Wall clock time and date at job start Tue Mar 31 2020 23:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99834 * 2 1 4 4 C 1.38811 * 119.93595 * 0.27989 * 3 2 1 5 5 C 1.38310 * 120.07162 * 179.64759 * 4 3 2 6 6 C 1.37956 * 119.75357 * 359.96049 * 5 4 3 7 7 C 1.38423 * 120.55534 * 0.75460 * 6 5 4 8 8 C 1.38629 * 119.92971 * 180.02562 * 3 2 1 9 9 N 1.39716 * 119.96566 * 177.49300 * 7 6 5 10 10 S 1.65596 * 121.01208 * 112.28709 * 9 7 6 11 11 O 1.42097 * 104.27819 * 26.10094 * 10 9 7 12 12 O 1.42107 * 104.27623 * 153.95378 * 10 9 7 13 13 C 1.81399 * 104.45174 * 270.02207 * 10 9 7 14 14 C 1.53000 * 109.47098 * 179.97438 * 13 10 9 15 15 C 1.50696 * 109.46897 * 180.02562 * 14 13 10 16 16 H 1.08004 * 120.00153 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00244 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99594 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00411 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47320 * 60.00109 * 19 17 15 21 21 H 1.48504 * 109.47463 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47286 * 300.00046 * 19 17 15 23 23 C 1.47164 * 117.96895 * 292.31280 * 9 7 6 24 24 C 1.51049 * 110.43100 * 83.89251 * 23 9 7 25 25 C 1.52253 * 113.59752 * 295.71351 * 24 23 9 26 26 C 1.51832 * 120.02227 * 182.01305 * 6 5 4 27 27 H 1.08999 * 109.47026 * 59.99667 * 1 2 3 28 28 H 1.08994 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46700 * 300.00129 * 1 2 3 30 30 H 1.08000 * 119.96098 * 359.38703 * 4 3 2 31 31 H 1.08002 * 120.12621 * 180.24352 * 5 4 3 32 32 H 1.07999 * 120.19313 * 359.78194 * 8 3 2 33 33 H 1.08995 * 109.47215 * 300.00576 * 13 10 9 34 34 H 1.09005 * 109.46815 * 59.99997 * 13 10 9 35 35 H 1.08995 * 109.47638 * 300.00415 * 14 13 10 36 36 H 1.09000 * 109.46582 * 60.00664 * 14 13 10 37 37 H 0.96999 * 120.00098 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.31521 * 323.59360 * 23 9 7 39 39 H 1.08998 * 109.30272 * 204.18081 * 23 9 7 40 40 H 1.08999 * 108.65467 * 174.64822 * 24 23 9 41 41 H 1.08999 * 108.66232 * 56.77625 * 24 23 9 42 42 H 1.08998 * 109.13332 * 309.10898 * 25 24 23 43 43 H 1.08999 * 109.13410 * 189.98685 * 25 24 23 44 44 H 1.08995 * 109.52043 * 7.48994 * 26 6 5 45 45 H 1.09004 * 109.51496 * 127.60624 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2886 2.3742 0.0059 5 6 1.9136 3.6080 0.0133 6 6 3.2914 3.6776 0.0156 7 6 4.0543 2.5228 -0.0051 8 6 3.4304 1.2818 -0.0005 9 7 5.4480 2.6079 -0.0555 10 16 6.3789 2.1301 1.2281 11 8 5.5805 1.1658 1.9002 12 8 7.6238 1.7718 0.6439 13 6 6.5573 3.6255 2.2393 14 6 7.4077 3.3095 3.4713 15 6 7.5554 4.5516 4.3117 16 1 7.0890 5.4741 3.9987 17 6 8.2860 4.5105 5.4803 18 7 8.8544 3.3874 5.8613 19 14 8.4685 6.0500 6.5224 20 1 7.1268 6.5172 6.9545 21 1 9.2951 5.7437 7.7175 22 1 9.1293 7.1132 5.7235 23 6 6.0633 3.1356 -1.2837 24 6 6.0867 4.6457 -1.2550 25 6 4.7011 5.2767 -1.2532 26 6 3.9838 5.0277 0.0698 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 0.2102 2.3158 0.0004 31 1 1.3252 4.5137 0.0218 32 1 4.0206 0.3773 0.0026 33 1 7.0427 4.4052 1.6525 34 1 5.5727 3.9693 2.5564 35 1 6.9219 2.5299 4.0580 36 1 8.3923 2.9655 3.1545 37 1 9.3681 3.3583 6.6836 38 1 5.4891 2.8004 -2.1474 39 1 7.0836 2.7609 -1.3653 40 1 6.6314 5.0026 -2.1290 41 1 6.6183 4.9693 -0.3601 42 1 4.1126 4.8489 -2.0648 43 1 4.7976 6.3509 -1.4108 44 1 3.2435 5.8103 0.2357 45 1 4.7081 5.0330 0.8844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089103230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:38 Heat of formation + Delta-G solvation = -114.614134 kcal Electronic energy + Delta-G solvation = -28537.890546 eV Core-core repulsion = 24646.470838 eV Total energy + Delta-G solvation = -3891.419708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48508 -39.77150 -38.37963 -37.15198 -36.91083 -35.97038 -35.15453 -33.16790 -32.09399 -31.30300 -28.24150 -27.79999 -27.54430 -25.25798 -23.94830 -23.68045 -22.11831 -21.30962 -20.22612 -19.45460 -18.78895 -18.21084 -17.54970 -17.38576 -16.95503 -16.65726 -16.60359 -16.53533 -16.21936 -15.36295 -15.25453 -14.76302 -14.74312 -14.49480 -14.45369 -14.19087 -13.90785 -13.77425 -13.60044 -13.29461 -13.23772 -13.18512 -13.04189 -12.90874 -12.84932 -12.60425 -12.29424 -12.21133 -11.99460 -11.89088 -11.79246 -11.51301 -11.47958 -11.45975 -11.19799 -10.64904 -10.52022 -9.69128 -9.01968 -8.26459 -6.41231 -0.90943 0.25574 0.43820 1.40756 1.44734 1.52215 1.53641 2.37783 2.39463 2.65755 2.71900 3.06251 3.07547 3.69106 3.82526 3.86172 3.94387 3.96046 4.10453 4.13225 4.17843 4.23464 4.33374 4.43918 4.47589 4.53790 4.65166 4.69766 4.70927 4.75233 4.83622 4.90396 5.03222 5.14009 5.21167 5.21633 5.23045 5.27497 5.32387 5.36724 5.45586 5.51522 5.65660 5.66973 5.99723 6.03500 6.46735 6.71580 7.28985 8.85854 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.003665 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.876033 B = 7638.203984 C = 7963.009256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.117 3.883 4 C -0.196 4.196 5 C -0.065 4.065 6 C -0.119 4.119 7 C 0.167 3.833 8 C -0.164 4.164 9 N -0.945 5.945 10 S 2.596 3.404 11 O -0.987 6.987 12 O -0.985 6.985 13 C -0.578 4.578 14 C 0.024 3.976 15 C -0.538 4.538 16 H 0.078 0.922 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.976 3.024 20 H -0.262 1.262 21 H -0.285 1.285 22 H -0.260 1.260 23 C 0.111 3.889 24 C -0.150 4.150 25 C -0.105 4.105 26 C -0.086 4.086 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.065 0.935 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.109 0.891 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.002 0.998 36 H 0.006 0.994 37 H 0.268 0.732 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.321 4.623 -18.245 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.071 3.929 4 C -0.214 4.214 5 C -0.083 4.083 6 C -0.123 4.123 7 C 0.073 3.927 8 C -0.186 4.186 9 N -0.776 5.776 10 S 2.697 3.303 11 O -0.977 6.977 12 O -0.976 6.976 13 C -0.710 4.710 14 C -0.015 4.015 15 C -0.576 4.576 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.799 3.201 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.185 1.185 23 C -0.011 4.011 24 C -0.189 4.189 25 C -0.142 4.142 26 C -0.123 4.123 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.084 0.916 30 H 0.179 0.821 31 H 0.185 0.815 32 H 0.127 0.873 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.020 0.980 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.707 3.428 -18.037 25.507 hybrid contribution 0.377 0.404 1.082 1.215 sum -17.330 3.832 -16.955 24.545 Atomic orbital electron populations 1.23377 0.76080 1.05544 1.02627 1.86064 1.23856 1.27024 1.88801 1.18903 0.91266 0.85510 0.97247 1.21636 1.01439 0.91283 1.07082 1.21114 0.92639 0.98335 0.96259 1.20354 0.94241 0.94839 1.02819 1.16819 0.81894 0.92285 1.01733 1.20662 0.93036 0.97779 1.07106 1.55389 1.12549 1.80314 1.29332 1.05362 0.72910 0.77783 0.74230 1.93517 1.69601 1.58925 1.75686 1.93486 1.44753 1.82939 1.76387 1.30400 1.10195 1.19211 1.11228 1.18806 0.93389 0.98238 0.91045 1.21442 1.33047 0.96323 1.06825 0.90350 1.26149 0.94793 1.00092 0.99208 1.70106 1.34470 1.28518 1.24373 0.85339 0.78755 0.78471 0.77550 1.18702 1.21018 1.18496 1.21490 0.99283 0.95172 0.85149 1.21671 0.99120 0.93956 1.04137 1.21210 0.94690 1.01656 0.96643 1.20894 0.99924 0.92518 0.98942 0.90783 0.86755 0.91610 0.82061 0.81539 0.87317 0.83573 0.84443 0.97966 0.97519 0.92364 0.88382 0.89058 0.87880 0.92373 0.91000 0.89329 0.88305 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.71 10.49 -92.44 -0.97 -9.68 16 3 C 0.12 3.11 6.68 22.50 0.15 3.26 16 4 C -0.20 -3.75 9.04 22.42 0.20 -3.55 16 5 C -0.07 -1.16 9.68 22.22 0.22 -0.95 16 6 C -0.12 -2.69 5.10 -19.53 -0.10 -2.79 16 7 C 0.17 4.86 4.91 38.09 0.19 5.04 16 8 C -0.16 -5.27 8.85 22.52 0.20 -5.07 16 9 N -0.94 -28.67 2.52 -341.51 -0.86 -29.53 16 10 S 2.60 104.37 5.44 -56.49 -0.31 104.06 16 11 O -0.99 -46.31 16.20 -127.65 -2.07 -48.37 16 12 O -0.99 -43.85 16.63 -127.65 -2.12 -45.97 16 13 C -0.58 -23.26 5.46 71.98 0.39 -22.87 16 14 C 0.02 1.31 4.98 29.85 0.15 1.45 16 15 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 16 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 17 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 18 N -0.94 -57.61 13.29 21.45 0.28 -57.32 16 19 Si 0.98 43.28 29.54 68.60 2.03 45.31 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 C 0.11 2.59 5.89 85.62 0.50 3.09 16 24 C -0.15 -2.70 5.51 29.71 0.16 -2.54 16 25 C -0.10 -1.57 5.61 30.20 0.17 -1.40 16 26 C -0.09 -1.58 5.48 30.06 0.16 -1.42 16 27 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 28 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 0.76 7.65 -2.39 -0.02 0.75 16 30 H 0.16 1.94 6.28 -2.91 -0.02 1.92 16 31 H 0.17 1.72 7.98 -2.91 -0.02 1.70 16 32 H 0.11 3.95 7.80 -2.91 -0.02 3.93 16 33 H 0.15 5.04 7.13 -2.39 -0.02 5.02 16 34 H 0.14 5.02 7.46 -2.39 -0.02 5.00 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.10 1.90 8.06 -2.39 -0.02 1.89 16 39 H 0.09 2.27 6.91 -2.39 -0.02 2.25 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.18 6.96 -2.39 -0.02 1.16 16 42 H 0.07 0.99 7.88 -2.39 -0.02 0.98 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.10 1.32 7.93 -2.39 -0.02 1.30 16 45 H 0.06 1.38 6.42 -2.38 -0.02 1.37 16 Total: -1.00 -80.43 369.88 1.18 -79.25 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.99 Total: 18.20 kcal Atomic # 6 Polarization: -60.15 SS G_CDS: 4.21 Total: -55.95 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -0.58 Total: -86.85 kcal Atomic # 8 Polarization: -98.86 SS G_CDS: -5.16 Total: -104.02 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 104.37 SS G_CDS: -0.31 Total: 104.06 kcal Total: -80.43 1.18 -79.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089103230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.366 kcal (2) G-P(sol) polarization free energy of solvation -80.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds