Wall clock time and date at job start Tue Mar 31 2020 23:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 110.99942 * 2 1 4 4 C 1.50701 * 109.47495 * 293.95410 * 3 2 1 5 5 H 1.08001 * 119.99702 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00191 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00143 * 359.97438 * 6 4 3 8 8 Si 1.86809 * 119.99900 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46736 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46985 * 119.99875 * 8 6 4 11 11 H 1.48499 * 109.46920 * 240.00207 * 8 6 4 12 12 C 1.46901 * 110.99923 * 123.95647 * 2 1 3 13 13 C 1.50696 * 109.47184 * 66.04429 * 12 2 1 14 14 N 1.30756 * 126.36216 * 270.13345 * 13 12 2 15 15 N 1.28431 * 110.64091 * 180.29601 * 14 13 12 16 16 N 1.28944 * 110.19609 * 359.74419 * 15 14 13 17 17 N 1.35043 * 126.36152 * 90.00238 * 13 12 2 18 18 C 1.40340 * 127.38673 * 359.97438 * 17 13 12 19 19 C 1.38825 * 120.01266 * 144.70441 * 18 17 13 20 20 C 1.38063 * 119.99153 * 180.02562 * 19 18 17 21 21 C 1.38748 * 120.00691 * 0.25904 * 20 19 18 22 22 O 1.35934 * 119.98688 * 179.73815 * 21 20 19 23 23 C 1.42906 * 116.99698 * 179.97438 * 22 21 20 24 24 F 1.39892 * 109.47377 * 300.00718 * 23 22 21 25 25 F 1.39901 * 109.46518 * 60.00964 * 23 22 21 26 26 C 1.38749 * 120.01884 * 359.48807 * 21 20 19 27 27 C 1.38055 * 120.00785 * 0.51232 * 26 21 20 28 28 H 1.08994 * 109.47583 * 296.04437 * 1 2 3 29 29 H 1.09008 * 109.47305 * 56.04813 * 1 2 3 30 30 H 1.09004 * 109.47600 * 176.04280 * 1 2 3 31 31 H 1.09000 * 109.47435 * 53.95257 * 3 2 1 32 32 H 1.09003 * 109.47114 * 173.94969 * 3 2 1 33 33 H 0.96998 * 120.00449 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46975 * 306.04493 * 12 2 1 35 35 H 1.09000 * 109.47200 * 186.04912 * 12 2 1 36 36 H 1.07999 * 120.00246 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.99152 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.46593 * 180.02562 * 23 22 21 39 39 H 1.08006 * 119.99491 * 180.25027 * 26 21 20 40 40 H 1.08002 * 120.00057 * 179.77139 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0276 3.3491 -1.5288 7 7 2.7128 4.0015 -0.6153 8 14 1.5838 4.1865 -3.1387 9 1 0.8166 3.2438 -3.9918 10 1 0.7569 5.3880 -2.8601 11 1 2.8258 4.5930 -3.8440 12 6 1.9954 -0.7660 1.1376 13 6 1.6369 -2.2204 0.9728 14 7 0.5529 -2.8061 1.4108 15 7 0.5589 -4.0542 1.1082 16 7 1.6326 -4.3495 0.4581 17 7 2.3742 -3.1605 0.3433 18 6 3.6169 -2.9886 -0.2857 19 6 4.5647 -4.0019 -0.2393 20 6 5.7873 -3.8322 -0.8577 21 6 6.0708 -2.6470 -1.5211 22 8 7.2767 -2.4782 -2.1253 23 6 7.5005 -1.2333 -2.7904 24 9 6.5472 -1.0662 -3.8004 25 9 7.3921 -0.1863 -1.8688 26 6 5.1219 -1.6360 -1.5722 27 6 3.8991 -1.8050 -0.9540 28 1 -0.3634 0.4512 0.9232 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 1.5610 1.9273 0.8309 32 1 3.0797 1.3444 0.1083 33 1 2.9874 4.9176 -0.7772 34 1 1.5610 -0.3873 2.0628 35 1 3.0797 -0.6611 1.1757 36 1 4.3457 -4.9228 0.2806 37 1 6.5248 -4.6203 -0.8212 38 1 8.4984 -1.2300 -3.2289 39 1 5.3414 -0.7152 -2.0922 40 1 3.1619 -1.0165 -0.9908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:09 Heat of formation + Delta-G solvation = 0.518572 kcal Electronic energy + Delta-G solvation = -29823.882611 eV Core-core repulsion = 25312.367453 eV Total energy + Delta-G solvation = -4511.515158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.30629 -48.31586 -44.38400 -41.23505 -39.14958 -38.53374 -35.80361 -34.85203 -33.55507 -32.35642 -30.89984 -29.71520 -28.78596 -27.34901 -26.22693 -25.19929 -24.57388 -23.14650 -22.98191 -21.89566 -20.14690 -19.66966 -19.00337 -18.87009 -18.55069 -17.94971 -17.27146 -16.85179 -16.44503 -16.31478 -16.07568 -15.77487 -15.73986 -15.39950 -15.00936 -14.88647 -14.69236 -14.64421 -14.54666 -14.37063 -14.11025 -13.94935 -13.72430 -13.55890 -13.32476 -13.02684 -12.94723 -12.75466 -12.67221 -12.40963 -12.31723 -12.18549 -12.01894 -11.88498 -11.50751 -11.31951 -10.61297 -10.32675 -9.53343 -9.31810 -8.20950 -6.28959 -0.74211 0.03969 0.24655 0.63259 1.01986 1.40509 1.43334 1.49803 1.54399 2.31368 2.39367 2.59620 2.67014 3.12796 3.17535 3.23149 3.44631 3.55054 3.62381 3.67988 3.75512 3.94017 4.11864 4.21544 4.22616 4.27377 4.31733 4.44341 4.53910 4.65530 4.82989 5.00968 5.02521 5.13698 5.15731 5.16816 5.21137 5.35969 5.61080 5.80616 5.94688 6.08017 6.38435 6.84376 7.21489 7.40104 8.89939 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007102 B = 0.005615 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3941.598655 B = 4985.828110 C = 8328.290099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.538 5.538 3 C 0.210 3.790 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.927 5.927 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.122 3.878 13 C 0.273 3.727 14 N -0.341 5.341 15 N -0.055 5.055 16 N -0.089 5.089 17 N -0.309 5.309 18 C 0.073 3.927 19 C -0.054 4.054 20 C -0.111 4.111 21 C 0.123 3.877 22 O -0.313 6.313 23 C 0.401 3.599 24 F -0.212 7.212 25 F -0.211 7.211 26 C -0.182 4.182 27 C -0.078 4.078 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.055 0.945 31 H -0.020 1.020 32 H 0.022 0.978 33 H 0.265 0.735 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.243 0.757 39 H 0.137 0.863 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.196 -13.694 -2.119 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.264 5.264 3 C 0.085 3.915 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.567 5.567 8 Si 0.783 3.217 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.205 1.205 12 C -0.009 4.009 13 C -0.003 4.003 14 N -0.194 5.194 15 N -0.050 5.050 16 N -0.074 5.074 17 N -0.100 5.100 18 C -0.018 4.018 19 C -0.073 4.073 20 C -0.129 4.129 21 C 0.078 3.922 22 O -0.230 6.230 23 C 0.313 3.687 24 F -0.193 7.193 25 F -0.193 7.193 26 C -0.201 4.201 27 C -0.098 4.098 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.074 0.926 31 H -0.003 1.003 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.180 0.820 37 H 0.201 0.799 38 H 0.259 0.741 39 H 0.155 0.845 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.645 -14.982 -2.308 19.740 hybrid contribution -0.341 2.180 -0.241 2.220 sum 12.304 -12.802 -2.550 17.938 Atomic orbital electron populations 1.22215 0.86849 1.00555 1.01101 1.62041 1.08975 1.16689 1.38707 1.19469 0.94586 0.81667 0.95793 1.21363 1.34961 0.97386 1.02166 0.92154 1.25691 0.95039 0.97941 0.99972 1.70042 1.39033 1.11911 1.35682 0.85510 0.78051 0.78359 0.79786 1.19257 1.20619 1.20451 1.20778 1.02419 0.81785 0.95897 1.25840 0.87842 0.95886 0.90775 1.74448 1.19230 1.00570 1.25120 1.77956 1.12157 1.07173 1.07704 1.82501 1.01179 1.04274 1.19454 1.48831 1.16458 1.07196 1.37486 1.17686 0.82673 0.98412 1.03055 1.21032 0.90757 0.97951 0.97606 1.20607 0.97514 0.96382 0.98433 1.19178 0.84284 0.94968 0.93763 1.86646 1.32469 1.37401 1.66462 1.24459 0.94941 0.73337 0.76010 1.93098 1.69800 1.94910 1.61535 1.93117 1.97123 1.60319 1.68768 1.21485 0.94097 1.00387 1.04119 1.21475 0.98287 0.96669 0.93412 0.95238 0.91442 0.92615 1.00253 0.95993 0.92637 0.89474 0.87215 0.81952 0.79878 0.74119 0.84498 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.18 127.69 1.17 2.75 16 2 N -0.54 -21.28 3.09 -931.67 -2.88 -24.17 16 3 C 0.21 10.00 4.70 85.56 0.40 10.40 16 4 C -0.52 -27.30 8.46 25.60 0.22 -27.08 16 5 H 0.06 3.17 7.12 -2.91 -0.02 3.15 16 6 C 0.01 0.68 5.46 84.65 0.46 1.14 16 7 N -0.93 -52.22 13.29 21.45 0.28 -51.94 16 8 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 C 0.12 4.08 4.35 85.56 0.37 4.45 16 13 C 0.27 9.19 6.59 138.05 0.91 10.10 16 14 N -0.34 -12.22 11.44 -50.30 -0.58 -12.79 16 15 N -0.06 -1.97 13.39 37.02 0.50 -1.48 16 16 N -0.09 -2.96 13.75 37.02 0.51 -2.45 16 17 N -0.31 -9.83 3.78 -179.06 -0.68 -10.50 16 18 C 0.07 2.04 6.35 38.06 0.24 2.28 16 19 C -0.05 -1.11 9.81 22.37 0.22 -0.89 16 20 C -0.11 -1.92 9.98 22.35 0.22 -1.70 16 21 C 0.12 2.65 6.48 22.51 0.15 2.79 16 22 O -0.31 -5.35 10.43 -92.81 -0.97 -6.32 16 23 C 0.40 5.95 5.98 113.37 0.68 6.63 16 24 F -0.21 -4.47 15.56 44.97 0.70 -3.77 16 25 F -0.21 -4.63 15.59 44.97 0.70 -3.93 16 26 C -0.18 -5.01 8.25 22.35 0.18 -4.82 16 27 C -0.08 -2.38 8.41 22.37 0.19 -2.19 16 28 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 2.75 6.76 -2.38 -0.02 2.74 16 30 H 0.06 2.06 6.74 -2.38 -0.02 2.04 16 31 H -0.02 -1.05 8.12 -2.39 -0.02 -1.07 16 32 H 0.02 1.10 7.93 -2.39 -0.02 1.08 16 33 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.09 2.74 8.12 -2.39 -0.02 2.72 16 35 H 0.11 3.43 6.83 -2.39 -0.02 3.41 16 36 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.24 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.14 4.09 5.09 -2.91 -0.01 4.08 16 40 H 0.15 5.49 5.16 -2.91 -0.02 5.47 16 Total: -1.00 -65.88 347.76 6.14 -59.74 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.11 Total: 9.23 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 5.42 Total: 3.85 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -2.85 Total: -103.33 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.97 Total: -6.32 kcal Atomic # 9 Polarization: -9.10 SS G_CDS: 1.40 Total: -7.69 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -65.88 6.14 -59.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.261 kcal (2) G-P(sol) polarization free energy of solvation -65.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds