Wall clock time and date at job start Tue Mar 31 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 C 1.76202 * 107.22092 * 90.00378 * 14 12 2 18 18 C 1.38284 * 120.11488 * 269.72553 * 17 14 12 19 19 C 1.37933 * 120.34952 * 179.59539 * 18 17 14 20 20 C 1.39289 * 120.23982 * 0.51635 * 19 18 17 21 21 C 1.38874 * 118.87300 * 0.06894 * 20 19 18 22 22 C 1.37742 * 120.79186 * 359.50440 * 21 20 19 23 23 C 1.51649 * 107.03703 * 179.05151 * 21 20 19 24 24 C 1.54705 * 101.92884 * 344.66380 * 23 21 20 25 25 C 1.53010 * 110.74847 * 266.95412 * 24 23 21 26 26 C 1.52999 * 110.90547 * 143.67486 * 24 23 21 27 27 O 1.36131 * 129.88954 * 180.31112 * 20 19 18 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 33 33 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 34 34 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 35 35 H 1.08000 * 119.82734 * 359.85217 * 18 17 14 36 36 H 1.08005 * 119.87990 * 180.28096 * 19 18 17 37 37 H 1.07997 * 120.01764 * 180.36840 * 22 21 20 38 38 H 1.09001 * 110.93971 * 102.82161 * 23 21 20 39 39 H 1.09000 * 110.93627 * 226.50434 * 23 21 20 40 40 H 1.08999 * 109.46592 * 174.81872 * 25 24 23 41 41 H 1.09002 * 109.46955 * 294.81512 * 25 24 23 42 42 H 1.08997 * 109.47119 * 54.81675 * 25 24 23 43 43 H 1.08992 * 109.47497 * 305.09138 * 26 24 23 44 44 H 1.08999 * 109.47356 * 65.09661 * 26 24 23 45 45 H 1.09005 * 109.46932 * 185.08762 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 6 4.6445 -0.1183 -1.7881 18 6 5.2421 0.7801 -0.9232 19 6 6.5497 0.5983 -0.5236 20 6 7.2834 -0.4871 -0.9967 21 6 6.6760 -1.3757 -1.8743 22 6 5.3674 -1.1971 -2.2653 23 6 7.7109 -2.4253 -2.2309 24 6 9.0222 -1.7557 -1.7560 25 6 9.6827 -0.9849 -2.9009 26 6 9.9861 -2.7930 -1.1766 27 8 8.5669 -0.8554 -0.7318 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1609 3.4844 32 1 0.7375 -2.1444 -1.9993 33 1 2.4628 -2.5819 -1.9863 34 1 1.5295 -2.5969 -0.4708 35 1 4.6808 1.6263 -0.5555 36 1 7.0075 1.3022 0.1557 37 1 4.9056 -1.8991 -2.9437 38 1 7.5282 -3.3526 -1.6879 39 1 7.7312 -2.6027 -3.3061 40 1 10.5524 -0.4475 -2.5228 41 1 9.9964 -1.6840 -3.6761 42 1 8.9700 -0.2743 -3.3192 43 1 9.4864 -3.3512 -0.3850 44 1 10.2977 -3.4793 -1.9640 45 1 10.8612 -2.2875 -0.7680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084674337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:37 Heat of formation + Delta-G solvation = -79.917678 kcal Electronic energy + Delta-G solvation = -28503.038710 eV Core-core repulsion = 24613.123553 eV Total energy + Delta-G solvation = -3889.915156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47154 -37.68990 -36.69700 -36.15114 -35.24704 -34.08292 -32.60640 -31.66902 -30.25921 -29.08124 -27.81223 -26.75501 -25.51256 -25.17636 -22.94790 -21.93496 -20.91316 -20.67941 -18.40715 -17.34011 -17.19549 -16.70818 -16.42531 -16.25364 -15.80677 -15.21423 -14.62462 -14.40509 -14.23064 -14.00116 -13.48747 -13.41857 -13.28706 -13.01217 -12.88085 -12.77893 -12.66439 -12.48305 -12.33463 -12.05249 -11.95604 -11.78954 -11.53736 -11.38144 -11.34461 -11.20640 -11.06513 -10.96279 -10.86815 -10.80945 -10.54264 -10.43474 -10.20286 -10.04581 -9.28098 -8.87858 -8.48200 -8.41214 -7.94818 -6.09787 -4.18116 0.88862 1.17964 1.37219 2.96754 3.26041 3.31578 3.33370 3.43730 3.79409 4.17259 4.22791 4.35893 4.37736 4.48196 4.66487 4.80354 4.96243 5.08520 5.17696 5.20895 5.26792 5.32740 5.39457 5.42977 5.47918 5.60505 5.63585 5.69295 5.73034 5.85538 5.98852 6.10287 6.17431 6.28011 6.29544 6.33818 6.60235 6.66683 6.87041 6.89322 7.10996 7.11455 7.45350 7.61812 7.77505 8.04281 8.25100 8.84782 9.48357 10.95144 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.004394 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.341734 B = 6370.734931 C = 7754.977044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.266 3.734 3 H 0.061 0.939 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.980 5.980 13 C 0.105 3.895 14 S 2.690 3.310 15 O -0.978 6.978 16 O -0.960 6.960 17 C -0.694 4.694 18 C 0.030 3.970 19 C -0.159 4.159 20 C 0.154 3.846 21 C -0.202 4.202 22 C 0.027 3.973 23 C -0.098 4.098 24 C 0.098 3.902 25 C -0.163 4.163 26 C -0.141 4.141 27 O -0.295 6.295 28 H 0.014 0.986 29 H 0.093 0.907 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.197 -6.220 -8.891 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.079 0.921 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.820 5.820 13 C -0.041 4.041 14 S 2.780 3.220 15 O -0.968 6.968 16 O -0.950 6.950 17 C -0.779 4.779 18 C 0.011 3.989 19 C -0.178 4.178 20 C 0.108 3.892 21 C -0.204 4.204 22 C 0.008 3.992 23 C -0.135 4.135 24 C 0.061 3.939 25 C -0.220 4.220 26 C -0.198 4.198 27 O -0.208 6.208 28 H 0.033 0.967 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.014 -5.577 -9.284 17.711 hybrid contribution 0.907 -0.867 1.429 1.901 sum 14.920 -6.445 -7.856 18.052 Atomic orbital electron populations 1.22056 0.97701 0.99771 1.00875 1.18787 0.91997 0.92829 0.80018 0.92127 1.21352 1.31937 1.13227 0.90181 0.91960 1.24886 0.94896 0.94943 0.98874 1.69862 1.36089 1.22547 1.23934 0.86632 0.79227 0.79753 0.82239 1.20285 1.21180 1.20249 1.57431 1.63051 1.21574 1.39957 1.21234 0.99083 0.81781 1.02033 1.01923 0.73201 0.73680 0.73218 1.93501 1.86174 1.75795 1.41377 1.93551 1.83746 1.31379 1.86345 1.31198 1.26656 1.05697 1.14371 1.20708 0.92879 0.95952 0.89360 1.20365 0.94838 0.97360 1.05281 1.19754 0.84143 0.92695 0.92628 1.20717 0.96303 0.98754 1.04623 1.19931 0.91512 0.93870 0.93935 1.21865 0.90945 0.97649 1.03032 1.22809 0.94744 0.89048 0.87320 1.22208 1.01526 1.01061 0.97249 1.21837 0.98777 0.97301 1.01887 1.86892 1.25280 1.62168 1.46504 0.96728 0.88807 0.94804 0.92554 0.93539 0.93114 0.90052 0.83133 0.84702 0.84508 0.88927 0.88892 0.91250 0.90539 0.91663 0.91268 0.90232 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.97 37.16 0.33 -3.05 16 2 C 0.27 6.41 2.62 -69.08 -0.18 6.23 16 3 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 4 C -0.53 -13.44 7.99 -34.44 -0.28 -13.72 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.04 11.32 55.43 0.63 -23.41 16 8 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 N -0.98 -20.23 3.06 -115.85 -0.35 -20.58 16 13 C 0.10 1.85 9.29 59.85 0.56 2.40 16 14 S 2.69 53.15 5.65 -107.50 -0.61 52.54 16 15 O -0.98 -19.59 16.37 -57.17 -0.94 -20.53 16 16 O -0.96 -21.39 15.85 -57.17 -0.91 -22.29 16 17 C -0.69 -12.41 5.98 -39.52 -0.24 -12.65 16 18 C 0.03 0.53 9.50 -39.68 -0.38 0.15 16 19 C -0.16 -2.54 10.06 -39.30 -0.40 -2.94 16 20 C 0.15 2.38 6.94 -38.96 -0.27 2.11 16 21 C -0.20 -2.95 6.27 -104.10 -0.65 -3.60 16 22 C 0.03 0.42 9.51 -39.72 -0.38 0.05 16 23 C -0.10 -1.04 6.19 -26.52 -0.16 -1.21 16 24 C 0.10 1.01 1.26 -89.72 -0.11 0.89 16 25 C -0.16 -1.40 8.85 37.16 0.33 -1.07 16 26 C -0.14 -1.08 8.96 37.16 0.33 -0.75 16 27 O -0.29 -4.11 10.52 -20.16 -0.21 -4.32 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 30 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 34 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 35 H 0.15 2.61 7.61 -52.49 -0.40 2.21 16 36 H 0.14 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.14 1.91 7.63 -52.49 -0.40 1.51 16 38 H 0.09 0.90 7.91 -51.93 -0.41 0.49 16 39 H 0.09 0.80 7.92 -51.93 -0.41 0.39 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 43 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -31.12 376.64 -10.11 -41.23 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.79 Total: 1.73 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -1.59 Total: -25.50 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.27 Total: -43.99 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -2.05 Total: -47.14 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 53.15 SS G_CDS: -0.61 Total: 52.54 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.12 -10.11 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084674337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.688 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds