Wall clock time and date at job start Tue Mar 31 2020 22:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81394 * 103.00036 * 2 1 4 4 H 1.08998 * 109.47729 * 54.99844 * 3 2 1 5 5 C 1.53005 * 109.46924 * 294.99837 * 3 2 1 6 6 O 1.42900 * 109.47177 * 294.99812 * 5 3 2 7 7 C 1.52997 * 109.47221 * 175.00021 * 3 2 1 8 8 H 1.09002 * 109.47351 * 184.99435 * 7 3 2 9 9 C 1.52997 * 109.47365 * 304.99981 * 7 3 2 10 10 N 1.46505 * 109.47007 * 64.99963 * 7 3 2 11 11 C 1.34780 * 120.00023 * 155.00262 * 10 7 3 12 12 O 1.21286 * 119.99794 * 359.97438 * 11 10 7 13 13 C 1.50695 * 119.99817 * 179.97438 * 11 10 7 14 14 C 1.50698 * 109.47041 * 179.97438 * 13 11 10 15 15 C 1.38325 * 119.96709 * 269.72499 * 14 13 11 16 16 C 1.38278 * 120.13880 * 179.76572 * 15 14 13 17 17 C 1.38119 * 120.07204 * 0.50765 * 16 15 14 18 18 C 1.38860 * 119.92777 * 359.74987 * 17 16 15 19 19 O 1.35750 * 120.06792 * 179.97438 * 18 17 16 20 20 C 1.34821 * 117.00121 * 354.49027 * 19 18 17 21 21 H 1.07996 * 120.00246 * 5.05689 * 20 19 18 22 22 C 1.38659 * 120.00197 * 185.05563 * 20 19 18 23 23 N 1.31557 * 119.99464 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00156 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47161 * 60.00299 * 24 22 20 26 26 H 1.48504 * 109.47181 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47416 * 300.00190 * 24 22 20 28 28 C 1.38081 * 119.96778 * 90.00176 * 14 13 11 29 29 H 1.09004 * 109.47020 * 300.00479 * 1 2 3 30 30 H 1.08997 * 109.47195 * 60.00322 * 1 2 3 31 31 H 1.08999 * 109.47681 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46898 * 175.00164 * 5 3 2 33 33 H 1.08995 * 109.47390 * 55.00558 * 5 3 2 34 34 H 0.96703 * 113.99958 * 179.97438 * 6 5 3 35 35 H 1.09006 * 109.46621 * 300.00006 * 9 7 3 36 36 H 1.09002 * 109.47332 * 59.99442 * 9 7 3 37 37 H 1.08994 * 109.47451 * 179.97438 * 9 7 3 38 38 H 0.97001 * 119.99955 * 334.99952 * 10 7 3 39 39 H 1.08999 * 109.47787 * 300.00185 * 13 11 10 40 40 H 1.09007 * 109.47147 * 60.00442 * 13 11 10 41 41 H 1.08002 * 119.93082 * 359.97438 * 15 14 13 42 42 H 1.07999 * 119.96290 * 180.26026 * 16 15 14 43 43 H 1.07993 * 120.03765 * 179.71967 * 17 16 15 44 44 H 0.97004 * 119.99336 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.02904 * 359.95572 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2542 0.8417 5 6 1.7428 2.4015 -1.3074 6 8 2.4730 1.8449 -2.4025 7 6 3.7369 1.9411 0.1257 8 1 3.9750 3.0011 0.2150 9 6 4.2338 1.2004 1.3687 10 7 4.3918 1.3921 -1.0643 11 6 5.6047 1.8471 -1.4364 12 8 6.1538 2.7113 -0.7862 13 6 6.2786 1.2820 -2.6601 14 6 7.6125 1.9555 -2.8551 15 6 7.7021 3.1011 -3.6251 16 6 8.9235 3.7247 -3.8025 17 6 10.0600 3.1991 -3.2195 18 6 9.9743 2.0462 -2.4504 19 8 11.0895 1.5270 -1.8765 20 6 12.2650 2.1111 -2.1845 21 1 12.2818 3.0021 -2.7945 22 6 13.4524 1.5679 -1.7180 23 7 13.4319 0.4822 -0.9753 24 14 15.0810 2.3767 -2.1453 25 1 15.0943 3.7677 -1.6255 26 1 16.1923 1.6073 -1.5303 27 1 15.2513 2.3979 -3.6204 28 6 8.7451 1.4251 -2.2697 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.9076 3.4784 -1.2708 33 1 0.6797 2.2010 -1.4402 34 1 2.2206 2.2014 -3.2652 35 1 3.7465 1.6089 2.2541 36 1 3.9958 0.1404 1.2795 37 1 5.3131 1.3237 1.4581 38 1 3.9525 0.7012 -1.5844 39 1 6.4278 0.2101 -2.5304 40 1 5.6517 1.4584 -3.5342 41 1 6.8157 3.5113 -4.0860 42 1 8.9894 4.6213 -4.4008 43 1 11.0143 3.6841 -3.3621 44 1 14.2627 0.1020 -0.6493 45 1 8.6751 0.5285 -1.6718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089860625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:23 Heat of formation + Delta-G solvation = -82.024942 kcal Electronic energy + Delta-G solvation = -26897.523682 eV Core-core repulsion = 23007.517147 eV Total energy + Delta-G solvation = -3890.006534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.85343 -38.80067 -37.70945 -36.37338 -35.32647 -32.44045 -32.13683 -31.45373 -29.90560 -29.04191 -28.69582 -26.84431 -25.13849 -23.87923 -21.98283 -21.44478 -20.77850 -20.05901 -17.99326 -17.59217 -17.17386 -16.72872 -16.65482 -15.54474 -15.33548 -15.12195 -15.02610 -14.76708 -14.33161 -14.15675 -14.08763 -13.74946 -13.62121 -13.42472 -13.27014 -13.10067 -12.99386 -12.55937 -12.38123 -12.27129 -12.01023 -11.89374 -11.65011 -11.36190 -11.15858 -11.12902 -10.72024 -10.66670 -10.59491 -10.49796 -10.37523 -10.08466 -9.48082 -9.22319 -8.78019 -8.73159 -7.96749 -7.91893 -7.08869 -6.33948 -3.92731 1.21026 2.14372 2.24663 2.52691 3.03147 3.19772 3.20799 3.23547 3.40184 3.72441 4.05649 4.19062 4.46828 4.66789 4.71195 4.72298 4.88493 4.91616 4.98686 5.10029 5.22049 5.22535 5.24848 5.30546 5.34485 5.47474 5.65238 5.70522 5.83395 5.89356 5.92990 6.06448 6.22200 6.30815 6.47353 6.69900 6.79928 7.05518 7.18753 7.21550 7.41545 7.49318 7.56466 7.84662 7.97638 8.11461 8.61922 9.11764 9.84317 10.84491 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.002227 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.935178 B =12570.563771 C =13254.152581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.221 6.221 3 C -0.072 4.072 4 H 0.109 0.891 5 C 0.085 3.915 6 O -0.551 6.551 7 C 0.170 3.830 8 H 0.095 0.905 9 C -0.168 4.168 10 N -0.709 5.709 11 C 0.516 3.484 12 O -0.532 6.532 13 C -0.092 4.092 14 C -0.029 4.029 15 C -0.196 4.196 16 C -0.076 4.076 17 C -0.232 4.232 18 C 0.155 3.845 19 O -0.180 6.180 20 C -0.390 4.390 21 H 0.090 0.910 22 C 0.038 3.962 23 N -0.866 5.866 24 Si 0.940 3.060 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.271 1.271 28 C -0.175 4.175 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.378 0.622 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.410 0.590 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.269 0.731 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.355 1.459 -1.275 28.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.005 5.995 3 C -0.201 4.201 4 H 0.128 0.872 5 C 0.004 3.996 6 O -0.357 6.357 7 C 0.063 3.937 8 H 0.112 0.888 9 C -0.227 4.227 10 N -0.366 5.366 11 C 0.303 3.697 12 O -0.407 6.407 13 C -0.132 4.132 14 C -0.029 4.029 15 C -0.215 4.215 16 C -0.094 4.094 17 C -0.252 4.252 18 C 0.102 3.898 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.108 0.892 22 C -0.166 4.166 23 N -0.501 5.501 24 Si 0.765 3.235 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.196 1.196 28 C -0.194 4.194 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.079 0.921 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.797 0.519 -0.039 26.802 hybrid contribution -0.688 1.575 -0.830 1.908 sum -27.485 2.094 -0.869 27.578 Atomic orbital electron populations 1.23483 0.95548 1.06528 1.04593 1.87078 1.05798 1.09126 1.97535 1.23806 1.00616 0.95833 0.99859 0.87244 1.22154 0.94141 0.96617 0.86641 1.86503 1.64161 1.67960 1.17057 1.20489 0.86726 0.99817 0.86651 0.88756 1.22269 1.02674 1.01329 0.96433 1.46073 1.19076 1.43114 1.28297 1.20651 0.80728 0.82222 0.86122 1.90734 1.64000 1.31176 1.54796 1.20543 0.94969 1.01110 0.96545 1.18700 0.91965 0.95257 0.97003 1.20331 0.96919 0.98384 1.05886 1.20661 0.92509 0.98129 0.98128 1.21149 0.99218 0.99554 1.05260 1.19283 0.88231 0.91521 0.90806 1.83976 1.12250 1.52837 1.59372 1.21258 0.81054 1.10466 1.33847 0.89239 1.25265 0.98778 0.96147 0.96410 1.70040 1.28126 1.19554 1.32379 0.85799 0.79979 0.78871 0.78856 1.19580 1.20362 1.19581 1.19958 0.90390 1.02687 1.06357 0.90651 0.90720 0.88050 0.92590 0.93661 0.77449 0.91860 0.91191 0.91298 0.75120 0.88581 0.88511 0.88061 0.87626 0.85727 0.92122 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 10.45 101.05 1.06 0.40 16 2 S -0.22 -1.75 19.01 -107.50 -2.04 -3.80 16 3 C -0.07 -0.52 2.64 -26.73 -0.07 -0.59 16 4 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 5 C 0.08 0.50 6.58 37.16 0.24 0.74 16 6 O -0.55 -3.62 9.95 -35.23 -0.35 -3.97 16 7 C 0.17 1.79 2.38 -67.93 -0.16 1.62 16 8 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 9 C -0.17 -1.86 9.17 37.16 0.34 -1.52 16 10 N -0.71 -8.32 3.47 -53.80 -0.19 -8.51 16 11 C 0.52 8.02 7.79 -10.99 -0.09 7.93 16 12 O -0.53 -10.73 15.70 5.55 0.09 -10.64 16 13 C -0.09 -1.34 5.83 -29.04 -0.17 -1.51 16 14 C -0.03 -0.55 4.37 -104.65 -0.46 -1.01 16 15 C -0.20 -3.71 9.70 -39.53 -0.38 -4.09 16 16 C -0.08 -1.52 10.04 -39.61 -0.40 -1.92 16 17 C -0.23 -5.45 9.17 -39.39 -0.36 -5.81 16 18 C 0.15 4.02 6.65 -39.11 -0.26 3.76 16 19 O -0.18 -5.44 9.76 0.07 0.00 -5.44 16 20 C -0.39 -11.40 9.49 30.89 0.29 -11.11 16 21 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.87 -26.31 13.67 55.48 0.76 -25.56 16 24 Si 0.94 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 28 C -0.17 -4.02 9.65 -39.39 -0.38 -4.40 16 29 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.07 0.31 7.02 -51.93 -0.36 -0.05 16 31 H 0.10 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.20 6.72 -51.93 -0.35 -0.15 16 34 H 0.38 1.15 9.12 45.56 0.42 1.56 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.77 6.72 -51.93 -0.35 0.42 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.41 4.33 6.18 -40.82 -0.25 4.08 16 39 H 0.10 1.27 8.08 -51.93 -0.42 0.85 16 40 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.11 2.55 8.06 -52.49 -0.42 2.12 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -36.25 383.50 -7.51 -43.76 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.64 Total: 8.60 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -0.89 Total: -16.52 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.57 Total: -34.06 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.26 Total: -20.05 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.04 Total: -3.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.25 -7.51 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089860625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.268 kcal (2) G-P(sol) polarization free energy of solvation -36.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds