Wall clock time and date at job start Tue Mar 31 2020 23:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46491 * 120.00110 * 2 1 4 4 C 1.50696 * 109.47293 * 269.99581 * 3 2 1 5 5 H 1.08007 * 119.99756 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00258 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99930 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99784 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47563 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47098 * 120.00376 * 8 6 4 11 11 H 1.48503 * 109.47177 * 239.99895 * 8 6 4 12 12 C 1.34785 * 119.99866 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00012 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99818 * 0.02562 * 12 2 1 15 15 S 1.81398 * 109.46835 * 179.97438 * 14 12 2 16 16 O 1.42096 * 108.57961 * 65.51308 * 15 14 12 17 17 O 1.42104 * 108.57866 * 294.48373 * 15 14 12 18 18 C 1.81408 * 101.91950 * 180.02562 * 15 14 12 19 19 C 1.52997 * 109.46973 * 180.02562 * 18 15 14 20 20 C 1.52995 * 109.47085 * 179.97438 * 19 18 15 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.08995 * 109.47150 * 270.00013 * 1 2 3 28 28 H 1.09000 * 109.46272 * 30.00566 * 1 2 3 29 29 H 1.09000 * 109.46555 * 150.00053 * 1 2 3 30 30 H 1.09001 * 109.47228 * 29.99622 * 3 2 1 31 31 H 1.09007 * 109.47231 * 149.99561 * 3 2 1 32 32 H 0.97003 * 119.99872 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47248 * 59.99450 * 14 12 2 34 34 H 1.08999 * 109.46970 * 299.99838 * 14 12 2 35 35 H 1.08992 * 109.47499 * 59.99992 * 18 15 14 36 36 H 1.08999 * 109.46513 * 299.99662 * 18 15 14 37 37 H 1.08995 * 109.47671 * 59.99598 * 19 18 15 38 38 H 1.09004 * 109.46984 * 299.99614 * 19 18 15 39 39 H 1.09005 * 109.47610 * 59.99944 * 20 19 18 40 40 H 1.09000 * 109.47256 * 299.99285 * 20 19 18 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1271 2.8773 -1.6727 7 7 3.5552 3.6169 -0.6731 8 14 3.4392 3.4160 -3.4339 9 1 2.8611 2.4162 -4.3673 10 1 2.8022 4.7370 -3.6677 11 1 4.9018 3.5237 -3.6669 12 6 2.1390 -1.1673 0.0005 13 8 3.3518 -1.1673 0.0010 14 6 1.3854 -2.4723 0.0005 15 16 2.5642 -3.8511 0.0005 16 8 3.2827 -3.8325 1.2263 17 8 3.2827 -3.8325 -1.2253 18 6 1.4585 -5.2893 -0.0003 19 6 2.2913 -6.5728 0.0003 20 6 1.3589 -7.7857 0.0003 21 6 2.1791 -9.0500 0.0002 22 6 2.5554 -9.6299 1.1973 23 6 3.3073 -10.7898 1.1972 24 6 3.6825 -11.3702 0.0001 25 6 3.3109 -10.7875 -1.1970 26 6 2.5550 -9.6300 -1.1970 27 1 -0.3633 0.0000 1.0276 28 1 -0.3632 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5138 31 1 3.1500 1.1383 0.5139 32 1 4.0321 4.4428 -0.8504 33 1 0.7590 -2.5302 -0.8896 34 1 0.7584 -2.5298 0.8903 35 1 0.8300 -5.2640 -0.8904 36 1 0.8295 -5.2644 0.8896 37 1 2.9196 -6.5980 0.8906 38 1 2.9207 -6.5979 -0.8893 39 1 0.7303 -7.7609 -0.8899 40 1 0.7298 -7.7605 0.8901 41 1 2.2618 -9.1767 2.1327 42 1 3.6016 -11.2426 2.1325 43 1 4.2697 -12.2767 0.0001 44 1 3.6077 -11.2385 -2.1324 45 1 2.2604 -9.1774 -2.1323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075905106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:35 Heat of formation + Delta-G solvation = -86.056659 kcal Electronic energy + Delta-G solvation = -26238.001172 eV Core-core repulsion = 22347.819810 eV Total energy + Delta-G solvation = -3890.181362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.64744 -39.15323 -36.81827 -35.93005 -35.57457 -35.03008 -32.72995 -31.65105 -31.20761 -30.49332 -27.64479 -27.10359 -25.82396 -23.22488 -22.90250 -22.66370 -21.20025 -19.11806 -18.54493 -17.38518 -16.91849 -16.69046 -16.42964 -16.27346 -15.85578 -15.72887 -15.35749 -15.02744 -14.91810 -14.49828 -14.11538 -13.98306 -13.71912 -13.47428 -13.14806 -12.83539 -12.68098 -12.62554 -12.31812 -12.25252 -12.07381 -11.97910 -11.86044 -11.80357 -11.48856 -11.36815 -11.31931 -11.09784 -10.94274 -10.89657 -10.64048 -10.45857 -10.20802 -9.68166 -9.37315 -9.24190 -9.02307 -8.46491 -7.82672 -6.07504 -4.12667 -0.09084 1.02063 1.08016 2.80660 3.06305 3.29585 3.37826 3.39978 3.42767 3.49900 3.91968 3.99089 4.21615 4.39383 4.42849 4.55675 4.64251 4.70207 4.70960 4.79705 4.82603 4.83949 5.02693 5.15660 5.17693 5.25902 5.26368 5.27710 5.30079 5.51690 5.55162 5.68238 5.74193 5.76620 5.78438 6.07628 6.14153 6.19904 6.29256 6.68252 6.86703 7.34167 7.39253 7.87399 8.15333 8.17749 8.68331 8.92680 9.52468 11.00855 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.002033 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.861056 B =13772.061272 C =14182.270558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.589 5.589 3 C 0.241 3.759 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.281 1.281 12 C 0.529 3.471 13 O -0.529 6.529 14 C -0.655 4.655 15 S 2.449 3.551 16 O -0.921 6.921 17 O -0.918 6.918 18 C -0.625 4.625 19 C -0.107 4.107 20 C -0.073 4.073 21 C -0.086 4.086 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.117 4.117 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.487 -27.292 2.978 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.320 5.320 3 C 0.123 3.877 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.207 1.207 12 C 0.313 3.687 13 O -0.407 6.407 14 C -0.784 4.784 15 S 2.627 3.373 16 O -0.918 6.918 17 O -0.915 6.915 18 C -0.752 4.752 19 C -0.145 4.145 20 C -0.111 4.111 21 C -0.086 4.086 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.135 4.135 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.860 -27.015 3.025 28.591 hybrid contribution -1.030 0.415 -0.971 1.474 sum -9.889 -26.600 2.055 28.453 Atomic orbital electron populations 1.21732 0.81048 1.02931 1.00783 1.48060 1.06463 1.07406 1.70068 1.19450 0.92804 0.77489 0.97990 1.21445 1.36902 1.06467 0.92096 0.92223 1.24948 0.95181 0.96341 0.97661 1.69940 1.38142 1.14337 1.30747 0.86405 0.78246 0.78217 0.84338 1.19727 1.20959 1.20716 1.18895 0.87334 0.83885 0.78606 1.90833 1.12869 1.86519 1.50514 1.30848 1.19358 1.15724 1.12450 1.07484 0.77064 0.76849 0.75947 1.93569 1.66960 1.85398 1.45858 1.93586 1.66886 1.85274 1.45712 1.30536 1.16213 1.16888 1.11600 1.21306 0.97697 0.90902 1.04641 1.20579 0.96629 0.90317 1.03574 1.19907 0.98806 0.96494 0.93372 1.21110 0.98643 0.96039 0.97683 1.21170 0.98283 0.96058 0.98171 1.21175 1.00311 1.00167 0.92674 1.21174 0.98237 0.96066 0.98183 1.21116 0.98579 0.96058 0.97706 0.93294 0.90255 0.92309 0.94462 0.93338 0.92655 0.82867 0.83029 0.84799 0.84843 0.89812 0.89786 0.90387 0.90398 0.85900 0.86036 0.86169 0.86026 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.24 59.85 0.61 1.77 16 2 N -0.59 -12.40 2.86 -182.95 -0.52 -12.93 16 3 C 0.24 6.34 5.16 -5.20 -0.03 6.32 16 4 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.53 11.10 7.69 -10.98 -0.08 11.02 16 13 O -0.53 -13.86 15.20 2.55 0.04 -13.83 16 14 C -0.66 -8.44 4.84 36.01 0.17 -8.27 16 15 S 2.45 34.24 3.96 -107.50 -0.43 33.81 16 16 O -0.92 -16.35 17.95 -59.54 -1.07 -17.42 16 17 O -0.92 -16.86 17.95 -59.52 -1.07 -17.93 16 18 C -0.62 -4.61 5.81 37.16 0.22 -4.40 16 19 C -0.11 -0.92 5.20 -26.74 -0.14 -1.05 16 20 C -0.07 -0.49 5.34 -27.88 -0.15 -0.64 16 21 C -0.09 -0.70 5.13 -104.62 -0.54 -1.24 16 22 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.13 -0.93 10.05 -39.58 -0.40 -1.32 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.06 0.64 6.44 -51.93 -0.33 0.31 16 30 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.05 1.44 7.42 -51.92 -0.39 1.05 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.15 1.39 7.40 -51.92 -0.38 1.01 16 34 H 0.15 1.27 8.11 -51.92 -0.42 0.85 16 35 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.13 0.59 8.14 -51.92 -0.42 0.16 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 40 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 41 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -40.79 394.68 -10.67 -51.46 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -6.98 Total: -3.40 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -2.32 Total: -16.86 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.21 Total: -38.85 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -2.10 Total: -49.17 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 34.24 SS G_CDS: -0.43 Total: 33.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -40.79 -10.67 -51.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075905106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.592 kcal (2) G-P(sol) polarization free energy of solvation -40.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds