Wall clock time and date at job start Tue Mar 31 2020 22:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00142 * 2 1 4 4 H 1.09006 * 109.47075 * 54.99209 * 3 2 1 5 5 C 1.53001 * 109.46650 * 294.99900 * 3 2 1 6 6 O 1.42900 * 109.47319 * 294.99554 * 5 3 2 7 7 C 1.52991 * 109.47403 * 174.99778 * 3 2 1 8 8 H 1.08997 * 109.47217 * 59.99686 * 7 3 2 9 9 C 1.53004 * 109.47111 * 300.00022 * 7 3 2 10 10 N 1.46495 * 109.47366 * 179.97438 * 7 3 2 11 11 C 1.34778 * 120.00276 * 205.00058 * 10 7 3 12 12 O 1.21277 * 119.99836 * 0.02562 * 11 10 7 13 13 C 1.50703 * 120.00271 * 180.02562 * 11 10 7 14 14 C 1.50693 * 109.47218 * 180.02562 * 13 11 10 15 15 C 1.38329 * 119.96331 * 269.71980 * 14 13 11 16 16 C 1.38279 * 120.13750 * 179.76528 * 15 14 13 17 17 C 1.38122 * 120.06817 * 0.51186 * 16 15 14 18 18 C 1.38856 * 119.93103 * 359.74371 * 17 16 15 19 19 O 1.35760 * 120.06908 * 179.97438 * 18 17 16 20 20 C 1.34821 * 116.99628 * 354.49027 * 19 18 17 21 21 H 1.08003 * 120.00805 * 5.05501 * 20 19 18 22 22 C 1.38665 * 119.99615 * 185.05662 * 20 19 18 23 23 N 1.31553 * 119.99872 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99778 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47318 * 60.00581 * 24 22 20 26 26 H 1.48506 * 109.47062 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47807 * 300.00061 * 24 22 20 28 28 C 1.38078 * 119.97078 * 89.99320 * 14 13 11 29 29 H 1.09007 * 109.47495 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46876 * 60.00193 * 1 2 3 31 31 H 1.09002 * 109.47359 * 300.00255 * 1 2 3 32 32 H 1.08998 * 109.47619 * 55.00310 * 5 3 2 33 33 H 1.09001 * 109.47136 * 175.00006 * 5 3 2 34 34 H 0.96692 * 114.00254 * 180.02562 * 6 5 3 35 35 H 1.08992 * 109.47040 * 59.99448 * 9 7 3 36 36 H 1.09000 * 109.46823 * 179.97438 * 9 7 3 37 37 H 1.08997 * 109.46806 * 299.99916 * 9 7 3 38 38 H 0.96994 * 119.99966 * 25.00349 * 10 7 3 39 39 H 1.09007 * 109.46474 * 299.99928 * 13 11 10 40 40 H 1.09000 * 109.47011 * 59.99589 * 13 11 10 41 41 H 1.07994 * 119.92946 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.97116 * 180.25727 * 16 15 14 43 43 H 1.08002 * 120.03820 * 179.72537 * 17 16 15 44 44 H 0.97006 * 119.99959 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.02986 * 359.96586 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7428 2.4014 -1.3074 6 8 2.4730 1.8449 -2.4024 7 6 3.7369 1.9412 0.1258 8 1 4.2296 1.4545 -0.7160 9 6 4.2162 1.3071 1.4332 10 7 4.0665 3.3686 0.1252 11 6 5.2869 3.7783 -0.2741 12 8 6.1120 2.9652 -0.6334 13 6 5.6262 5.2466 -0.2742 14 6 7.0398 5.4355 -0.7608 15 6 8.0873 5.4356 0.1427 16 6 9.3863 5.6037 -0.3004 17 6 9.6407 5.7828 -1.6462 18 6 8.5910 5.7885 -2.5550 19 8 8.8378 5.9648 -3.8783 20 6 10.1088 6.2426 -4.2320 21 1 10.8907 6.2354 -3.4871 22 6 10.4121 6.5377 -5.5525 23 7 9.4596 6.5472 -6.4599 24 14 12.1729 6.9233 -6.0426 25 1 13.0407 5.7604 -5.7266 26 1 12.2311 7.2033 -7.4999 27 1 12.6468 8.1133 -5.2912 28 6 7.2877 5.6140 -2.1074 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 0.6797 2.2009 -1.4402 33 1 1.9076 3.4783 -1.2708 34 1 2.2212 2.2018 -3.2651 35 1 3.9709 0.2451 1.4332 36 1 5.2955 1.4305 1.5225 37 1 3.7235 1.7938 2.2749 38 1 3.4066 4.0188 0.4121 39 1 4.9408 5.7777 -0.9349 40 1 5.5341 5.6408 0.7378 41 1 7.8905 5.2998 1.1958 42 1 10.2024 5.5992 0.4068 43 1 10.6551 5.9186 -1.9912 44 1 9.6717 6.7540 -7.3836 45 1 6.4691 5.6177 -2.8119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089860624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:19 Heat of formation + Delta-G solvation = -89.190143 kcal Electronic energy + Delta-G solvation = -26673.689798 eV Core-core repulsion = 22783.372558 eV Total energy + Delta-G solvation = -3890.317241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.97851 -38.84046 -37.67560 -36.43827 -35.47728 -32.52352 -32.16977 -31.44651 -30.01124 -29.10567 -28.71579 -26.95602 -25.18288 -23.88213 -22.04302 -21.50739 -20.80210 -20.23694 -17.92804 -17.66501 -17.27734 -16.85594 -16.21298 -16.16282 -15.40430 -15.21637 -14.95258 -14.78255 -14.36819 -14.17691 -13.98237 -13.95629 -13.61606 -13.47455 -13.31370 -13.17279 -12.84598 -12.60325 -12.48977 -12.29989 -12.21855 -11.80378 -11.58546 -11.44950 -11.27311 -11.19758 -10.76775 -10.71769 -10.55366 -10.40912 -10.38635 -10.10972 -9.62287 -9.26826 -9.10527 -8.76590 -7.98593 -7.91622 -7.14022 -6.37478 -3.96248 1.19047 2.15987 2.20157 2.47351 2.85712 3.17958 3.18449 3.21544 3.30579 3.83869 4.02861 4.18327 4.38329 4.61478 4.69311 4.74291 4.86512 4.94676 4.97193 5.03657 5.15641 5.17423 5.26599 5.30429 5.32650 5.35614 5.54971 5.63686 5.72690 5.81741 5.97537 6.01106 6.11831 6.25245 6.41327 6.43394 6.73608 6.99575 7.14423 7.34270 7.36881 7.44209 7.49462 7.52142 7.90891 8.07754 8.40004 9.08311 9.79889 10.80866 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002260 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.815793 B =12388.685987 C =13347.913937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.213 6.213 3 C -0.070 4.070 4 H 0.101 0.899 5 C 0.082 3.918 6 O -0.551 6.551 7 C 0.168 3.832 8 H 0.107 0.893 9 C -0.165 4.165 10 N -0.733 5.733 11 C 0.517 3.483 12 O -0.511 6.511 13 C -0.093 4.093 14 C -0.032 4.032 15 C -0.196 4.196 16 C -0.075 4.075 17 C -0.231 4.231 18 C 0.155 3.845 19 O -0.180 6.180 20 C -0.390 4.390 21 H 0.091 0.909 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.174 4.174 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.382 0.618 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.394 0.606 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.705 -6.434 15.346 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.013 5.987 3 C -0.200 4.200 4 H 0.119 0.881 5 C 0.002 3.998 6 O -0.356 6.356 7 C 0.063 3.937 8 H 0.125 0.875 9 C -0.224 4.224 10 N -0.387 5.387 11 C 0.303 3.697 12 O -0.384 6.384 13 C -0.133 4.133 14 C -0.033 4.033 15 C -0.215 4.215 16 C -0.093 4.093 17 C -0.250 4.250 18 C 0.101 3.899 19 O -0.084 6.084 20 C -0.467 4.467 21 H 0.108 0.892 22 C -0.166 4.166 23 N -0.501 5.501 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.196 1.196 28 C -0.193 4.193 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.229 0.771 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.227 0.773 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.287 -8.230 15.093 25.099 hybrid contribution -0.685 1.883 -0.466 2.057 sum -18.972 -6.347 14.627 24.782 Atomic orbital electron populations 1.23485 0.95351 1.06596 1.04657 1.87059 1.05818 1.08162 1.97636 1.23600 1.00586 0.96286 0.99490 0.88130 1.22152 0.94142 0.96512 0.87002 1.86600 1.64290 1.67679 1.17041 1.20488 0.90514 0.82348 1.00388 0.87485 1.22269 1.02388 1.01396 0.96306 1.46065 1.15591 1.07434 1.69630 1.20710 0.81266 0.91320 0.76406 1.90771 1.47514 1.55354 1.44788 1.20586 0.96510 0.92801 1.03372 1.18644 0.92477 0.99339 0.92850 1.20342 0.92649 1.10736 0.97816 1.20674 0.95861 0.97901 0.94890 1.21169 0.99630 1.10902 0.93306 1.19277 0.92942 0.92606 0.85048 1.83976 1.30663 1.76589 1.17126 1.21267 0.82363 1.48571 0.94466 0.89199 1.25268 0.99879 0.96718 0.94690 1.70033 1.32426 1.45328 1.02280 0.85795 0.80589 0.79180 0.77931 1.19528 1.20340 1.19566 1.19931 0.94637 1.10336 0.94391 0.87929 0.90611 0.90642 0.93767 0.92652 0.77104 0.90703 0.91537 0.92610 0.77282 0.88433 0.88488 0.87986 0.87512 0.85648 0.92090 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 10.45 101.05 1.06 0.31 16 2 S -0.21 -1.94 20.10 -107.50 -2.16 -4.10 16 3 C -0.07 -0.57 2.28 -26.73 -0.06 -0.63 16 4 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 5 C 0.08 0.62 6.35 37.16 0.24 0.85 16 6 O -0.55 -5.64 12.53 -35.23 -0.44 -6.08 16 7 C 0.17 1.84 1.96 -67.94 -0.13 1.70 16 8 H 0.11 1.62 6.99 -51.93 -0.36 1.26 16 9 C -0.17 -1.72 9.25 37.16 0.34 -1.38 16 10 N -0.73 -7.50 4.46 -53.81 -0.24 -7.74 16 11 C 0.52 7.53 7.79 -10.98 -0.09 7.44 16 12 O -0.51 -10.23 15.70 5.56 0.09 -10.14 16 13 C -0.09 -1.23 5.83 -29.04 -0.17 -1.40 16 14 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 15 C -0.20 -3.63 9.70 -39.53 -0.38 -4.01 16 16 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 17 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 18 C 0.15 3.94 6.65 -39.11 -0.26 3.68 16 19 O -0.18 -5.34 9.76 0.04 0.00 -5.34 16 20 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 21 H 0.09 2.41 5.20 -52.48 -0.27 2.13 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.87 -25.99 13.67 55.48 0.76 -25.24 16 24 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 28 C -0.17 -3.88 9.64 -39.40 -0.38 -4.26 16 29 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.07 0.39 7.02 -51.92 -0.36 0.02 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.04 0.26 6.72 -51.93 -0.35 -0.09 16 33 H 0.06 0.36 7.61 -51.93 -0.40 -0.04 16 34 H 0.38 2.51 9.12 45.56 0.42 2.93 16 35 H 0.07 0.77 6.91 -51.93 -0.36 0.41 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.39 2.60 8.40 -40.82 -0.34 2.26 16 39 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 40 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -37.00 388.52 -7.70 -44.71 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.68 Total: 8.31 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -0.86 Total: -16.31 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.52 Total: -32.97 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.35 Total: -21.56 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -2.16 Total: -4.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.00 -7.70 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089860624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.483 kcal (2) G-P(sol) polarization free energy of solvation -37.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds