Wall clock time and date at job start Tue Mar 31 2020 22:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47169 * 2 1 4 4 C 1.46504 * 119.99721 * 268.99239 * 3 2 1 5 5 C 1.50705 * 109.47273 * 273.59315 * 4 3 2 6 6 H 1.08002 * 119.99844 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00143 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00332 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99896 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47250 * 89.99951 * 9 7 5 11 11 H 1.48504 * 109.47268 * 210.00018 * 9 7 5 12 12 H 1.48500 * 109.47444 * 330.00278 * 9 7 5 13 13 C 1.34772 * 120.00287 * 88.99624 * 3 2 1 14 14 O 1.21283 * 120.00037 * 5.03656 * 13 3 2 15 15 C 1.50703 * 120.00120 * 185.04302 * 13 3 2 16 16 H 1.08999 * 109.46955 * 33.49680 * 15 13 3 17 17 C 1.52995 * 109.47058 * 273.49402 * 15 13 3 18 18 C 1.50703 * 109.47195 * 153.49211 * 15 13 3 19 19 C 1.38236 * 120.00092 * 240.00297 * 18 15 13 20 20 C 1.38238 * 119.99861 * 180.02562 * 19 18 15 21 21 C 1.38232 * 120.00098 * 359.97438 * 20 19 18 22 22 S 1.76198 * 120.00101 * 179.97438 * 21 20 19 23 23 C 1.81404 * 104.44505 * 90.00660 * 22 21 20 24 24 O 1.42101 * 104.27577 * 333.93911 * 22 21 20 25 25 O 1.42100 * 104.27885 * 206.07746 * 22 21 20 26 26 C 1.38239 * 119.99838 * 0.26377 * 21 20 19 27 27 C 1.38230 * 119.99837 * 359.46765 * 26 21 20 28 28 H 1.09000 * 109.47276 * 63.99826 * 1 2 3 29 29 H 1.09002 * 109.47221 * 183.99398 * 1 2 3 30 30 H 1.09000 * 109.47705 * 303.99529 * 1 2 3 31 31 H 1.08996 * 109.47568 * 239.99670 * 2 1 3 32 32 H 1.09007 * 109.47226 * 119.99667 * 2 1 3 33 33 H 1.08994 * 109.47079 * 33.59291 * 4 3 2 34 34 H 1.09001 * 109.46923 * 153.59442 * 4 3 2 35 35 H 0.96997 * 120.00488 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46844 * 305.31788 * 17 15 13 37 37 H 1.08999 * 109.47157 * 65.31760 * 17 15 13 38 38 H 1.09003 * 109.47308 * 185.32150 * 17 15 13 39 39 H 1.08004 * 120.00069 * 359.97103 * 19 18 15 40 40 H 1.07994 * 119.99511 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47235 * 299.99674 * 23 22 21 42 42 H 1.08997 * 109.47077 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47180 * 60.00105 * 23 22 21 44 44 H 1.07999 * 119.99734 * 179.71859 * 26 21 20 45 45 H 1.08000 * 119.99889 * 180.27398 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2835 2.0643 -1.2686 5 6 3.6862 1.7530 -1.7232 6 1 4.3172 1.1108 -1.1266 7 6 4.1643 2.2887 -2.9002 8 7 5.3882 2.0166 -3.2972 9 14 3.0732 3.3999 -3.9317 10 1 3.2581 4.8101 -3.5046 11 1 3.4414 3.2642 -5.3639 12 1 1.6526 3.0090 -3.7467 13 6 2.2236 2.0234 1.1669 14 8 2.0923 1.4304 2.2167 15 6 2.6163 3.4783 1.1674 16 1 2.1418 3.9830 0.3259 17 6 4.1365 3.5963 1.0415 18 6 2.1677 4.1194 2.4554 19 6 1.2831 5.1813 2.4275 20 6 0.8719 5.7696 3.6089 21 6 1.3449 5.2957 4.8183 22 16 0.8214 6.0460 6.3241 23 6 -0.6629 5.1180 6.7999 24 8 0.4812 7.3750 5.9536 25 8 1.8834 5.7875 7.2322 26 6 2.2334 4.2369 4.8459 27 6 2.6402 3.6451 3.6648 28 1 -0.3634 0.4505 -0.9236 29 1 -0.3634 -1.0252 0.0716 30 1 -0.3634 0.5746 0.8520 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5732 1.7218 -2.0211 34 1 2.1765 3.1403 -1.1311 35 1 5.7248 2.3938 -4.1250 36 1 4.6127 3.0127 1.8295 37 1 4.4510 3.2181 0.0688 38 1 4.4290 4.6420 1.1367 39 1 0.9138 5.5518 1.4826 40 1 0.1812 6.5994 3.5870 41 1 -1.4153 5.2096 6.0166 42 1 -1.0592 5.5198 7.7324 43 1 -0.4065 4.0675 6.9364 44 1 2.6064 3.8696 5.7905 45 1 3.3308 2.8151 3.6866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084633721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:56 Heat of formation + Delta-G solvation = -102.058507 kcal Electronic energy + Delta-G solvation = -27736.937912 eV Core-core repulsion = 23846.062657 eV Total energy + Delta-G solvation = -3890.875255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49872 -39.88006 -38.10246 -37.02621 -36.93879 -35.43786 -34.60076 -32.22550 -32.02580 -30.66642 -30.13016 -29.47858 -26.09625 -24.55021 -24.44950 -23.82883 -22.39353 -19.99283 -19.78905 -19.02502 -18.71285 -18.20144 -17.48909 -17.09968 -16.90636 -16.39901 -16.19374 -15.78942 -15.73342 -15.46090 -14.97865 -14.72129 -14.47107 -14.33154 -14.23597 -14.12299 -13.91897 -13.84330 -13.46211 -13.39704 -13.25378 -13.14252 -13.11190 -13.00348 -12.80225 -12.62708 -12.48042 -12.35687 -12.07772 -12.02615 -11.97770 -11.84411 -11.65287 -11.53246 -10.78528 -10.63750 -10.10548 -9.95250 -9.45877 -8.28069 -6.34434 -0.81905 -0.17935 0.36831 1.41163 1.43211 1.51695 1.66640 1.94905 2.17629 2.35574 2.54167 3.05661 3.07562 3.22974 3.55604 3.59858 3.80263 3.98004 4.06886 4.13960 4.18784 4.24084 4.27166 4.37424 4.41251 4.51406 4.54813 4.68346 4.77144 4.78225 4.82573 4.91042 4.92591 4.99068 5.00309 5.04194 5.10777 5.15194 5.27552 5.37831 5.45742 5.55440 5.70618 5.87802 6.18745 6.59819 6.70920 7.21469 7.33216 8.87849 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.002983 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.137536 B = 9385.382452 C =10002.427066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.107 3.893 3 N -0.594 5.594 4 C 0.213 3.787 5 C -0.532 4.532 6 H 0.031 0.969 7 C 0.022 3.978 8 N -0.942 5.942 9 Si 0.934 3.066 10 H -0.260 1.260 11 H -0.289 1.289 12 H -0.237 1.237 13 C 0.521 3.479 14 O -0.580 6.580 15 C -0.073 4.073 16 H 0.115 0.885 17 C -0.138 4.138 18 C -0.029 4.029 19 C -0.139 4.139 20 C -0.032 4.032 21 C -0.665 4.665 22 S 2.515 3.485 23 C -0.626 4.626 24 O -0.972 6.972 25 O -0.978 6.978 26 C -0.038 4.038 27 C -0.117 4.117 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.267 0.733 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.932 6.425 14.079 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 N -0.323 5.323 4 C 0.091 3.909 5 C -0.570 4.570 6 H 0.049 0.951 7 C -0.177 4.177 8 N -0.581 5.581 9 Si 0.757 3.243 10 H -0.184 1.184 11 H -0.215 1.215 12 H -0.160 1.160 13 C 0.309 3.691 14 O -0.462 6.462 15 C -0.093 4.093 16 H 0.133 0.867 17 C -0.195 4.195 18 C -0.029 4.029 19 C -0.158 4.158 20 C -0.050 4.050 21 C -0.750 4.750 22 S 2.698 3.302 23 C -0.780 4.780 24 O -0.969 6.969 25 O -0.975 6.975 26 C -0.057 4.057 27 C -0.136 4.136 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.170 0.830 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.174 0.826 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.452 6.810 14.845 22.484 hybrid contribution 0.444 -0.720 -1.520 1.740 sum -15.008 6.090 13.325 20.973 Atomic orbital electron populations 1.22006 0.94054 1.03055 1.01709 1.21413 0.95428 0.82431 1.02247 1.48006 1.63385 1.14323 1.06618 1.19746 0.95295 0.93918 0.81958 1.21404 0.98242 1.30497 1.06902 0.95101 1.25734 0.96046 0.97579 0.98389 1.70047 1.18102 1.46113 1.23848 0.85915 0.80740 0.79875 0.77795 1.18423 1.21546 1.15960 1.20553 0.75903 0.89452 0.83164 1.90579 1.54528 1.69176 1.31921 1.20361 0.99329 0.92538 0.97120 0.86731 1.21757 0.91457 1.02875 1.03458 1.19940 0.94590 0.94546 0.93837 1.21461 0.97922 0.96176 1.00194 1.21165 0.96343 0.97007 0.90501 1.30717 1.12813 1.11816 1.19678 1.04643 0.77469 0.74930 0.73174 1.30037 1.17845 1.15840 1.14236 1.93531 1.85608 1.34831 1.82957 1.93531 1.54370 1.86295 1.63340 1.21061 0.93120 0.92321 0.99211 1.21195 1.00725 0.99328 0.92383 0.92006 0.89706 0.93613 0.90623 0.91877 0.93657 0.93117 0.92348 0.93361 0.90854 0.90347 0.82976 0.81732 0.82824 0.82586 0.83406 0.83178 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 10.23 71.98 0.74 -3.28 16 2 C 0.11 3.67 6.17 86.38 0.53 4.20 16 3 N -0.59 -22.76 2.46 -826.16 -2.03 -24.79 16 4 C 0.21 8.55 4.00 85.63 0.34 8.89 16 5 C -0.53 -26.81 8.03 25.60 0.21 -26.61 16 6 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 7 C 0.02 1.12 5.47 84.65 0.46 1.58 16 8 N -0.94 -54.20 13.96 21.45 0.30 -53.90 16 9 Si 0.93 37.88 27.47 68.60 1.88 39.76 16 10 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 11 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.24 -8.48 6.54 99.48 0.65 -7.83 16 13 C 0.52 19.90 6.75 87.66 0.59 20.50 16 14 O -0.58 -24.09 14.12 -3.04 -0.04 -24.13 16 15 C -0.07 -2.40 2.16 -12.29 -0.03 -2.43 16 16 H 0.11 3.45 5.86 -2.39 -0.01 3.44 16 17 C -0.14 -4.87 8.87 71.98 0.64 -4.23 16 18 C -0.03 -0.85 4.66 -19.87 -0.09 -0.94 16 19 C -0.14 -3.35 9.67 22.27 0.22 -3.14 16 20 C -0.03 -0.67 9.47 22.27 0.21 -0.46 16 21 C -0.66 -14.34 5.66 22.27 0.13 -14.21 16 22 S 2.52 42.03 5.80 -56.49 -0.33 41.70 16 23 C -0.63 -3.92 10.80 113.37 1.22 -2.70 16 24 O -0.97 -21.80 17.13 -127.65 -2.19 -23.99 16 25 O -0.98 -23.52 17.12 -127.65 -2.19 -25.70 16 26 C -0.04 -0.97 9.47 22.27 0.21 -0.76 16 27 C -0.12 -3.56 7.96 22.27 0.18 -3.38 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 2.63 8.06 -2.39 -0.02 2.61 16 32 H 0.06 2.27 7.39 -2.38 -0.02 2.25 16 33 H 0.05 1.74 7.16 -2.39 -0.02 1.73 16 34 H 0.05 1.88 5.09 -2.39 -0.01 1.87 16 35 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.05 1.72 7.58 -2.39 -0.02 1.71 16 37 H 0.07 3.08 5.93 -2.39 -0.01 3.06 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.15 2.90 7.95 -2.91 -0.02 2.88 16 40 H 0.17 2.54 7.57 -2.91 -0.02 2.52 16 41 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.15 3.26 7.56 -2.91 -0.02 3.24 16 45 H 0.12 3.93 6.92 -2.91 -0.02 3.91 16 Total: -1.00 -75.30 378.60 1.90 -73.40 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.93 Total: 24.61 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 5.56 Total: -26.96 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.73 Total: -78.68 kcal Atomic # 8 Polarization: -69.40 SS G_CDS: -4.41 Total: -73.82 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 1.88 Total: 39.76 kcal Atomic # 16 Polarization: 42.03 SS G_CDS: -0.33 Total: 41.70 kcal Total: -75.30 1.90 -73.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084633721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.663 kcal (2) G-P(sol) polarization free energy of solvation -75.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds