Wall clock time and date at job start Tue Mar 31 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46491 * 120.00110 * 2 1 4 4 C 1.50696 * 109.47293 * 269.99581 * 3 2 1 5 5 H 1.08007 * 119.99756 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00258 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99930 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99784 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47563 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47098 * 120.00376 * 8 6 4 11 11 H 1.48503 * 109.47177 * 239.99895 * 8 6 4 12 12 C 1.34785 * 119.99866 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00012 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99818 * 0.02562 * 12 2 1 15 15 S 1.81398 * 109.46835 * 179.97438 * 14 12 2 16 16 O 1.42096 * 108.57961 * 65.51308 * 15 14 12 17 17 O 1.42104 * 108.57866 * 294.48373 * 15 14 12 18 18 C 1.81408 * 101.91950 * 180.02562 * 15 14 12 19 19 C 1.52997 * 109.46973 * 180.02562 * 18 15 14 20 20 C 1.52995 * 109.47085 * 179.97438 * 19 18 15 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.08995 * 109.47150 * 270.00013 * 1 2 3 28 28 H 1.09000 * 109.46272 * 30.00566 * 1 2 3 29 29 H 1.09000 * 109.46555 * 150.00053 * 1 2 3 30 30 H 1.09001 * 109.47228 * 29.99622 * 3 2 1 31 31 H 1.09007 * 109.47231 * 149.99561 * 3 2 1 32 32 H 0.97003 * 119.99872 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47248 * 59.99450 * 14 12 2 34 34 H 1.08999 * 109.46970 * 299.99838 * 14 12 2 35 35 H 1.08992 * 109.47499 * 59.99992 * 18 15 14 36 36 H 1.08999 * 109.46513 * 299.99662 * 18 15 14 37 37 H 1.08995 * 109.47671 * 59.99598 * 19 18 15 38 38 H 1.09004 * 109.46984 * 299.99614 * 19 18 15 39 39 H 1.09005 * 109.47610 * 59.99944 * 20 19 18 40 40 H 1.09000 * 109.47256 * 299.99285 * 20 19 18 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1271 2.8773 -1.6727 7 7 3.5552 3.6169 -0.6731 8 14 3.4392 3.4160 -3.4339 9 1 2.8611 2.4162 -4.3673 10 1 2.8022 4.7370 -3.6677 11 1 4.9018 3.5237 -3.6669 12 6 2.1390 -1.1673 0.0005 13 8 3.3518 -1.1673 0.0010 14 6 1.3854 -2.4723 0.0005 15 16 2.5642 -3.8511 0.0005 16 8 3.2827 -3.8325 1.2263 17 8 3.2827 -3.8325 -1.2253 18 6 1.4585 -5.2893 -0.0003 19 6 2.2913 -6.5728 0.0003 20 6 1.3589 -7.7857 0.0003 21 6 2.1791 -9.0500 0.0002 22 6 2.5554 -9.6299 1.1973 23 6 3.3073 -10.7898 1.1972 24 6 3.6825 -11.3702 0.0001 25 6 3.3109 -10.7875 -1.1970 26 6 2.5550 -9.6300 -1.1970 27 1 -0.3633 0.0000 1.0276 28 1 -0.3632 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5138 31 1 3.1500 1.1383 0.5139 32 1 4.0321 4.4428 -0.8504 33 1 0.7590 -2.5302 -0.8896 34 1 0.7584 -2.5298 0.8903 35 1 0.8300 -5.2640 -0.8904 36 1 0.8295 -5.2644 0.8896 37 1 2.9196 -6.5980 0.8906 38 1 2.9207 -6.5979 -0.8893 39 1 0.7303 -7.7609 -0.8899 40 1 0.7298 -7.7605 0.8901 41 1 2.2618 -9.1767 2.1327 42 1 3.6016 -11.2426 2.1325 43 1 4.2697 -12.2767 0.0001 44 1 3.6077 -11.2385 -2.1324 45 1 2.2604 -9.1774 -2.1323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075905106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:34 Heat of formation + Delta-G solvation = -116.361103 kcal Electronic energy + Delta-G solvation = -26239.315272 eV Core-core repulsion = 22347.819810 eV Total energy + Delta-G solvation = -3891.495462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.78748 -40.16032 -37.98322 -37.05011 -36.77873 -36.17466 -34.82323 -32.26723 -31.84337 -31.72985 -29.37509 -27.73008 -27.32283 -24.97566 -23.55985 -23.43322 -21.73840 -20.56557 -19.70541 -18.77659 -18.45341 -17.66630 -17.65293 -17.41142 -16.99652 -16.68219 -16.59787 -16.15607 -15.95606 -15.76120 -15.29368 -14.59571 -14.57881 -14.43130 -14.22251 -14.06511 -13.89367 -13.55019 -13.48574 -13.21568 -13.21230 -13.18515 -13.01520 -12.98214 -12.86373 -12.83080 -12.60938 -12.26592 -12.02070 -11.96755 -11.89066 -11.72432 -11.60407 -11.31112 -11.05274 -10.68515 -9.78866 -9.57186 -9.56092 -8.26988 -6.41832 -1.07833 0.47534 0.53274 1.33639 1.37618 1.48310 1.56397 1.84683 2.10046 2.36556 2.83188 2.94194 3.03319 3.08943 3.47202 3.55093 3.81745 3.98761 4.09366 4.11454 4.21429 4.23759 4.25179 4.34377 4.44721 4.46376 4.64924 4.70099 4.71026 4.71931 4.82275 4.89557 4.97784 5.02003 5.15120 5.16721 5.22859 5.27660 5.48157 5.61086 5.66462 5.73789 5.75465 5.99372 6.17029 6.50900 6.67993 7.13062 7.30872 8.80814 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.002033 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.861056 B =13772.061272 C =14182.270558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.597 5.597 3 C 0.252 3.748 4 C -0.547 4.547 5 H 0.056 0.944 6 C 0.005 3.995 7 N -0.927 5.927 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.265 1.265 11 H -0.284 1.284 12 C 0.507 3.493 13 O -0.601 6.601 14 C -0.638 4.638 15 S 2.416 3.584 16 O -0.981 6.981 17 O -0.984 6.984 18 C -0.572 4.572 19 C -0.121 4.121 20 C -0.066 4.066 21 C -0.100 4.100 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.132 4.132 26 C -0.132 4.132 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.033 0.967 31 H -0.003 1.003 32 H 0.268 0.732 33 H 0.203 0.797 34 H 0.208 0.792 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.503 -29.284 2.145 32.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.327 5.327 3 C 0.130 3.870 4 C -0.585 4.585 5 H 0.074 0.926 6 C -0.194 4.194 7 N -0.567 5.567 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.190 1.190 11 H -0.210 1.210 12 C 0.294 3.706 13 O -0.484 6.484 14 C -0.766 4.766 15 S 2.603 3.397 16 O -0.978 6.978 17 O -0.981 6.981 18 C -0.705 4.705 19 C -0.160 4.160 20 C -0.104 4.104 21 C -0.100 4.100 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.155 4.155 25 C -0.150 4.150 26 C -0.150 4.150 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.051 0.949 31 H 0.015 0.985 32 H 0.077 0.923 33 H 0.220 0.780 34 H 0.225 0.775 35 H 0.198 0.802 36 H 0.200 0.800 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.890 -28.969 2.198 31.784 hybrid contribution 0.168 0.916 -0.648 1.135 sum -12.722 -28.053 1.550 30.842 Atomic orbital electron populations 1.22168 0.76773 1.04992 1.03471 1.48088 1.09071 1.05798 1.69773 1.18901 0.91378 0.80265 0.96408 1.21741 1.37142 1.06659 0.92959 0.92556 1.25911 0.94803 0.96480 1.02233 1.70056 1.38745 1.14843 1.33041 0.85342 0.77876 0.78548 0.78896 1.18965 1.18979 1.20964 1.20194 0.87157 0.86331 0.76918 1.90801 1.16466 1.87956 1.53212 1.30739 1.18916 1.09524 1.17453 1.07971 0.78836 0.79125 0.73805 1.93495 1.70427 1.86750 1.47152 1.93506 1.70533 1.86733 1.47334 1.30149 1.13952 1.10047 1.16348 1.21449 0.98425 0.92410 1.03720 1.20594 0.96115 0.88128 1.05572 1.20176 0.99199 0.97253 0.93365 1.21399 0.98823 0.96337 0.98381 1.21467 0.98285 0.96270 0.98952 1.21465 1.00473 1.00842 0.92723 1.21463 0.98298 0.96292 0.98973 1.21395 0.98848 0.96399 0.98396 0.90221 0.91234 0.87307 0.94863 0.98467 0.92309 0.77991 0.77493 0.80239 0.79992 0.90960 0.91167 0.88451 0.88280 0.84661 0.84623 0.84670 0.84711 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.74 10.24 127.77 1.31 3.05 16 2 N -0.60 -25.00 2.86 -851.13 -2.43 -27.43 16 3 C 0.25 13.85 5.16 85.63 0.44 14.29 16 4 C -0.55 -32.15 9.39 25.60 0.24 -31.91 16 5 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 6 C 0.00 0.28 5.46 84.66 0.46 0.75 16 7 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 8 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 C 0.51 21.28 7.69 87.66 0.67 21.96 16 13 O -0.60 -33.53 15.20 -0.15 0.00 -33.54 16 14 C -0.64 -14.09 4.84 71.24 0.34 -13.75 16 15 S 2.42 65.11 3.96 -56.49 -0.22 64.88 16 16 O -0.98 -36.11 17.95 -125.74 -2.26 -38.37 16 17 O -0.98 -37.48 17.95 -125.76 -2.26 -39.74 16 18 C -0.57 -5.44 5.81 71.98 0.42 -5.02 16 19 C -0.12 -1.72 5.20 30.59 0.16 -1.56 16 20 C -0.07 -0.62 5.34 29.85 0.16 -0.46 16 21 C -0.10 -1.42 5.13 -19.86 -0.10 -1.53 16 22 C -0.13 -1.89 9.70 22.27 0.22 -1.67 16 23 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 24 C -0.14 -1.91 10.05 22.27 0.22 -1.69 16 25 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 26 C -0.13 -1.95 9.70 22.27 0.22 -1.73 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 29 H 0.11 1.72 6.44 -2.39 -0.02 1.70 16 30 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 31 H 0.00 -0.18 7.42 -2.38 -0.02 -0.20 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.20 2.39 7.40 -2.39 -0.02 2.38 16 34 H 0.21 2.16 8.11 -2.39 -0.02 2.14 16 35 H 0.18 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.18 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.10 0.57 8.09 -2.38 -0.02 0.55 16 40 H 0.10 0.55 8.09 -2.39 -0.02 0.53 16 41 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -102.12 394.68 1.32 -100.80 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 0.97 Total: 4.91 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 5.21 Total: -22.57 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.15 Total: -84.30 kcal Atomic # 8 Polarization: -107.12 SS G_CDS: -4.52 Total: -111.64 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 65.11 SS G_CDS: -0.22 Total: 64.88 kcal Total: -102.12 1.32 -100.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075905106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.557 kcal (2) G-P(sol) polarization free energy of solvation -102.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds