Wall clock time and date at job start Tue Mar 31 2020 22:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 C 1.76195 * 107.21884 * 89.99923 * 14 12 2 18 18 C 1.38286 * 120.11775 * 269.72443 * 17 14 12 19 19 C 1.37936 * 120.34803 * 179.59678 * 18 17 14 20 20 C 1.39285 * 120.24158 * 0.52175 * 19 18 17 21 21 C 1.38877 * 118.87539 * 0.06115 * 20 19 18 22 22 C 1.37745 * 120.78685 * 359.51226 * 21 20 19 23 23 C 1.51647 * 107.03926 * 179.05055 * 21 20 19 24 24 C 1.54710 * 101.93283 * 344.67127 * 23 21 20 25 25 C 1.52995 * 110.74525 * 266.95424 * 24 23 21 26 26 C 1.52993 * 110.90861 * 143.66760 * 24 23 21 27 27 O 1.36135 * 129.89132 * 180.31200 * 20 19 18 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 1.07997 * 119.82609 * 359.86169 * 18 17 14 36 36 H 1.08000 * 119.87900 * 180.28243 * 19 18 17 37 37 H 1.07997 * 120.01231 * 180.36123 * 22 21 20 38 38 H 1.09001 * 110.93043 * 102.82637 * 23 21 20 39 39 H 1.08994 * 110.94233 * 226.50800 * 23 21 20 40 40 H 1.09002 * 109.47077 * 174.81140 * 25 24 23 41 41 H 1.09003 * 109.47039 * 294.80977 * 25 24 23 42 42 H 1.08997 * 109.47853 * 54.81458 * 25 24 23 43 43 H 1.08996 * 109.47754 * 305.09484 * 26 24 23 44 44 H 1.09004 * 109.47064 * 65.09875 * 26 24 23 45 45 H 1.09004 * 109.46921 * 185.09186 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 6 1.8960 0.8537 3.4711 18 6 1.4141 2.1337 3.2672 19 6 0.5662 2.7140 4.1875 20 6 0.1964 2.0189 5.3365 21 6 0.6964 0.7387 5.5359 22 6 1.5361 0.1578 4.6114 23 6 0.1479 0.2491 6.8622 24 6 -0.3614 1.5623 7.5022 25 6 0.7165 2.1855 8.3912 26 6 -1.6448 1.3195 8.2988 27 8 -0.6215 2.3935 6.3583 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.6998 2.6804 2.3807 36 1 0.1907 3.7124 4.0184 37 1 1.9131 -0.8407 4.7763 38 1 -0.6716 -0.4531 6.7093 39 1 0.9354 -0.1995 7.4677 40 1 0.3713 3.1526 8.7570 41 1 0.9154 1.5271 9.2369 42 1 1.6307 2.3210 7.8134 43 1 -2.3877 0.8472 7.6561 44 1 -1.4292 0.6673 9.1452 45 1 -2.0318 2.2712 8.6630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084674338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:41 Heat of formation + Delta-G solvation = -78.022474 kcal Electronic energy + Delta-G solvation = -28262.675291 eV Core-core repulsion = 24372.842317 eV Total energy + Delta-G solvation = -3889.832974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57588 -37.80790 -36.67784 -36.16138 -35.21203 -34.17246 -32.57426 -31.77779 -30.36452 -29.08419 -27.87916 -26.85148 -25.58641 -25.12409 -23.05573 -22.04245 -20.99305 -20.65035 -18.38937 -17.45222 -17.29485 -16.78881 -16.49281 -16.12336 -15.87130 -15.22393 -14.64526 -14.45597 -14.31341 -14.07409 -13.52836 -13.49390 -13.31816 -13.08581 -12.97480 -12.81972 -12.78729 -12.56244 -12.40411 -12.12967 -11.96807 -11.73221 -11.51749 -11.41301 -11.33753 -11.21476 -11.16405 -10.94643 -10.91275 -10.78917 -10.62366 -10.38477 -10.26449 -9.97268 -9.24911 -9.01325 -8.53207 -8.43698 -7.95048 -6.05965 -4.12505 0.79168 1.11125 1.23852 2.86393 3.31950 3.33852 3.36219 3.39885 3.79142 4.08397 4.14162 4.35983 4.40505 4.43334 4.58682 4.70006 4.89813 5.00687 5.11368 5.19341 5.24015 5.25478 5.28979 5.36375 5.40016 5.51508 5.59388 5.60532 5.65539 5.78712 5.87319 5.98368 6.15148 6.16406 6.19256 6.36361 6.47739 6.63089 6.78860 6.82214 6.99629 7.02794 7.44571 7.64050 7.79625 8.04918 8.28282 8.89376 9.53072 10.99733 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.003159 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.710381 B = 8861.049499 C = 9196.894053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.267 3.733 3 H 0.061 0.939 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.980 5.980 13 C 0.108 3.892 14 S 2.687 3.313 15 O -0.976 6.976 16 O -0.952 6.952 17 C -0.699 4.699 18 C 0.021 3.979 19 C -0.160 4.160 20 C 0.154 3.846 21 C -0.201 4.201 22 C 0.027 3.973 23 C -0.099 4.099 24 C 0.098 3.902 25 C -0.164 4.164 26 C -0.141 4.141 27 O -0.294 6.294 28 H 0.094 0.906 29 H 0.034 0.966 30 H 0.011 0.989 31 H 0.264 0.736 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 0.422 20.637 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.164 3.836 3 H 0.079 0.921 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.820 5.820 13 C -0.038 4.038 14 S 2.776 3.224 15 O -0.966 6.966 16 O -0.943 6.943 17 C -0.784 4.784 18 C 0.002 3.998 19 C -0.179 4.179 20 C 0.107 3.893 21 C -0.202 4.202 22 C 0.008 3.992 23 C -0.136 4.136 24 C 0.061 3.939 25 C -0.221 4.221 26 C -0.198 4.198 27 O -0.208 6.208 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.198 0.780 20.546 20.985 hybrid contribution -0.458 -0.335 -0.517 0.768 sum -4.656 0.445 20.029 20.568 Atomic orbital electron populations 1.22144 0.98288 0.99835 1.00718 1.18789 0.91299 0.93167 0.80301 0.92105 1.21289 1.31682 1.13057 0.89917 0.91884 1.24902 0.94951 0.95015 0.98964 1.69847 1.36460 1.22698 1.23902 0.86549 0.79377 0.79563 0.81873 1.21239 1.20116 1.20254 1.57426 1.70392 1.19549 1.34670 1.21190 1.01894 0.81805 0.98917 1.02097 0.74088 0.73464 0.72707 1.93499 1.68620 1.59376 1.75103 1.93572 1.73407 1.55980 1.71295 1.31397 1.23974 1.07033 1.15970 1.20748 0.89890 0.92141 0.97021 1.20375 1.02402 1.01216 0.93901 1.19766 0.88069 0.92141 0.89277 1.20756 1.04301 0.95773 0.99407 1.19973 0.90915 0.98540 0.89775 1.21879 1.01452 0.97396 0.92843 1.22821 0.96675 0.88504 0.85890 1.22210 0.98295 1.01931 0.99661 1.21839 0.95211 1.03022 0.99724 1.86895 1.55124 1.58222 1.20596 0.88761 0.94702 0.97004 0.92629 0.92945 0.93241 0.90832 0.83122 0.84616 0.84356 0.88866 0.88789 0.91203 0.90474 0.91657 0.91273 0.90175 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.95 37.16 0.33 -3.07 16 2 C 0.27 6.46 2.62 -69.09 -0.18 6.28 16 3 H 0.06 1.60 6.91 -51.92 -0.36 1.25 16 4 C -0.52 -13.87 8.37 -34.44 -0.29 -14.15 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.55 11.32 55.43 0.63 -23.93 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 N -0.98 -20.29 3.06 -115.86 -0.35 -20.65 16 13 C 0.11 1.91 9.53 59.85 0.57 2.48 16 14 S 2.69 53.13 5.65 -107.50 -0.61 52.52 16 15 O -0.98 -19.84 16.37 -57.17 -0.94 -20.78 16 16 O -0.95 -21.76 15.85 -57.17 -0.91 -22.66 16 17 C -0.70 -11.72 5.98 -39.52 -0.24 -11.96 16 18 C 0.02 0.34 9.50 -39.67 -0.38 -0.04 16 19 C -0.16 -2.28 10.06 -39.30 -0.40 -2.68 16 20 C 0.15 2.15 6.94 -38.96 -0.27 1.88 16 21 C -0.20 -2.67 6.27 -104.10 -0.65 -3.33 16 22 C 0.03 0.40 9.51 -39.72 -0.38 0.02 16 23 C -0.10 -0.95 6.18 -26.52 -0.16 -1.11 16 24 C 0.10 0.91 1.26 -89.73 -0.11 0.79 16 25 C -0.16 -1.28 8.85 37.15 0.33 -0.95 16 26 C -0.14 -0.94 8.96 37.15 0.33 -0.60 16 27 O -0.29 -3.72 10.52 -20.17 -0.21 -3.94 16 28 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 29 H 0.03 0.74 6.66 -51.93 -0.35 0.40 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 34 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 35 H 0.15 2.36 7.61 -52.49 -0.40 1.96 16 36 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.14 1.82 7.63 -52.49 -0.40 1.42 16 38 H 0.09 0.79 7.91 -51.93 -0.41 0.38 16 39 H 0.09 0.73 7.92 -51.93 -0.41 0.32 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 43 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -32.11 375.96 -10.05 -42.16 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.72 Total: 0.43 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -1.59 Total: -24.81 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.27 Total: -44.57 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -2.05 Total: -47.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 53.13 SS G_CDS: -0.61 Total: 52.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.11 -10.05 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084674338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.860 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds