Wall clock time and date at job start Tue Mar 31 2020 23:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36019 * 117.00046 * 2 1 4 4 C 1.38446 * 120.02446 * 359.96983 * 3 2 1 5 5 C 1.38290 * 119.84716 * 180.02562 * 4 3 2 6 6 C 1.38114 * 120.19083 * 0.07869 * 5 4 3 7 7 C 1.38604 * 120.40213 * 359.97438 * 6 5 4 8 8 C 1.38436 * 119.60506 * 359.85794 * 7 6 5 9 9 N 1.40217 * 120.84745 * 180.28236 * 8 7 6 10 10 S 1.65603 * 120.54637 * 166.61836 * 9 8 7 11 11 O 1.42098 * 104.27699 * 62.92480 * 10 9 8 12 12 O 1.42105 * 104.27496 * 190.77553 * 10 9 8 13 13 C 1.81392 * 104.45274 * 306.84832 * 10 9 8 14 14 C 1.53002 * 109.47271 * 180.02562 * 13 10 9 15 15 C 1.52996 * 109.47069 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.47108 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00016 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99718 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47062 * 90.00606 * 20 18 16 22 22 H 1.48497 * 109.47014 * 209.99818 * 20 18 16 23 23 H 1.48488 * 109.47287 * 330.00341 * 20 18 16 24 24 C 1.46930 * 118.90188 * 346.59554 * 9 8 7 25 25 C 1.53429 * 107.83441 * 44.50126 * 24 9 8 26 26 C 1.50604 * 118.90152 * 179.64927 * 7 6 5 27 27 H 1.09004 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47578 * 300.00559 * 1 2 3 29 29 H 1.09008 * 109.47037 * 60.00635 * 1 2 3 30 30 H 1.07997 * 120.07772 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.90161 * 180.10385 * 5 4 3 32 32 H 1.07996 * 119.79451 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47043 * 300.00254 * 13 10 9 34 34 H 1.09008 * 109.47135 * 60.00003 * 13 10 9 35 35 H 1.08994 * 109.46928 * 300.00084 * 14 13 10 36 36 H 1.08996 * 109.46761 * 60.00454 * 14 13 10 37 37 H 1.09006 * 109.47407 * 299.99967 * 15 14 13 38 38 H 1.08999 * 109.47684 * 59.99863 * 15 14 13 39 39 H 0.97007 * 119.99787 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.79599 * 164.10379 * 24 9 8 41 41 H 1.08999 * 109.79682 * 284.90295 * 24 9 8 42 42 H 1.09001 * 109.57267 * 56.64741 * 25 24 9 43 43 H 1.09001 * 109.57498 * 177.02360 * 25 24 9 44 44 H 1.09000 * 109.27350 * 279.70087 * 26 7 6 45 45 H 1.08997 * 109.27157 * 39.20856 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2929 2.3734 -0.0006 5 6 1.9246 3.6036 -0.0012 6 6 3.3038 3.6762 -0.0027 7 6 4.0671 2.5193 -0.0032 8 6 3.4391 1.2856 0.0008 9 7 4.1857 0.0987 0.0064 10 16 3.4590 -1.3512 0.3412 11 8 2.5167 -1.5216 -0.7086 12 8 4.5422 -2.2559 0.5073 13 6 2.6100 -1.0780 1.9207 14 6 1.8922 -2.3616 2.3426 15 6 1.1755 -2.1309 3.6746 16 6 0.4690 -3.3954 4.0905 17 1 0.5251 -4.2754 3.4669 18 6 -0.2490 -3.4288 5.2670 19 7 -0.3178 -2.3571 6.0261 20 14 -1.1254 -4.9961 5.7821 21 1 -0.2111 -5.8263 6.6067 22 1 -2.3316 -4.6505 6.5763 23 1 -1.5301 -5.7572 4.5731 24 6 5.6233 0.1627 -0.2903 25 6 6.2118 1.3457 0.4896 26 6 5.5684 2.6378 -0.0130 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.2143 2.3188 -0.0007 31 1 1.3376 4.5101 0.0000 32 1 3.7904 4.6403 -0.0027 33 1 3.3395 -0.8029 2.6825 34 1 1.8820 -0.2745 1.8077 35 1 1.1628 -2.6371 1.5810 36 1 2.6204 -3.1646 2.4558 37 1 1.9046 -1.8551 4.4365 38 1 0.4473 -1.3279 3.5611 39 1 -0.8228 -2.3808 6.8541 40 1 6.1064 -0.7628 0.0227 41 1 5.7732 0.3141 -1.3593 42 1 6.0015 1.2235 1.5521 43 1 7.2894 1.3876 0.3312 44 1 5.9071 2.8352 -1.0300 45 1 5.8683 3.4632 0.6326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068897383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:52 Heat of formation + Delta-G solvation = -94.289561 kcal Electronic energy + Delta-G solvation = -29089.618418 eV Core-core repulsion = 25199.080050 eV Total energy + Delta-G solvation = -3890.538368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76062 -39.58363 -38.02931 -37.30765 -36.91954 -36.47075 -34.24332 -34.17648 -31.59238 -30.19032 -29.67224 -28.20713 -26.28239 -25.55967 -24.31477 -23.42047 -22.31809 -20.96619 -20.14460 -19.17895 -18.63954 -18.41997 -18.11529 -17.49818 -17.22473 -16.74295 -16.50185 -16.16358 -15.87239 -15.63120 -15.26689 -15.02534 -14.66241 -14.50714 -14.40355 -14.10622 -13.94399 -13.72921 -13.47549 -13.20957 -13.15629 -12.98136 -12.91760 -12.80395 -12.72376 -12.65265 -12.45903 -12.19268 -12.06486 -11.88128 -11.76504 -11.60130 -11.48073 -11.39350 -11.30432 -10.97944 -10.58768 -9.34441 -8.75007 -8.23196 -6.34692 -0.81299 0.36681 0.46097 1.39417 1.40265 1.50046 1.51772 2.23129 2.38875 2.63174 2.75710 3.10104 3.31181 3.39743 3.75692 3.83513 3.91839 3.99173 4.04861 4.12815 4.20893 4.34239 4.36210 4.37190 4.44577 4.50558 4.59545 4.62891 4.68360 4.77910 4.80802 4.88588 4.95788 5.02337 5.04972 5.14478 5.28260 5.32843 5.43097 5.53903 5.58032 5.60132 5.64505 5.77400 5.86691 6.17969 6.38620 6.80035 7.34658 8.88331 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.003704 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.746914 B = 7556.922386 C = 8201.054534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.326 6.326 3 C 0.033 3.967 4 C -0.180 4.180 5 C -0.106 4.106 6 C -0.123 4.123 7 C -0.086 4.086 8 C 0.126 3.874 9 N -0.936 5.936 10 S 2.620 3.380 11 O -0.944 6.944 12 O -0.994 6.994 13 C -0.601 4.601 14 C -0.094 4.094 15 C 0.038 3.962 16 C -0.551 4.551 17 H 0.060 0.940 18 C 0.005 3.995 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.264 1.264 24 C 0.093 3.907 25 C -0.131 4.131 26 C -0.073 4.073 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.126 0.874 34 H 0.147 0.853 35 H 0.068 0.932 36 H 0.060 0.940 37 H -0.003 1.003 38 H 0.003 0.997 39 H 0.265 0.735 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 16.333 -14.490 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.242 6.242 3 C -0.014 4.014 4 C -0.199 4.199 5 C -0.125 4.125 6 C -0.142 4.142 7 C -0.091 4.091 8 C 0.029 3.971 9 N -0.763 5.763 10 S 2.719 3.281 11 O -0.933 6.933 12 O -0.985 6.985 13 C -0.732 4.732 14 C -0.134 4.134 15 C 0.000 4.000 16 C -0.589 4.589 17 H 0.078 0.922 18 C -0.193 4.193 19 N -0.569 5.569 20 Si 0.787 3.213 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.030 4.030 25 C -0.170 4.170 26 C -0.110 4.110 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.164 0.836 31 H 0.172 0.828 32 H 0.177 0.823 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.015 0.985 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.133 0.867 44 H 0.115 0.885 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.230 15.309 -14.923 23.700 hybrid contribution -1.163 -0.557 1.105 1.698 sum 9.067 14.752 -13.818 22.153 Atomic orbital electron populations 1.23173 0.76868 1.04790 1.02230 1.86506 1.23905 1.25198 1.88583 1.19297 0.91169 0.87237 1.03738 1.21319 1.00902 0.91533 1.06189 1.21247 0.95145 0.97301 0.98817 1.21267 0.93563 0.98184 1.01145 1.19724 0.97723 0.89826 1.01791 1.16934 0.86682 0.87261 1.06195 1.55701 1.18566 1.21013 1.81011 1.04571 0.73425 0.72493 0.77631 1.93552 1.63850 1.83163 1.52749 1.93496 1.54503 1.62355 1.88132 1.30773 1.13368 1.08642 1.20389 1.21229 0.98887 0.93026 1.00212 1.18889 0.94163 0.96014 0.90930 1.21688 1.31755 0.98738 1.06680 0.92187 1.25916 0.97149 0.99842 0.96396 1.70082 1.42583 1.30321 1.13921 0.85480 0.78062 0.79193 0.78551 1.19826 1.20407 1.18807 1.22080 0.76959 1.02163 1.01792 1.21897 1.02019 0.93280 0.99787 1.20502 0.88017 0.98718 1.03772 0.88495 0.91798 0.90527 0.83578 0.82793 0.82292 0.85560 0.83483 0.91380 0.92178 0.98509 0.97817 0.92620 0.88355 0.89316 0.91742 0.86687 0.88512 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.64 113.37 1.09 1.72 16 2 O -0.33 -10.49 2.34 -69.20 -0.16 -10.65 16 3 C 0.03 0.94 5.59 22.61 0.13 1.06 16 4 C -0.18 -4.06 9.04 22.33 0.20 -3.86 16 5 C -0.11 -1.84 10.03 22.25 0.22 -1.62 16 6 C -0.12 -1.98 9.66 22.33 0.22 -1.77 16 7 C -0.09 -1.72 5.76 -19.76 -0.11 -1.83 16 8 C 0.13 3.38 6.12 38.14 0.23 3.61 16 9 N -0.94 -26.71 3.21 -337.24 -1.08 -27.80 16 10 S 2.62 92.73 4.80 -56.49 -0.27 92.46 16 11 O -0.94 -37.15 14.58 -117.91 -1.72 -38.87 16 12 O -0.99 -38.89 16.29 -127.65 -2.08 -40.97 16 13 C -0.60 -22.07 5.08 71.98 0.37 -21.70 16 14 C -0.09 -4.15 5.16 30.59 0.16 -3.99 16 15 C 0.04 2.05 4.97 29.85 0.15 2.20 16 16 C -0.55 -31.75 9.11 25.60 0.23 -31.51 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.01 0.30 5.46 84.65 0.46 0.77 16 19 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 20 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 24 C 0.09 2.03 6.45 86.44 0.56 2.59 16 25 C -0.13 -1.99 6.11 30.68 0.19 -1.80 16 26 C -0.07 -0.96 5.77 29.76 0.17 -0.79 16 27 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.06 1.58 7.66 -2.39 -0.02 1.56 16 29 H 0.08 1.65 7.66 -2.38 -0.02 1.63 16 30 H 0.15 2.78 6.30 -2.91 -0.02 2.76 16 31 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 32 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 33 H 0.13 4.33 8.14 -2.39 -0.02 4.31 16 34 H 0.15 5.23 4.92 -2.39 -0.01 5.21 16 35 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 38 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 40 H 0.10 2.28 6.65 -2.39 -0.02 2.27 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 43 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.11 0.92 8.12 -2.39 -0.02 0.90 16 Total: -1.00 -76.49 364.21 2.25 -74.24 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.98 Total: 17.88 kcal Atomic # 6 Polarization: -61.19 SS G_CDS: 4.26 Total: -56.92 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -0.80 Total: -83.57 kcal Atomic # 8 Polarization: -86.53 SS G_CDS: -3.96 Total: -90.49 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 92.73 SS G_CDS: -0.27 Total: 92.46 kcal Total: -76.49 2.25 -74.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068897383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.047 kcal (2) G-P(sol) polarization free energy of solvation -76.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds