Wall clock time and date at job start Tue Mar 31 2020 23:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 110.99942 * 2 1 4 4 C 1.50701 * 109.47495 * 293.95410 * 3 2 1 5 5 H 1.08001 * 119.99702 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00191 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00143 * 359.97438 * 6 4 3 8 8 Si 1.86809 * 119.99900 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46736 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46985 * 119.99875 * 8 6 4 11 11 H 1.48499 * 109.46920 * 240.00207 * 8 6 4 12 12 C 1.46901 * 110.99923 * 123.95647 * 2 1 3 13 13 C 1.50696 * 109.47184 * 66.04429 * 12 2 1 14 14 N 1.30756 * 126.36216 * 270.13345 * 13 12 2 15 15 N 1.28431 * 110.64091 * 180.29601 * 14 13 12 16 16 N 1.28944 * 110.19609 * 359.74419 * 15 14 13 17 17 N 1.35043 * 126.36152 * 90.00238 * 13 12 2 18 18 C 1.40340 * 127.38673 * 359.97438 * 17 13 12 19 19 C 1.38825 * 120.01266 * 144.70441 * 18 17 13 20 20 C 1.38063 * 119.99153 * 180.02562 * 19 18 17 21 21 C 1.38748 * 120.00691 * 0.25904 * 20 19 18 22 22 O 1.35934 * 119.98688 * 179.73815 * 21 20 19 23 23 C 1.42906 * 116.99698 * 179.97438 * 22 21 20 24 24 F 1.39892 * 109.47377 * 300.00718 * 23 22 21 25 25 F 1.39901 * 109.46518 * 60.00964 * 23 22 21 26 26 C 1.38749 * 120.01884 * 359.48807 * 21 20 19 27 27 C 1.38055 * 120.00785 * 0.51232 * 26 21 20 28 28 H 1.08994 * 109.47583 * 296.04437 * 1 2 3 29 29 H 1.09008 * 109.47305 * 56.04813 * 1 2 3 30 30 H 1.09004 * 109.47600 * 176.04280 * 1 2 3 31 31 H 1.09000 * 109.47435 * 53.95257 * 3 2 1 32 32 H 1.09003 * 109.47114 * 173.94969 * 3 2 1 33 33 H 0.96998 * 120.00449 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46975 * 306.04493 * 12 2 1 35 35 H 1.09000 * 109.47200 * 186.04912 * 12 2 1 36 36 H 1.07999 * 120.00246 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.99152 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.46593 * 180.02562 * 23 22 21 39 39 H 1.08006 * 119.99491 * 180.25027 * 26 21 20 40 40 H 1.08002 * 120.00057 * 179.77139 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0276 3.3491 -1.5288 7 7 2.7128 4.0015 -0.6153 8 14 1.5838 4.1865 -3.1387 9 1 0.8166 3.2438 -3.9918 10 1 0.7569 5.3880 -2.8601 11 1 2.8258 4.5930 -3.8440 12 6 1.9954 -0.7660 1.1376 13 6 1.6369 -2.2204 0.9728 14 7 0.5529 -2.8061 1.4108 15 7 0.5589 -4.0542 1.1082 16 7 1.6326 -4.3495 0.4581 17 7 2.3742 -3.1605 0.3433 18 6 3.6169 -2.9886 -0.2857 19 6 4.5647 -4.0019 -0.2393 20 6 5.7873 -3.8322 -0.8577 21 6 6.0708 -2.6470 -1.5211 22 8 7.2767 -2.4782 -2.1253 23 6 7.5005 -1.2333 -2.7904 24 9 6.5472 -1.0662 -3.8004 25 9 7.3921 -0.1863 -1.8688 26 6 5.1219 -1.6360 -1.5722 27 6 3.8991 -1.8050 -0.9540 28 1 -0.3634 0.4512 0.9232 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 1.5610 1.9273 0.8309 32 1 3.0797 1.3444 0.1083 33 1 2.9874 4.9176 -0.7772 34 1 1.5610 -0.3873 2.0628 35 1 3.0797 -0.6611 1.1757 36 1 4.3457 -4.9228 0.2806 37 1 6.5248 -4.6203 -0.8212 38 1 8.4984 -1.2300 -3.2289 39 1 5.3414 -0.7152 -2.0922 40 1 3.1619 -1.0165 -0.9908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:09 Heat of formation + Delta-G solvation = 19.234737 kcal Electronic energy + Delta-G solvation = -29823.071017 eV Core-core repulsion = 25312.367453 eV Total energy + Delta-G solvation = -4510.703564 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.52889 -47.51614 -43.05066 -40.28676 -38.13456 -37.01401 -34.59260 -33.00468 -32.02237 -31.33545 -29.81583 -28.07657 -27.14246 -26.48588 -24.64373 -23.94688 -23.41928 -22.02116 -21.46810 -20.42905 -19.28699 -18.63059 -18.09608 -18.07669 -16.66130 -16.59374 -16.29323 -15.24735 -15.07572 -15.01516 -14.87846 -14.66279 -14.39027 -14.15945 -14.07643 -13.82838 -13.66809 -13.62350 -13.43413 -13.16362 -12.94253 -12.44780 -12.38791 -12.08312 -12.03336 -11.72473 -11.39277 -11.24124 -11.04051 -10.89137 -10.85841 -10.76876 -10.62018 -10.16826 -9.98718 -9.41370 -9.32484 -8.58338 -8.50298 -7.68773 -6.17010 -4.19356 0.43221 1.03471 1.42917 1.87058 2.23876 2.39791 3.23221 3.26778 3.31667 3.33364 3.36058 4.00402 4.02891 4.31890 4.38839 4.40907 4.55693 4.66647 4.69848 4.80587 5.08160 5.11213 5.20107 5.37413 5.46763 5.50278 5.62277 5.71256 5.75743 6.02402 6.03702 6.18025 6.19377 6.29636 6.44573 6.65608 6.79973 6.96363 7.09755 7.54695 7.75171 7.92000 8.25814 8.56919 8.87605 9.46000 10.93625 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007102 B = 0.005615 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3941.598655 B = 4985.828110 C = 8328.290099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.538 5.538 3 C 0.192 3.808 4 C -0.512 4.512 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.116 3.884 13 C 0.278 3.722 14 N -0.330 5.330 15 N -0.042 5.042 16 N -0.092 5.092 17 N -0.318 5.318 18 C 0.096 3.904 19 C -0.065 4.065 20 C -0.127 4.127 21 C 0.117 3.883 22 O -0.320 6.320 23 C 0.410 3.590 24 F -0.194 7.194 25 F -0.192 7.192 26 C -0.168 4.168 27 C -0.065 4.065 28 H 0.025 0.975 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.001 0.999 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.183 0.817 39 H 0.151 0.849 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.529 -12.209 -1.375 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.264 5.264 3 C 0.068 3.932 4 C -0.550 4.550 5 H 0.084 0.916 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.016 4.016 13 C 0.001 3.999 14 N -0.182 5.182 15 N -0.036 5.036 16 N -0.077 5.077 17 N -0.109 5.109 18 C 0.004 3.996 19 C -0.085 4.085 20 C -0.146 4.146 21 C 0.073 3.927 22 O -0.238 6.238 23 C 0.320 3.680 24 F -0.176 7.176 25 F -0.174 7.174 26 C -0.187 4.187 27 C -0.086 4.086 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.199 0.801 39 H 0.168 0.832 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.976 -13.479 -1.557 17.453 hybrid contribution 0.061 1.784 -0.435 1.837 sum 11.037 -11.696 -1.993 16.204 Atomic orbital electron populations 1.22311 0.87163 1.00472 1.01535 1.62204 1.08775 1.18613 1.36817 1.19853 0.95558 0.80147 0.97658 1.21096 1.35457 0.97072 1.01409 0.91636 1.24947 0.95053 0.97226 0.97005 1.69946 1.37907 1.11535 1.33946 0.86454 0.78253 0.79432 0.83409 1.19615 1.20986 1.20928 1.20825 1.01848 0.82167 0.96716 1.26008 0.87673 0.95891 0.90294 1.74500 1.18669 1.00377 1.24638 1.77974 1.11625 1.07104 1.06932 1.82568 1.01380 1.03957 1.19750 1.48754 1.16137 1.07701 1.38268 1.17485 0.82672 0.97593 1.01820 1.20772 0.91141 0.98326 0.98303 1.20209 0.97551 0.96309 1.00523 1.19038 0.84166 0.95216 0.94311 1.86617 1.33779 1.36575 1.66818 1.23384 0.93170 0.74591 0.76838 1.93133 1.68664 1.94879 1.60920 1.93155 1.96986 1.59311 1.67901 1.21573 0.93713 0.99877 1.03526 1.21755 0.98156 0.96772 0.91870 0.95666 0.90041 0.93239 0.98069 0.94748 0.92775 0.90469 0.88197 0.83861 0.83703 0.80091 0.83185 0.80383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.18 60.06 0.55 1.18 16 2 N -0.54 -10.39 3.09 -245.83 -0.76 -11.15 16 3 C 0.19 4.43 4.70 -4.98 -0.02 4.41 16 4 C -0.51 -13.15 8.46 -34.44 -0.29 -13.44 16 5 H 0.07 1.69 7.12 -52.49 -0.37 1.32 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 7 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.12 1.91 4.35 -4.98 -0.02 1.89 16 13 C 0.28 4.70 6.59 -155.20 -1.02 3.68 16 14 N -0.33 -5.96 11.44 32.75 0.37 -5.59 16 15 N -0.04 -0.75 13.39 60.35 0.81 0.05 16 16 N -0.09 -1.57 13.75 60.35 0.83 -0.74 16 17 N -0.32 -5.16 3.78 -7.95 -0.03 -5.19 16 18 C 0.10 1.39 6.35 -83.53 -0.53 0.86 16 19 C -0.07 -0.76 9.81 -39.43 -0.39 -1.15 16 20 C -0.13 -1.32 9.98 -39.46 -0.39 -1.71 16 21 C 0.12 1.38 6.48 -39.20 -0.25 1.13 16 22 O -0.32 -3.19 10.43 -19.53 -0.20 -3.40 16 23 C 0.41 3.48 5.98 101.05 0.60 4.09 16 24 F -0.19 -2.15 15.56 2.25 0.04 -2.11 16 25 F -0.19 -2.18 15.59 2.25 0.04 -2.14 16 26 C -0.17 -2.33 8.25 -39.46 -0.33 -2.65 16 27 C -0.07 -0.99 8.41 -39.43 -0.33 -1.32 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.63 6.76 -51.92 -0.35 1.28 16 30 H 0.05 0.91 6.74 -51.93 -0.35 0.56 16 31 H 0.00 0.04 8.12 -51.93 -0.42 -0.39 16 32 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 35 H 0.10 1.53 6.83 -51.93 -0.35 1.18 16 36 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.18 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.15 2.18 5.09 -52.48 -0.27 1.91 16 40 H 0.18 3.11 5.16 -52.49 -0.27 2.84 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -30.13 347.76 -4.53 -34.66 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.05 Total: 0.44 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.52 Total: -1.55 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 1.96 Total: -46.69 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: -0.20 Total: -3.40 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.07 Total: -4.25 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.13 -4.53 -34.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.892 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds