Wall clock time and date at job start Tue Mar 31 2020 22:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 C 1.76195 * 107.21884 * 89.99923 * 14 12 2 18 18 C 1.38286 * 120.11775 * 269.72443 * 17 14 12 19 19 C 1.37936 * 120.34803 * 179.59678 * 18 17 14 20 20 C 1.39285 * 120.24158 * 0.52175 * 19 18 17 21 21 C 1.38877 * 118.87539 * 0.06115 * 20 19 18 22 22 C 1.37745 * 120.78685 * 359.51226 * 21 20 19 23 23 C 1.51647 * 107.03926 * 179.05055 * 21 20 19 24 24 C 1.54710 * 101.93283 * 344.67127 * 23 21 20 25 25 C 1.52995 * 110.74525 * 266.95424 * 24 23 21 26 26 C 1.52993 * 110.90861 * 143.66760 * 24 23 21 27 27 O 1.36135 * 129.89132 * 180.31200 * 20 19 18 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 1.07997 * 119.82609 * 359.86169 * 18 17 14 36 36 H 1.08000 * 119.87900 * 180.28243 * 19 18 17 37 37 H 1.07997 * 120.01231 * 180.36123 * 22 21 20 38 38 H 1.09001 * 110.93043 * 102.82637 * 23 21 20 39 39 H 1.08994 * 110.94233 * 226.50800 * 23 21 20 40 40 H 1.09002 * 109.47077 * 174.81140 * 25 24 23 41 41 H 1.09003 * 109.47039 * 294.80977 * 25 24 23 42 42 H 1.08997 * 109.47853 * 54.81458 * 25 24 23 43 43 H 1.08996 * 109.47754 * 305.09484 * 26 24 23 44 44 H 1.09004 * 109.47064 * 65.09875 * 26 24 23 45 45 H 1.09004 * 109.46921 * 185.09186 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 6 1.8960 0.8537 3.4711 18 6 1.4141 2.1337 3.2672 19 6 0.5662 2.7140 4.1875 20 6 0.1964 2.0189 5.3365 21 6 0.6964 0.7387 5.5359 22 6 1.5361 0.1578 4.6114 23 6 0.1479 0.2491 6.8622 24 6 -0.3614 1.5623 7.5022 25 6 0.7165 2.1855 8.3912 26 6 -1.6448 1.3195 8.2988 27 8 -0.6215 2.3935 6.3583 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.6998 2.6804 2.3807 36 1 0.1907 3.7124 4.0184 37 1 1.9131 -0.8407 4.7763 38 1 -0.6716 -0.4531 6.7093 39 1 0.9354 -0.1995 7.4677 40 1 0.3713 3.1526 8.7570 41 1 0.9154 1.5271 9.2369 42 1 1.6307 2.3210 7.8134 43 1 -2.3877 0.8472 7.6561 44 1 -1.4292 0.6673 9.1452 45 1 -2.0318 2.2712 8.6630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084674338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:40 Heat of formation + Delta-G solvation = -98.209947 kcal Electronic energy + Delta-G solvation = -28263.550686 eV Core-core repulsion = 24372.842317 eV Total energy + Delta-G solvation = -3890.708369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.51143 -38.87939 -38.33000 -37.89251 -36.87035 -34.96249 -34.51867 -32.73970 -31.49930 -30.90750 -28.42164 -27.72193 -27.28247 -26.98105 -24.21681 -23.10277 -22.48646 -21.75790 -19.88791 -18.78613 -18.57769 -18.42542 -18.00205 -17.40606 -16.93697 -16.71738 -16.27490 -15.52722 -15.37263 -15.19926 -14.93477 -14.79471 -14.62757 -14.40569 -14.17327 -13.90107 -13.70607 -13.66030 -13.36525 -13.26769 -13.15828 -13.13406 -12.97870 -12.95514 -12.82115 -12.76498 -12.58244 -12.34070 -12.23923 -12.15735 -11.99708 -11.92465 -11.82828 -11.72192 -11.14305 -10.48489 -10.13271 -9.70132 -9.53546 -8.09847 -6.23403 -0.58487 -0.24574 0.12306 1.44862 1.46906 1.53818 1.90639 2.11271 2.39860 2.46510 2.85089 3.14756 3.18481 3.36229 3.51001 3.68943 3.78573 3.95897 4.02573 4.10688 4.11020 4.34183 4.51469 4.62546 4.67587 4.69713 4.71500 4.76934 4.83928 4.84648 4.89920 4.96465 4.97905 4.99942 5.03072 5.10704 5.14074 5.16771 5.19939 5.25396 5.42380 5.62541 5.73784 5.88164 5.99291 6.13061 6.30987 6.83628 7.45251 8.94315 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.003159 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.710381 B = 8861.049499 C = 9196.894053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.030 0.970 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.282 1.282 10 H -0.278 1.278 11 H -0.266 1.266 12 N -0.989 5.989 13 C 0.099 3.901 14 S 2.696 3.304 15 O -0.985 6.985 16 O -0.994 6.994 17 C -0.706 4.706 18 C 0.005 3.995 19 C -0.165 4.165 20 C 0.153 3.847 21 C -0.199 4.199 22 C 0.021 3.979 23 C -0.097 4.097 24 C 0.090 3.910 25 C -0.163 4.163 26 C -0.138 4.138 27 O -0.305 6.305 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 -0.819 23.222 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.168 3.832 3 H 0.048 0.952 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.191 1.191 12 N -0.828 5.828 13 C -0.046 4.046 14 S 2.791 3.209 15 O -0.975 6.975 16 O -0.985 6.985 17 C -0.795 4.795 18 C -0.015 4.015 19 C -0.184 4.184 20 C 0.106 3.894 21 C -0.200 4.200 22 C 0.002 3.998 23 C -0.134 4.134 24 C 0.053 3.947 25 C -0.220 4.220 26 C -0.195 4.195 27 O -0.219 6.219 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.159 0.841 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.354 -0.501 23.115 23.732 hybrid contribution -0.141 0.108 -1.127 1.140 sum -5.495 -0.393 21.988 22.668 Atomic orbital electron populations 1.21940 0.97090 1.00297 1.00352 1.18457 0.92082 0.91676 0.81005 0.95240 1.21620 1.31764 1.13148 0.91308 0.92317 1.25635 0.95189 0.95714 1.01618 1.69968 1.37210 1.23679 1.24431 0.85654 0.78495 0.79032 0.78718 1.20736 1.20410 1.19108 1.57297 1.70346 1.20867 1.34289 1.21423 1.01945 0.80032 1.01181 1.01408 0.74111 0.72731 0.72687 1.93472 1.69364 1.59702 1.74996 1.93513 1.75012 1.57194 1.72770 1.30765 1.24960 1.07585 1.16184 1.20752 0.90968 0.92222 0.97545 1.20520 1.01963 1.02069 0.93871 1.19942 0.87677 0.92414 0.89336 1.21141 1.02955 0.95512 1.00440 1.20162 0.91174 0.99179 0.89280 1.22070 1.02511 0.97913 0.90872 1.23238 0.98480 0.87845 0.85128 1.22248 0.96937 1.02818 1.00011 1.21892 0.93705 1.03783 1.00094 1.86906 1.54650 1.59167 1.21189 0.91232 0.93699 0.95155 0.92606 0.93365 0.89948 0.90307 0.84051 0.82917 0.82720 0.87273 0.86440 0.90874 0.87726 0.93431 0.91601 0.87421 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.28 8.95 71.98 0.64 -5.64 16 2 C 0.27 13.51 2.62 44.24 0.12 13.63 16 3 H 0.03 1.65 6.91 -2.38 -0.02 1.63 16 4 C -0.54 -29.33 8.37 25.60 0.21 -29.11 16 5 H 0.06 3.16 7.65 -2.91 -0.02 3.13 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -51.48 11.32 21.45 0.24 -51.24 16 8 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 N -0.99 -41.42 3.06 -520.46 -1.59 -43.01 16 13 C 0.10 3.42 9.53 127.77 1.22 4.64 16 14 S 2.70 108.86 5.65 -56.49 -0.32 108.55 16 15 O -0.98 -39.96 16.37 -128.00 -2.10 -42.06 16 16 O -0.99 -47.78 15.85 -128.00 -2.03 -49.81 16 17 C -0.71 -23.67 5.98 22.31 0.13 -23.54 16 18 C 0.00 0.15 9.50 22.21 0.21 0.36 16 19 C -0.16 -4.65 10.06 22.45 0.23 -4.42 16 20 C 0.15 4.04 6.94 22.67 0.16 4.20 16 21 C -0.20 -4.83 6.27 -19.53 -0.12 -4.96 16 22 C 0.02 0.59 9.51 22.18 0.21 0.81 16 23 C -0.10 -1.50 6.18 30.73 0.19 -1.31 16 24 C 0.09 1.36 1.26 -10.21 -0.01 1.34 16 25 C -0.16 -2.03 8.85 71.98 0.64 -1.40 16 26 C -0.14 -1.31 8.96 71.98 0.65 -0.67 16 27 O -0.31 -7.04 10.52 -95.08 -1.00 -8.04 16 28 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 29 H 0.04 1.91 6.66 -2.39 -0.02 1.89 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 2.25 7.79 -2.38 -0.02 2.23 16 34 H 0.08 2.61 6.43 -2.39 -0.02 2.59 16 35 H 0.14 4.75 7.61 -2.91 -0.02 4.73 16 36 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 37 H 0.16 3.71 7.63 -2.91 -0.02 3.69 16 38 H 0.11 1.39 7.91 -2.39 -0.02 1.37 16 39 H 0.12 1.30 7.92 -2.39 -0.02 1.28 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.05 0.77 8.12 -2.39 -0.02 0.75 16 43 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16 44 H 0.11 0.45 8.14 -2.38 -0.02 0.44 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -70.51 375.96 1.13 -69.37 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.99 Total: 15.45 kcal Atomic # 6 Polarization: -49.53 SS G_CDS: 4.92 Total: -44.61 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -1.35 Total: -94.25 kcal Atomic # 8 Polarization: -94.79 SS G_CDS: -5.12 Total: -99.91 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 108.86 SS G_CDS: -0.32 Total: 108.55 kcal Total: -70.51 1.13 -69.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084674338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.835 kcal (2) G-P(sol) polarization free energy of solvation -70.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds