Wall clock time and date at job start Tue Mar 31 2020 22:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47228 * 2 1 4 4 C 1.46499 * 119.99992 * 266.74947 * 3 2 1 5 5 C 1.50703 * 109.46897 * 264.23379 * 4 3 2 6 6 H 1.08002 * 119.99992 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00058 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00030 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99817 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47502 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46830 * 120.00646 * 9 7 5 12 12 H 1.48500 * 109.47132 * 240.00313 * 9 7 5 13 13 C 1.34772 * 120.00116 * 86.74639 * 3 2 1 14 14 O 1.21286 * 120.00202 * 5.34297 * 13 3 2 15 15 C 1.50697 * 120.00103 * 185.34595 * 13 3 2 16 16 H 1.09001 * 109.47487 * 318.92124 * 15 13 3 17 17 C 1.52997 * 109.47125 * 78.92293 * 15 13 3 18 18 C 1.50704 * 109.47036 * 198.92188 * 15 13 3 19 19 C 1.38233 * 119.99804 * 120.00273 * 18 15 13 20 20 C 1.38242 * 119.99999 * 180.02562 * 19 18 15 21 21 C 1.38229 * 119.99587 * 359.97438 * 20 19 18 22 22 S 1.76200 * 119.99902 * 179.97438 * 21 20 19 23 23 C 1.81401 * 104.44883 * 89.99984 * 22 21 20 24 24 O 1.42104 * 104.27452 * 333.93339 * 22 21 20 25 25 O 1.42094 * 104.28253 * 206.07335 * 22 21 20 26 26 C 1.38232 * 120.00700 * 0.25746 * 21 20 19 27 27 C 1.38231 * 120.00114 * 300.01749 * 18 15 13 28 28 H 1.09000 * 109.47416 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47394 * 300.00510 * 1 2 3 30 30 H 1.09005 * 109.46819 * 60.00525 * 1 2 3 31 31 H 1.09003 * 109.46708 * 239.99639 * 2 1 3 32 32 H 1.09003 * 109.46714 * 120.00004 * 2 1 3 33 33 H 1.09000 * 109.47152 * 24.22844 * 4 3 2 34 34 H 1.08997 * 109.47180 * 144.23857 * 4 3 2 35 35 H 0.97002 * 120.00058 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47532 * 304.88932 * 17 15 13 37 37 H 1.09000 * 109.47521 * 64.89807 * 17 15 13 38 38 H 1.09008 * 109.46924 * 184.89405 * 17 15 13 39 39 H 1.08000 * 120.00573 * 359.97438 * 19 18 15 40 40 H 1.07997 * 119.99680 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47154 * 300.00030 * 23 22 21 42 42 H 1.09004 * 109.47121 * 180.02562 * 23 22 21 43 43 H 1.08990 * 109.47249 * 60.00541 * 23 22 21 44 44 H 1.07998 * 120.00573 * 179.72611 * 26 21 20 45 45 H 1.08001 * 119.99952 * 0.02562 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3304 2.0478 -1.2667 5 6 3.8054 1.9237 -1.5495 6 1 4.4462 1.4003 -0.8554 7 6 4.3367 2.4776 -2.6950 8 7 3.5563 3.1145 -3.5405 9 14 6.1649 2.3232 -3.0459 10 1 6.8175 1.5656 -1.9481 11 1 6.3634 1.6034 -4.3297 12 1 6.7671 3.6774 -3.1395 13 6 2.1806 2.0386 1.1653 14 8 2.0157 1.4579 2.2172 15 6 2.5667 3.4952 1.1612 16 1 3.3194 3.6695 0.3924 17 6 1.3315 4.3494 0.8685 18 6 3.1287 3.8697 2.5084 19 6 4.4211 4.3496 2.6090 20 6 4.9369 4.6927 3.8449 21 6 4.1599 4.5562 4.9800 22 16 4.8174 4.9928 6.5554 23 6 4.3946 6.7458 6.7523 24 8 6.2214 4.8322 6.4058 25 8 4.0828 4.1964 7.4747 26 6 2.8691 4.0718 4.8801 27 6 2.3518 3.7330 3.6436 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7653 1.5794 -2.0726 34 1 2.0609 3.1017 -1.1986 35 1 3.9301 3.5045 -4.3462 36 1 0.8746 4.0199 -0.0646 37 1 0.6142 4.2419 1.6822 38 1 1.6258 5.3952 0.7795 39 1 5.0283 4.4559 1.7222 40 1 5.9467 5.0672 3.9235 41 1 4.8505 7.3221 5.9472 42 1 4.7681 7.1041 7.7116 43 1 3.3118 6.8647 6.7163 44 1 2.2636 3.9610 5.7675 45 1 1.3423 3.3574 3.5651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084633719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:53 Heat of formation + Delta-G solvation = -86.216064 kcal Electronic energy + Delta-G solvation = -27759.516381 eV Core-core repulsion = 23869.328106 eV Total energy + Delta-G solvation = -3890.188275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.05414 -38.55656 -37.18346 -36.02594 -35.29403 -34.09470 -32.80633 -30.92869 -30.68350 -29.81918 -29.21065 -27.07500 -24.78251 -23.23136 -23.06851 -22.72452 -21.10607 -19.08691 -18.31785 -17.73810 -16.87419 -16.41449 -16.32408 -15.92985 -15.82083 -14.96996 -14.88362 -14.47940 -14.40296 -14.18019 -13.68768 -13.55079 -13.44215 -13.38450 -13.12222 -12.79830 -12.64505 -12.45191 -12.29807 -12.17054 -12.05844 -11.79409 -11.69706 -11.53928 -11.38747 -11.28165 -11.17766 -11.00799 -10.84655 -10.78110 -10.56636 -10.49134 -10.13338 -9.79917 -9.19835 -8.90045 -8.80401 -8.62986 -7.79164 -6.27255 -4.35172 -0.05210 0.92885 1.48446 2.78281 3.15783 3.24855 3.26772 3.33125 3.48542 3.82700 3.98945 3.99291 4.27199 4.51540 4.66952 4.82557 4.90825 5.00491 5.05787 5.22169 5.35758 5.43513 5.53037 5.56151 5.59468 5.65199 5.75834 5.81959 5.90601 5.95651 6.05552 6.19727 6.20187 6.25941 6.27006 6.33357 6.41338 6.57360 6.70447 6.77219 6.99034 7.10762 7.47115 7.68778 7.97169 8.24864 8.71085 8.93342 9.33750 10.79060 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012632 B = 0.003370 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.085020 B = 8305.500828 C = 9642.352126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.593 5.593 4 C 0.233 3.767 5 C -0.541 4.541 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.281 1.281 13 C 0.526 3.474 14 O -0.568 6.568 15 C -0.086 4.086 16 H 0.126 0.874 17 C -0.134 4.134 18 C -0.001 4.001 19 C -0.131 4.131 20 C -0.030 4.030 21 C -0.666 4.666 22 S 2.503 3.497 23 C -0.651 4.651 24 O -0.942 6.942 25 O -0.941 6.941 26 C -0.032 4.032 27 C -0.101 4.101 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 8.014 13.056 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.323 5.323 4 C 0.113 3.887 5 C -0.580 4.580 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.207 1.207 13 C 0.314 3.686 14 O -0.448 6.448 15 C -0.107 4.107 16 H 0.144 0.856 17 C -0.191 4.191 18 C -0.002 4.002 19 C -0.150 4.150 20 C -0.049 4.049 21 C -0.754 4.754 22 S 2.684 3.316 23 C -0.801 4.801 24 O -0.939 6.939 25 O -0.939 6.939 26 C -0.051 4.051 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.834 7.262 13.949 15.980 hybrid contribution 0.622 0.306 -1.297 1.471 sum -2.212 7.569 12.653 14.909 Atomic orbital electron populations 1.22114 0.96832 1.01305 1.01849 1.21250 0.93334 0.83821 1.02517 1.48198 1.62923 1.13234 1.07974 1.19543 0.96266 0.93479 0.79431 1.21562 0.93276 1.36355 1.06803 0.92033 1.24930 0.98335 0.94718 0.95664 1.69923 1.35351 1.35719 1.11745 0.86496 0.84828 0.78076 0.78485 1.19576 1.20769 1.20702 1.20073 0.76670 0.88314 0.83579 1.90611 1.53582 1.69280 1.31363 1.20476 1.00967 0.93595 0.95674 0.85631 1.21728 0.95654 0.99325 1.02429 1.19940 0.93387 0.92127 0.94742 1.21291 0.95264 1.00338 0.98123 1.20817 0.98319 0.94568 0.91234 1.30266 1.05684 1.19271 1.20209 1.04964 0.74738 0.77398 0.74545 1.30235 1.12872 1.25345 1.11601 1.93576 1.29148 1.85211 1.85945 1.93573 1.73515 1.65142 1.61643 1.20845 0.92782 0.93123 0.98391 1.21147 1.00988 0.98315 0.91562 0.92379 0.92864 0.92613 0.90484 0.91157 0.94510 0.94017 0.92493 0.90828 0.92532 0.91585 0.84685 0.84405 0.85010 0.85353 0.85043 0.84552 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.22 37.16 0.38 -2.09 16 2 C 0.11 2.05 6.11 -4.04 -0.02 2.03 16 3 N -0.59 -11.99 2.48 -175.06 -0.43 -12.42 16 4 C 0.23 5.20 4.76 -5.19 -0.02 5.18 16 5 C -0.54 -13.51 8.64 -34.44 -0.30 -13.81 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -23.41 13.29 55.43 0.74 -22.67 16 9 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 13 C 0.53 10.52 6.73 -10.99 -0.07 10.45 16 14 O -0.57 -12.31 14.21 5.55 0.08 -12.23 16 15 C -0.09 -1.50 2.06 -92.92 -0.19 -1.69 16 16 H 0.13 2.39 6.29 -51.93 -0.33 2.06 16 17 C -0.13 -1.96 8.76 37.16 0.33 -1.64 16 18 C 0.00 -0.02 4.59 -104.62 -0.48 -0.50 16 19 C -0.13 -1.97 9.67 -39.58 -0.38 -2.36 16 20 C -0.03 -0.41 9.47 -39.58 -0.37 -0.78 16 21 C -0.67 -8.43 5.66 -39.59 -0.22 -8.65 16 22 S 2.50 25.69 5.80 -107.50 -0.62 25.07 16 23 C -0.65 -3.55 10.80 101.05 1.09 -2.46 16 24 O -0.94 -12.67 17.13 -57.54 -0.99 -13.65 16 25 O -0.94 -12.62 17.12 -57.54 -0.98 -13.60 16 26 C -0.03 -0.44 9.47 -39.58 -0.37 -0.81 16 27 C -0.10 -1.55 7.80 -39.58 -0.31 -1.86 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 32 H 0.07 1.30 7.45 -51.93 -0.39 0.91 16 33 H 0.04 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.04 0.94 5.13 -51.93 -0.27 0.67 16 35 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.07 1.14 6.61 -51.93 -0.34 0.79 16 37 H 0.06 0.75 7.23 -51.93 -0.38 0.38 16 38 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.14 1.90 7.95 -52.49 -0.42 1.49 16 40 H 0.14 1.53 7.57 -52.49 -0.40 1.13 16 41 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.14 1.54 7.56 -52.49 -0.40 1.14 16 45 H 0.13 2.00 7.01 -52.49 -0.37 1.63 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -33.45 383.08 -9.14 -42.58 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.62 Total: 3.61 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.06 Total: -17.39 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.30 Total: -35.10 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.89 Total: -39.48 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 25.69 SS G_CDS: -0.62 Total: 25.07 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.45 -9.14 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084633719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.635 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds