Wall clock time and date at job start Tue Mar 31 2020 22:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00142 * 2 1 4 4 H 1.09006 * 109.47075 * 54.99209 * 3 2 1 5 5 C 1.53001 * 109.46650 * 294.99900 * 3 2 1 6 6 O 1.42900 * 109.47319 * 294.99554 * 5 3 2 7 7 C 1.52991 * 109.47403 * 174.99778 * 3 2 1 8 8 H 1.08997 * 109.47217 * 59.99686 * 7 3 2 9 9 C 1.53004 * 109.47111 * 300.00022 * 7 3 2 10 10 N 1.46495 * 109.47366 * 179.97438 * 7 3 2 11 11 C 1.34778 * 120.00276 * 205.00058 * 10 7 3 12 12 O 1.21277 * 119.99836 * 0.02562 * 11 10 7 13 13 C 1.50703 * 120.00271 * 180.02562 * 11 10 7 14 14 C 1.50693 * 109.47218 * 180.02562 * 13 11 10 15 15 C 1.38329 * 119.96331 * 269.71980 * 14 13 11 16 16 C 1.38279 * 120.13750 * 179.76528 * 15 14 13 17 17 C 1.38122 * 120.06817 * 0.51186 * 16 15 14 18 18 C 1.38856 * 119.93103 * 359.74371 * 17 16 15 19 19 O 1.35760 * 120.06908 * 179.97438 * 18 17 16 20 20 C 1.34821 * 116.99628 * 354.49027 * 19 18 17 21 21 H 1.08003 * 120.00805 * 5.05501 * 20 19 18 22 22 C 1.38665 * 119.99615 * 185.05662 * 20 19 18 23 23 N 1.31553 * 119.99872 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99778 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47318 * 60.00581 * 24 22 20 26 26 H 1.48506 * 109.47062 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47807 * 300.00061 * 24 22 20 28 28 C 1.38078 * 119.97078 * 89.99320 * 14 13 11 29 29 H 1.09007 * 109.47495 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46876 * 60.00193 * 1 2 3 31 31 H 1.09002 * 109.47359 * 300.00255 * 1 2 3 32 32 H 1.08998 * 109.47619 * 55.00310 * 5 3 2 33 33 H 1.09001 * 109.47136 * 175.00006 * 5 3 2 34 34 H 0.96692 * 114.00254 * 180.02562 * 6 5 3 35 35 H 1.08992 * 109.47040 * 59.99448 * 9 7 3 36 36 H 1.09000 * 109.46823 * 179.97438 * 9 7 3 37 37 H 1.08997 * 109.46806 * 299.99916 * 9 7 3 38 38 H 0.96994 * 119.99966 * 25.00349 * 10 7 3 39 39 H 1.09007 * 109.46474 * 299.99928 * 13 11 10 40 40 H 1.09000 * 109.47011 * 59.99589 * 13 11 10 41 41 H 1.07994 * 119.92946 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.97116 * 180.25727 * 16 15 14 43 43 H 1.08002 * 120.03820 * 179.72537 * 17 16 15 44 44 H 0.97006 * 119.99959 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.02986 * 359.96586 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7428 2.4014 -1.3074 6 8 2.4730 1.8449 -2.4024 7 6 3.7369 1.9412 0.1258 8 1 4.2296 1.4545 -0.7160 9 6 4.2162 1.3071 1.4332 10 7 4.0665 3.3686 0.1252 11 6 5.2869 3.7783 -0.2741 12 8 6.1120 2.9652 -0.6334 13 6 5.6262 5.2466 -0.2742 14 6 7.0398 5.4355 -0.7608 15 6 8.0873 5.4356 0.1427 16 6 9.3863 5.6037 -0.3004 17 6 9.6407 5.7828 -1.6462 18 6 8.5910 5.7885 -2.5550 19 8 8.8378 5.9648 -3.8783 20 6 10.1088 6.2426 -4.2320 21 1 10.8907 6.2354 -3.4871 22 6 10.4121 6.5377 -5.5525 23 7 9.4596 6.5472 -6.4599 24 14 12.1729 6.9233 -6.0426 25 1 13.0407 5.7604 -5.7266 26 1 12.2311 7.2033 -7.4999 27 1 12.6468 8.1133 -5.2912 28 6 7.2877 5.6140 -2.1074 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 0.6797 2.2009 -1.4402 33 1 1.9076 3.4783 -1.2708 34 1 2.2212 2.2018 -3.2651 35 1 3.9709 0.2451 1.4332 36 1 5.2955 1.4305 1.5225 37 1 3.7235 1.7938 2.2749 38 1 3.4066 4.0188 0.4121 39 1 4.9408 5.7777 -0.9349 40 1 5.5341 5.6408 0.7378 41 1 7.8905 5.2998 1.1958 42 1 10.2024 5.5992 0.4068 43 1 10.6551 5.9186 -1.9912 44 1 9.6717 6.7540 -7.3836 45 1 6.4691 5.6177 -2.8119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089860624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:18 Heat of formation + Delta-G solvation = -117.573961 kcal Electronic energy + Delta-G solvation = -26674.920613 eV Core-core repulsion = 22783.372558 eV Total energy + Delta-G solvation = -3891.548055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20888 -40.49575 -38.66222 -38.03491 -36.44566 -34.34187 -33.69068 -32.57446 -30.89665 -30.63099 -29.26790 -28.37180 -27.22655 -24.65574 -23.37423 -23.05323 -21.99472 -21.48449 -19.50630 -18.81323 -18.65842 -18.20427 -17.15890 -16.97395 -16.77400 -16.58788 -16.10554 -15.97151 -15.80177 -15.52058 -15.45563 -15.16525 -14.73812 -14.45997 -14.31149 -14.15113 -14.02113 -13.90292 -13.59732 -13.55647 -13.25702 -12.99295 -12.93602 -12.73334 -12.45413 -12.38554 -12.33803 -12.21213 -12.12270 -12.09560 -11.20263 -11.03787 -10.93412 -10.78751 -10.64838 -10.10192 -9.62192 -8.96735 -8.59339 -8.46543 -6.14995 0.49045 0.62697 0.77347 1.33700 1.45211 1.50408 1.64495 1.73514 2.18114 2.30344 2.86327 3.19164 3.24817 3.45445 3.50871 3.75999 3.82339 4.11153 4.12974 4.21115 4.29447 4.32823 4.36833 4.38065 4.46770 4.49325 4.51115 4.59490 4.59778 4.65975 4.74872 4.78466 4.93360 5.04017 5.10495 5.13674 5.25363 5.32201 5.49975 5.66223 5.73852 5.76570 6.03350 6.24960 6.61087 6.84995 6.97834 7.37118 7.79761 8.76891 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002260 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.815793 B =12388.685987 C =13347.913937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.280 6.280 3 C -0.056 4.056 4 H 0.135 0.865 5 C 0.076 3.924 6 O -0.583 6.583 7 C 0.171 3.829 8 H 0.058 0.942 9 C -0.157 4.157 10 N -0.707 5.707 11 C 0.517 3.483 12 O -0.577 6.577 13 C -0.089 4.089 14 C -0.025 4.025 15 C -0.181 4.181 16 C -0.075 4.075 17 C -0.248 4.248 18 C 0.111 3.889 19 O -0.234 6.234 20 C -0.415 4.415 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.020 2.980 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.255 1.255 28 C -0.192 4.192 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.393 0.607 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.417 0.583 39 H 0.123 0.877 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.117 0.883 44 H 0.273 0.727 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.439 -5.526 18.919 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.054 6.054 3 C -0.185 4.185 4 H 0.153 0.847 5 C -0.003 4.003 6 O -0.391 6.391 7 C 0.065 3.935 8 H 0.076 0.924 9 C -0.216 4.216 10 N -0.362 5.362 11 C 0.305 3.695 12 O -0.455 6.455 13 C -0.128 4.128 14 C -0.026 4.026 15 C -0.199 4.199 16 C -0.093 4.093 17 C -0.267 4.267 18 C 0.061 3.939 19 O -0.141 6.141 20 C -0.491 4.491 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.839 3.161 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.179 1.179 28 C -0.211 4.211 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.242 0.758 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.255 0.745 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.135 0.865 44 H 0.082 0.918 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.100 -7.303 18.742 28.436 hybrid contribution -0.375 1.499 -1.281 2.007 sum -20.475 -5.804 17.462 27.528 Atomic orbital electron populations 1.23511 0.91486 1.07444 1.05935 1.87345 1.10119 1.10157 1.97820 1.23562 0.98287 0.95436 1.01179 0.84743 1.22364 0.95015 0.97068 0.85884 1.86581 1.65419 1.68639 1.18466 1.20317 0.92387 0.82001 0.98775 0.92397 1.22179 1.00802 1.01660 0.96939 1.45764 1.14721 1.07866 1.67809 1.20919 0.81709 0.91328 0.75573 1.90770 1.49765 1.56967 1.47986 1.20704 0.93325 0.92267 1.06517 1.19207 0.95901 0.96356 0.91127 1.20982 0.91821 1.07088 1.00023 1.21135 0.98002 0.96339 0.93812 1.21293 0.98705 1.11913 0.94802 1.19896 0.95068 0.94523 0.84451 1.83934 1.31182 1.79420 1.19590 1.21784 0.82826 1.49108 0.95384 0.88317 1.26618 1.05187 0.96173 0.94192 1.70185 1.35286 1.47770 1.02805 0.84642 0.74043 0.79583 0.77878 1.18423 1.19415 1.17932 1.20221 0.93392 1.11140 0.96390 0.87358 0.89885 0.88686 0.91629 0.91154 0.75807 0.91014 0.94204 0.89834 0.74488 0.85935 0.83618 0.83471 0.83773 0.86519 0.91846 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.45 113.37 1.18 0.20 16 2 S -0.28 -4.79 20.10 -56.49 -1.14 -5.93 16 3 C -0.06 -0.76 2.28 30.59 0.07 -0.69 16 4 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 5 C 0.08 0.96 6.35 71.98 0.46 1.42 16 6 O -0.58 -11.84 12.53 -148.98 -1.87 -13.71 16 7 C 0.17 3.54 1.96 44.99 0.09 3.63 16 8 H 0.06 1.83 6.99 -2.39 -0.02 1.82 16 9 C -0.16 -3.09 9.25 71.98 0.67 -2.43 16 10 N -0.71 -12.50 4.46 -442.55 -1.97 -14.47 16 11 C 0.52 14.03 7.79 87.66 0.68 14.71 16 12 O -0.58 -23.24 15.70 -3.02 -0.05 -23.29 16 13 C -0.09 -2.02 5.83 29.10 0.17 -1.85 16 14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 15 C -0.18 -6.06 9.70 22.30 0.22 -5.84 16 16 C -0.07 -2.81 10.04 22.25 0.22 -2.58 16 17 C -0.25 -11.72 9.17 22.39 0.21 -11.52 16 18 C 0.11 5.95 6.65 22.58 0.15 6.10 16 19 O -0.23 -14.96 9.76 -22.76 -0.22 -15.18 16 20 C -0.41 -25.43 9.49 67.92 0.64 -24.79 16 21 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 22 C -0.02 -1.46 5.49 84.84 0.47 -0.99 16 23 N -0.92 -58.57 13.67 21.62 0.30 -58.27 16 24 Si 1.02 44.58 29.55 68.60 2.03 46.61 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 28 C -0.19 -8.83 9.64 22.39 0.22 -8.61 16 29 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.60 7.02 -2.39 -0.02 0.59 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.56 6.72 -2.39 -0.02 0.55 16 33 H 0.07 0.67 7.61 -2.39 -0.02 0.65 16 34 H 0.39 5.21 9.12 -74.06 -0.68 4.53 16 35 H 0.07 1.46 6.91 -2.39 -0.02 1.44 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.42 3.54 8.40 -92.71 -0.78 2.76 16 39 H 0.12 2.25 8.08 -2.38 -0.02 2.23 16 40 H 0.15 1.97 8.08 -2.39 -0.02 1.95 16 41 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 42 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 43 H 0.12 5.57 5.64 -2.91 -0.02 5.56 16 44 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 45 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -91.07 388.52 2.00 -89.07 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.43 Total: 29.39 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 5.35 Total: -34.22 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.68 Total: -72.74 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -2.14 Total: -52.18 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -1.14 Total: -5.93 kcal Total: -91.07 2.00 -89.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089860624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.506 kcal (2) G-P(sol) polarization free energy of solvation -91.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds