Wall clock time and date at job start Tue Mar 31 2020 23:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99834 * 2 1 4 4 C 1.38811 * 119.93595 * 0.27989 * 3 2 1 5 5 C 1.38310 * 120.07162 * 179.64759 * 4 3 2 6 6 C 1.37956 * 119.75357 * 359.96049 * 5 4 3 7 7 C 1.38423 * 120.55534 * 0.75460 * 6 5 4 8 8 C 1.38629 * 119.92971 * 180.02562 * 3 2 1 9 9 N 1.39716 * 119.96566 * 177.49300 * 7 6 5 10 10 S 1.65596 * 121.01208 * 112.28709 * 9 7 6 11 11 O 1.42097 * 104.27819 * 26.10094 * 10 9 7 12 12 O 1.42107 * 104.27623 * 153.95378 * 10 9 7 13 13 C 1.81399 * 104.45174 * 270.02207 * 10 9 7 14 14 C 1.53000 * 109.47098 * 179.97438 * 13 10 9 15 15 C 1.50696 * 109.46897 * 180.02562 * 14 13 10 16 16 H 1.08004 * 120.00153 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00244 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99594 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00411 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47320 * 60.00109 * 19 17 15 21 21 H 1.48504 * 109.47463 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47286 * 300.00046 * 19 17 15 23 23 C 1.47164 * 117.96895 * 292.31280 * 9 7 6 24 24 C 1.51049 * 110.43100 * 83.89251 * 23 9 7 25 25 C 1.52253 * 113.59752 * 295.71351 * 24 23 9 26 26 C 1.51832 * 120.02227 * 182.01305 * 6 5 4 27 27 H 1.08999 * 109.47026 * 59.99667 * 1 2 3 28 28 H 1.08994 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46700 * 300.00129 * 1 2 3 30 30 H 1.08000 * 119.96098 * 359.38703 * 4 3 2 31 31 H 1.08002 * 120.12621 * 180.24352 * 5 4 3 32 32 H 1.07999 * 120.19313 * 359.78194 * 8 3 2 33 33 H 1.08995 * 109.47215 * 300.00576 * 13 10 9 34 34 H 1.09005 * 109.46815 * 59.99997 * 13 10 9 35 35 H 1.08995 * 109.47638 * 300.00415 * 14 13 10 36 36 H 1.09000 * 109.46582 * 60.00664 * 14 13 10 37 37 H 0.96999 * 120.00098 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.31521 * 323.59360 * 23 9 7 39 39 H 1.08998 * 109.30272 * 204.18081 * 23 9 7 40 40 H 1.08999 * 108.65467 * 174.64822 * 24 23 9 41 41 H 1.08999 * 108.66232 * 56.77625 * 24 23 9 42 42 H 1.08998 * 109.13332 * 309.10898 * 25 24 23 43 43 H 1.08999 * 109.13410 * 189.98685 * 25 24 23 44 44 H 1.08995 * 109.52043 * 7.48994 * 26 6 5 45 45 H 1.09004 * 109.51496 * 127.60624 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2886 2.3742 0.0059 5 6 1.9136 3.6080 0.0133 6 6 3.2914 3.6776 0.0156 7 6 4.0543 2.5228 -0.0051 8 6 3.4304 1.2818 -0.0005 9 7 5.4480 2.6079 -0.0555 10 16 6.3789 2.1301 1.2281 11 8 5.5805 1.1658 1.9002 12 8 7.6238 1.7718 0.6439 13 6 6.5573 3.6255 2.2393 14 6 7.4077 3.3095 3.4713 15 6 7.5554 4.5516 4.3117 16 1 7.0890 5.4741 3.9987 17 6 8.2860 4.5105 5.4803 18 7 8.8544 3.3874 5.8613 19 14 8.4685 6.0500 6.5224 20 1 7.1268 6.5172 6.9545 21 1 9.2951 5.7437 7.7175 22 1 9.1293 7.1132 5.7235 23 6 6.0633 3.1356 -1.2837 24 6 6.0867 4.6457 -1.2550 25 6 4.7011 5.2767 -1.2532 26 6 3.9838 5.0277 0.0698 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 0.2102 2.3158 0.0004 31 1 1.3252 4.5137 0.0218 32 1 4.0206 0.3773 0.0026 33 1 7.0427 4.4052 1.6525 34 1 5.5727 3.9693 2.5564 35 1 6.9219 2.5299 4.0580 36 1 8.3923 2.9655 3.1545 37 1 9.3681 3.3583 6.6836 38 1 5.4891 2.8004 -2.1474 39 1 7.0836 2.7609 -1.3653 40 1 6.6314 5.0026 -2.1290 41 1 6.6183 4.9693 -0.3601 42 1 4.1126 4.8489 -2.0648 43 1 4.7976 6.3509 -1.4108 44 1 3.2435 5.8103 0.2357 45 1 4.7081 5.0330 0.8844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089103230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:39 Heat of formation + Delta-G solvation = -91.298779 kcal Electronic energy + Delta-G solvation = -28536.879516 eV Core-core repulsion = 24646.470838 eV Total energy + Delta-G solvation = -3890.408678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54773 -38.86413 -36.79915 -35.94771 -35.49228 -34.30677 -33.83369 -31.21328 -31.15803 -30.38349 -27.48786 -26.82161 -25.61147 -24.39162 -22.85358 -22.02332 -20.91179 -20.46426 -19.05597 -18.04521 -17.36885 -16.59091 -16.44001 -16.14519 -15.82000 -15.75347 -15.35028 -14.92625 -14.58418 -14.44395 -13.93109 -13.85905 -13.64243 -13.38561 -13.23230 -13.04930 -12.62014 -12.45766 -12.40931 -12.08665 -11.80761 -11.73416 -11.61068 -11.54050 -11.23394 -11.08100 -11.05804 -10.93361 -10.71973 -10.68956 -10.63884 -10.41915 -10.36363 -9.80129 -9.53272 -9.18353 -8.61273 -8.49915 -8.08977 -6.12041 -4.17779 0.61216 1.24522 1.38999 2.84763 3.24012 3.27227 3.32078 3.33788 3.61919 4.24524 4.37917 4.52530 4.62882 4.64238 4.76760 4.87886 4.88959 4.96263 4.98875 5.02615 5.11984 5.22968 5.28181 5.30789 5.40289 5.51017 5.57608 5.61278 5.65922 5.76358 5.80855 5.88511 5.93395 5.98689 6.15725 6.17824 6.22013 6.27846 6.36769 6.50537 6.60402 6.99856 7.29109 7.32930 7.35495 7.80394 8.17116 8.85066 9.46765 10.98998 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.003665 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.876033 B = 7638.203984 C = 7963.009256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.128 3.872 4 C -0.205 4.205 5 C -0.073 4.073 6 C -0.117 4.117 7 C 0.188 3.812 8 C -0.129 4.129 9 N -0.956 5.956 10 S 2.580 3.420 11 O -0.951 6.951 12 O -0.958 6.958 13 C -0.586 4.586 14 C 0.030 3.970 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.120 3.880 24 C -0.148 4.148 25 C -0.109 4.109 26 C -0.081 4.081 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.691 1.179 -16.990 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.083 3.917 4 C -0.225 4.225 5 C -0.092 4.092 6 C -0.120 4.120 7 C 0.094 3.906 8 C -0.150 4.150 9 N -0.784 5.784 10 S 2.681 3.319 11 O -0.941 6.941 12 O -0.949 6.949 13 C -0.719 4.719 14 C -0.009 4.009 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.004 4.004 24 C -0.187 4.187 25 C -0.147 4.147 26 C -0.118 4.118 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.078 -0.019 -16.774 22.555 hybrid contribution -0.317 1.568 0.787 1.783 sum -15.395 1.550 -15.987 22.248 Atomic orbital electron populations 1.23038 0.78583 1.03831 1.01235 1.86095 1.21168 1.26858 1.88810 1.18753 0.91703 0.84225 0.97051 1.21251 0.99892 0.92231 1.09091 1.20643 0.93157 0.97043 0.98341 1.20094 0.93435 0.94990 1.03519 1.16622 0.82471 0.91582 0.99957 1.20638 0.91722 0.98231 1.04435 1.55879 1.12248 1.80250 1.30059 1.06161 0.73420 0.78331 0.73976 1.93571 1.68924 1.57430 1.74225 1.93533 1.43021 1.82465 1.75857 1.30543 1.10300 1.17853 1.13221 1.18962 0.93889 0.99266 0.88819 1.20941 1.33179 0.95371 1.06415 0.92065 1.25064 0.95294 0.96486 0.97595 1.69945 1.33414 1.25796 1.23663 0.86530 0.78244 0.82864 0.79635 1.20069 1.21064 1.20067 1.21189 0.99673 0.93502 0.86024 1.21625 0.97897 0.95746 1.03466 1.21216 0.95701 1.00458 0.97314 1.20768 0.99543 0.92874 0.98624 0.92801 0.88360 0.92595 0.85396 0.85341 0.84458 0.86118 0.86094 0.94849 0.94862 0.92457 0.90255 0.88114 0.90432 0.91290 0.91812 0.91439 0.90852 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -4.02 10.49 -19.43 -0.20 -4.23 16 3 C 0.13 1.74 6.68 -39.23 -0.26 1.47 16 4 C -0.21 -2.27 9.04 -39.34 -0.36 -2.63 16 5 C -0.07 -0.79 9.68 -39.66 -0.38 -1.17 16 6 C -0.12 -1.46 5.10 -104.10 -0.53 -1.99 16 7 C 0.19 2.75 4.91 -83.95 -0.41 2.33 16 8 C -0.13 -1.99 8.85 -39.19 -0.35 -2.33 16 9 N -0.96 -14.26 2.52 -59.30 -0.15 -14.41 16 10 S 2.58 49.27 5.44 -107.50 -0.58 48.69 16 11 O -0.95 -20.82 16.20 -57.54 -0.93 -21.75 16 12 O -0.96 -20.17 16.63 -57.54 -0.96 -21.12 16 13 C -0.59 -11.54 5.46 37.16 0.20 -11.34 16 14 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 15 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.12 1.42 5.89 -4.66 -0.03 1.39 16 24 C -0.15 -1.50 5.51 -28.09 -0.15 -1.66 16 25 C -0.11 -1.02 5.61 -27.35 -0.15 -1.17 16 26 C -0.08 -0.88 5.48 -27.56 -0.15 -1.03 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.39 7.65 -51.93 -0.40 0.00 16 30 H 0.13 1.05 6.28 -52.49 -0.33 0.72 16 31 H 0.13 1.04 7.98 -52.49 -0.42 0.62 16 32 H 0.14 2.24 7.80 -52.49 -0.41 1.83 16 33 H 0.12 2.09 7.13 -51.93 -0.37 1.72 16 34 H 0.12 2.20 7.46 -51.92 -0.39 1.82 16 35 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 39 H 0.10 1.23 6.91 -51.93 -0.36 0.87 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.76 6.96 -51.93 -0.36 0.40 16 42 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.66 7.93 -51.93 -0.41 0.25 16 45 H 0.08 0.97 6.42 -51.93 -0.33 0.64 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -34.98 369.88 -10.33 -45.31 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.66 Total: 0.98 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -2.13 Total: -29.40 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.59 Total: -40.24 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -2.09 Total: -47.10 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 49.27 SS G_CDS: -0.58 Total: 48.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.98 -10.33 -45.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089103230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.988 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds