12 O -0.97 -18.49 16.29 -57.54 -0.94 -19.43 16 13 C -0.60 -10.60 5.08 37.16 0.19 -10.41 16 14 C -0.10 -2.09 5.16 -26.73 -0.14 -2.22 16 15 C 0.03 0.86 4.97 -27.88 -0.14 0.72 16 16 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 20 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.11 1.21 6.45 -3.59 -0.02 1.19 16 25 C -0.13 -1.18 6.11 -26.59 -0.16 -1.35 16 26 C -0.07 -0.62 5.77 -28.02 -0.16 -0.78 16 27 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 29 H 0.06 0.59 7.66 -51.92 -0.40 0.20 16 30 H 0.14 1.34 6.30 -52.49 -0.33 1.01 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 34 H 0.14 2.38 4.92 -51.92 -0.26 2.12 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.11 1.25 6.65 -51.93 -0.35 0.90 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -34.72 364.21 -10.63 -45.35 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.76 Total: 0.36 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: -2.34 Total: -29.70 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.55 Total: -39.41 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -2.03 Total: -42.77 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 44.68 SS G_CDS: -0.52 Total: 44.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.72 -10.63 -45.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068897383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.844 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds