Wall clock time and date at job start Tue Mar 31 2020 22:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 C 1.76202 * 107.22092 * 90.00378 * 14 12 2 18 18 C 1.38284 * 120.11488 * 269.72553 * 17 14 12 19 19 C 1.37933 * 120.34952 * 179.59539 * 18 17 14 20 20 C 1.39289 * 120.23982 * 0.51635 * 19 18 17 21 21 C 1.38874 * 118.87300 * 0.06894 * 20 19 18 22 22 C 1.37742 * 120.79186 * 359.50440 * 21 20 19 23 23 C 1.51649 * 107.03703 * 179.05151 * 21 20 19 24 24 C 1.54705 * 101.92884 * 344.66380 * 23 21 20 25 25 C 1.53010 * 110.74847 * 266.95412 * 24 23 21 26 26 C 1.52999 * 110.90547 * 143.67486 * 24 23 21 27 27 O 1.36131 * 129.88954 * 180.31112 * 20 19 18 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 33 33 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 34 34 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 35 35 H 1.08000 * 119.82734 * 359.85217 * 18 17 14 36 36 H 1.08005 * 119.87990 * 180.28096 * 19 18 17 37 37 H 1.07997 * 120.01764 * 180.36840 * 22 21 20 38 38 H 1.09001 * 110.93971 * 102.82161 * 23 21 20 39 39 H 1.09000 * 110.93627 * 226.50434 * 23 21 20 40 40 H 1.08999 * 109.46592 * 174.81872 * 25 24 23 41 41 H 1.09002 * 109.46955 * 294.81512 * 25 24 23 42 42 H 1.08997 * 109.47119 * 54.81675 * 25 24 23 43 43 H 1.08992 * 109.47497 * 305.09138 * 26 24 23 44 44 H 1.08999 * 109.47356 * 65.09661 * 26 24 23 45 45 H 1.09005 * 109.46932 * 185.08762 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 6 4.6445 -0.1183 -1.7881 18 6 5.2421 0.7801 -0.9232 19 6 6.5497 0.5983 -0.5236 20 6 7.2834 -0.4871 -0.9967 21 6 6.6760 -1.3757 -1.8743 22 6 5.3674 -1.1971 -2.2653 23 6 7.7109 -2.4253 -2.2309 24 6 9.0222 -1.7557 -1.7560 25 6 9.6827 -0.9849 -2.9009 26 6 9.9861 -2.7930 -1.1766 27 8 8.5669 -0.8554 -0.7318 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1609 3.4844 32 1 0.7375 -2.1444 -1.9993 33 1 2.4628 -2.5819 -1.9863 34 1 1.5295 -2.5969 -0.4708 35 1 4.6808 1.6263 -0.5555 36 1 7.0075 1.3022 0.1557 37 1 4.9056 -1.8991 -2.9437 38 1 7.5282 -3.3526 -1.6879 39 1 7.7312 -2.6027 -3.3061 40 1 10.5524 -0.4475 -2.5228 41 1 9.9964 -1.6840 -3.6761 42 1 8.9700 -0.2743 -3.3192 43 1 9.4864 -3.3512 -0.3850 44 1 10.2977 -3.4793 -1.9640 45 1 10.8612 -2.2875 -0.7680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084674337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:36 Heat of formation + Delta-G solvation = -98.966516 kcal Electronic energy + Delta-G solvation = -28503.864729 eV Core-core repulsion = 24613.123553 eV Total energy + Delta-G solvation = -3890.741176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.50031 -38.85234 -38.33631 -37.88268 -36.88948 -34.96069 -34.50823 -32.72413 -31.49029 -30.90488 -28.42614 -27.71944 -27.22730 -26.98925 -24.18565 -23.09083 -22.54420 -21.75605 -19.91201 -18.71915 -18.50101 -18.29112 -18.21327 -17.42836 -16.94117 -16.71744 -16.26346 -15.50306 -15.34902 -15.23433 -14.92468 -14.86034 -14.45219 -14.39665 -14.16192 -13.89089 -13.71010 -13.66187 -13.40742 -13.27356 -13.18640 -13.12931 -12.97402 -12.95801 -12.81501 -12.71628 -12.69869 -12.31768 -12.21348 -12.12597 -12.02427 -11.91908 -11.83922 -11.76277 -11.14978 -10.48431 -10.10876 -9.70055 -9.50946 -8.08673 -6.22790 -0.55618 -0.20941 0.14824 1.44478 1.45427 1.52324 1.91758 2.10526 2.37472 2.47046 2.83200 3.15628 3.19722 3.36574 3.51668 3.69742 3.78489 3.96495 4.03517 4.12668 4.13218 4.35067 4.51896 4.62055 4.67694 4.71515 4.73505 4.76666 4.82286 4.83860 4.89662 4.97369 4.99481 5.01967 5.03257 5.11570 5.16108 5.17378 5.24597 5.27774 5.44590 5.62518 5.71607 5.86454 6.00611 6.11414 6.29955 6.85520 7.46407 8.95631 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.004394 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.341734 B = 6370.734931 C = 7754.977044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.271 3.729 3 H 0.030 0.970 4 C -0.531 4.531 5 H 0.065 0.935 6 C 0.022 3.978 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 N -0.987 5.987 13 C 0.096 3.904 14 S 2.701 3.299 15 O -0.981 6.981 16 O -0.994 6.994 17 C -0.706 4.706 18 C 0.010 3.990 19 C -0.170 4.170 20 C 0.152 3.848 21 C -0.201 4.201 22 C 0.020 3.980 23 C -0.096 4.096 24 C 0.089 3.911 25 C -0.162 4.162 26 C -0.138 4.138 27 O -0.307 6.307 28 H 0.022 0.978 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.447 -8.909 -9.633 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.048 0.952 4 C -0.570 4.570 5 H 0.083 0.917 6 C -0.178 4.178 7 N -0.554 5.554 8 Si 0.777 3.223 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.193 1.193 12 N -0.827 5.827 13 C -0.049 4.049 14 S 2.794 3.206 15 O -0.972 6.972 16 O -0.985 6.985 17 C -0.794 4.794 18 C -0.010 4.010 19 C -0.189 4.189 20 C 0.105 3.895 21 C -0.203 4.203 22 C 0.001 3.999 23 C -0.132 4.132 24 C 0.052 3.948 25 C -0.219 4.219 26 C -0.195 4.195 27 O -0.221 6.221 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.125 0.875 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.127 0.873 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.236 -8.286 -10.051 20.816 hybrid contribution 0.354 -0.056 1.600 1.640 sum 16.590 -8.343 -8.451 20.402 Atomic orbital electron populations 1.21943 0.97478 1.00239 1.00165 1.18465 0.92175 0.91594 0.81071 0.95222 1.21580 1.31539 1.13114 0.90797 0.91712 1.25584 0.95179 0.95577 1.01484 1.69990 1.37218 1.23791 1.24361 0.85722 0.78451 0.79036 0.79071 1.20338 1.21153 1.19304 1.57321 1.63861 1.22730 1.38760 1.21476 1.00827 0.80181 1.02463 1.01307 0.73643 0.72718 0.72890 1.93482 1.86670 1.75608 1.41404 1.93501 1.84715 1.33528 1.86750 1.30802 1.25392 1.07337 1.15886 1.20702 0.93814 0.96135 0.90334 1.20507 0.94430 0.98319 1.05643 1.19916 0.84984 0.92429 0.92209 1.21149 0.96247 0.99477 1.03402 1.20168 0.92156 0.93456 0.94103 1.22058 0.89362 0.96833 1.04984 1.23254 0.95193 0.89158 0.87185 1.22242 1.01022 1.01302 0.97323 1.21894 0.98022 0.96886 1.02677 1.86899 1.24324 1.62848 1.48022 0.95913 0.91029 0.93626 0.92670 0.92284 0.90402 0.90460 0.84337 0.83370 0.82570 0.87515 0.86235 0.90902 0.87597 0.93391 0.91824 0.87266 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 8.97 71.98 0.65 -5.96 16 2 C 0.27 13.34 2.62 44.25 0.12 13.45 16 3 H 0.03 1.65 6.91 -2.39 -0.02 1.63 16 4 C -0.53 -27.28 7.99 25.60 0.20 -27.08 16 5 H 0.06 3.23 7.33 -2.91 -0.02 3.21 16 6 C 0.02 1.15 5.30 84.66 0.45 1.60 16 7 N -0.91 -50.70 11.32 21.45 0.24 -50.46 16 8 Si 0.95 41.97 29.54 68.60 2.03 44.00 16 9 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 N -0.99 -40.89 3.06 -520.44 -1.59 -42.48 16 13 C 0.10 3.25 9.29 127.77 1.19 4.43 16 14 S 2.70 108.11 5.65 -56.49 -0.32 107.79 16 15 O -0.98 -38.62 16.37 -128.00 -2.10 -40.71 16 16 O -0.99 -46.26 15.85 -128.00 -2.03 -48.29 16 17 C -0.71 -25.37 5.98 22.31 0.13 -25.24 16 18 C 0.01 0.35 9.50 22.21 0.21 0.56 16 19 C -0.17 -5.47 10.06 22.45 0.23 -5.24 16 20 C 0.15 4.50 6.94 22.68 0.16 4.66 16 21 C -0.20 -5.44 6.27 -19.53 -0.12 -5.57 16 22 C 0.02 0.62 9.51 22.18 0.21 0.83 16 23 C -0.10 -1.69 6.19 30.73 0.19 -1.50 16 24 C 0.09 1.53 1.26 -10.21 -0.01 1.52 16 25 C -0.16 -2.27 8.85 71.99 0.64 -1.63 16 26 C -0.14 -1.60 8.96 71.98 0.65 -0.96 16 27 O -0.31 -8.00 10.52 -95.04 -1.00 -9.00 16 28 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 30 H 0.04 2.00 7.67 -2.38 -0.02 1.98 16 31 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 34 H 0.08 2.68 7.02 -2.39 -0.02 2.66 16 35 H 0.14 5.20 7.61 -2.91 -0.02 5.17 16 36 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.16 4.00 7.63 -2.91 -0.02 3.97 16 38 H 0.11 1.64 7.91 -2.39 -0.02 1.62 16 39 H 0.12 1.51 7.92 -2.39 -0.02 1.49 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 43 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 44 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -67.69 376.64 1.09 -66.60 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.98 Total: 18.67 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 4.88 Total: -46.12 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -1.35 Total: -92.94 kcal Atomic # 8 Polarization: -92.88 SS G_CDS: -5.12 Total: -98.00 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 108.11 SS G_CDS: -0.32 Total: 107.79 kcal Total: -67.69 1.09 -66.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084674337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.369 kcal (2) G-P(sol) polarization free energy of solvation -67.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds