Wall clock time and date at job start Tue Mar 31 2020 22:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81407 * 103.00087 * 2 1 4 4 H 1.08998 * 109.46677 * 304.99899 * 3 2 1 5 5 C 1.53000 * 109.47013 * 64.99769 * 3 2 1 6 6 O 1.42897 * 109.47022 * 175.00092 * 5 3 2 7 7 C 1.53001 * 109.46829 * 184.99915 * 3 2 1 8 8 H 1.08993 * 109.47115 * 304.99701 * 7 3 2 9 9 C 1.52996 * 109.46958 * 65.00355 * 7 3 2 10 10 N 1.46503 * 109.46391 * 184.99746 * 7 3 2 11 11 C 1.34783 * 119.99585 * 155.00061 * 10 7 3 12 12 O 1.21284 * 119.99976 * 0.02562 * 11 10 7 13 13 C 1.50699 * 120.00059 * 179.97438 * 11 10 7 14 14 C 1.50699 * 109.47151 * 180.02562 * 13 11 10 15 15 C 1.38328 * 119.96224 * 270.02423 * 14 13 11 16 16 C 1.38279 * 120.13490 * 179.97438 * 15 14 13 17 17 C 1.38120 * 120.06774 * 359.77134 * 16 15 14 18 18 C 1.38852 * 119.93464 * 0.50144 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.74702 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46814 * 90.00164 * 24 22 20 26 26 H 1.48501 * 109.47378 * 210.00272 * 24 22 20 27 27 H 1.48503 * 109.47143 * 330.00397 * 24 22 20 28 28 C 1.38073 * 119.96539 * 89.99818 * 14 13 11 29 29 H 1.09004 * 109.47157 * 300.00228 * 1 2 3 30 30 H 1.08995 * 109.46891 * 59.99751 * 1 2 3 31 31 H 1.08993 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47290 * 295.00388 * 5 3 2 33 33 H 1.09005 * 109.47089 * 55.00298 * 5 3 2 34 34 H 0.96703 * 114.00097 * 180.02562 * 6 5 3 35 35 H 1.08997 * 109.46848 * 179.97438 * 9 7 3 36 36 H 1.09006 * 109.47226 * 299.99460 * 9 7 3 37 37 H 1.09001 * 109.47900 * 59.99399 * 9 7 3 38 38 H 0.97001 * 120.00603 * 335.00491 * 10 7 3 39 39 H 1.09004 * 109.46756 * 60.00007 * 13 11 10 40 40 H 1.08998 * 109.46908 * 300.00650 * 13 11 10 41 41 H 1.08001 * 119.93314 * 359.97438 * 15 14 13 42 42 H 1.07999 * 119.96467 * 180.02562 * 16 15 14 43 43 H 1.08006 * 120.03757 * 180.27571 * 17 16 15 44 44 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.03547 * 0.04988 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 8 2.1661 3.7655 1.3585 7 6 3.7370 1.9411 -0.1257 8 1 4.2339 1.3804 0.6659 9 6 4.1989 1.4191 -1.4877 10 7 4.0773 3.3611 -0.0060 11 6 5.3045 3.7267 0.4147 12 8 6.1272 2.8803 0.6936 13 6 5.6548 5.1873 0.5373 14 6 7.0749 5.3242 1.0229 15 6 7.3384 5.3842 2.3795 16 6 8.6401 5.5093 2.8289 17 6 9.6818 5.5700 1.9241 18 6 9.4201 5.5158 0.5615 19 8 10.4415 5.5804 -0.3304 20 6 11.6727 5.8179 0.1650 21 1 11.8249 5.8661 1.2331 22 6 12.7435 6.0001 -0.6968 23 7 12.5580 5.9419 -1.9979 24 14 14.4492 6.3299 -0.0104 25 1 15.1567 5.0409 0.1978 26 1 15.2155 7.1660 -0.9690 27 1 14.3315 7.0449 1.2859 28 6 8.1115 5.3891 0.1132 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.6548 2.3568 1.3554 33 1 2.1665 1.8578 2.1517 34 1 1.8969 4.2310 2.1622 35 1 5.2780 1.5432 -1.5774 36 1 3.9456 0.3627 -1.5768 37 1 3.7019 1.9799 -2.2794 38 1 3.4195 4.0380 -0.2293 39 1 4.9798 5.6644 1.2479 40 1 5.5561 5.6676 -0.4362 41 1 6.5258 5.3333 3.0891 42 1 8.8427 5.5555 3.8888 43 1 10.6987 5.6633 2.2758 44 1 13.3070 6.0698 -2.6008 45 1 7.9051 5.3426 -0.9459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089860627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:31 Heat of formation + Delta-G solvation = -85.130446 kcal Electronic energy + Delta-G solvation = -26726.775148 eV Core-core repulsion = 22836.633949 eV Total energy + Delta-G solvation = -3890.141199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.89133 -38.81874 -37.74808 -36.39504 -35.36076 -32.47992 -32.15734 -31.48102 -29.98432 -29.07160 -28.74072 -26.87600 -25.15370 -23.89916 -22.02079 -21.46462 -20.78254 -20.11887 -18.17470 -17.56662 -16.98218 -16.76335 -16.54483 -16.07094 -15.45729 -15.13556 -14.92926 -14.80308 -14.35306 -14.17472 -14.13841 -13.92730 -13.68382 -13.36104 -13.32962 -13.04195 -12.93316 -12.56618 -12.49329 -12.27970 -12.14368 -11.77050 -11.56312 -11.35052 -11.21889 -11.18256 -10.73066 -10.68956 -10.63544 -10.51183 -10.37327 -10.33829 -9.51225 -9.23458 -8.85525 -8.74718 -8.17747 -7.94016 -7.10472 -6.35227 -3.93951 1.02579 1.97945 2.23187 2.51007 2.99234 3.19016 3.19384 3.24365 3.48652 3.79870 4.04634 4.06779 4.51611 4.60357 4.64734 4.67972 4.70834 4.88858 5.06150 5.09755 5.20079 5.21235 5.25327 5.29246 5.36587 5.45366 5.62915 5.71460 5.80369 5.86938 5.92151 6.04775 6.18463 6.29138 6.45411 6.62934 6.77935 7.03600 7.13833 7.17679 7.39305 7.47824 7.54874 7.76075 7.95298 8.10234 8.56536 9.10658 9.82878 10.83251 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.002138 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.510759 B =13094.727511 C =13774.286933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.214 6.214 3 C -0.073 4.073 4 H 0.098 0.902 5 C 0.085 3.915 6 O -0.562 6.562 7 C 0.170 3.830 8 H 0.092 0.908 9 C -0.167 4.167 10 N -0.710 5.710 11 C 0.517 3.483 12 O -0.527 6.527 13 C -0.091 4.091 14 C -0.030 4.030 15 C -0.196 4.196 16 C -0.076 4.076 17 C -0.232 4.232 18 C 0.154 3.846 19 O -0.181 6.181 20 C -0.389 4.389 21 H 0.091 0.909 22 C 0.037 3.963 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.175 4.175 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.380 0.620 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.404 0.596 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.268 0.732 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.178 -6.196 5.428 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.012 5.988 3 C -0.202 4.202 4 H 0.116 0.884 5 C 0.005 3.995 6 O -0.369 6.369 7 C 0.064 3.936 8 H 0.110 0.890 9 C -0.225 4.225 10 N -0.366 5.366 11 C 0.303 3.697 12 O -0.401 6.401 13 C -0.131 4.131 14 C -0.031 4.031 15 C -0.215 4.215 16 C -0.094 4.094 17 C -0.251 4.251 18 C 0.101 3.899 19 O -0.085 6.085 20 C -0.466 4.466 21 H 0.108 0.892 22 C -0.166 4.166 23 N -0.501 5.501 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.193 1.193 28 C -0.194 4.194 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.229 0.771 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.242 0.758 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.078 0.922 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -25.502 -7.852 4.581 27.074 hybrid contribution -0.688 1.545 0.836 1.887 sum -26.190 -6.307 5.417 27.478 Atomic orbital electron populations 1.23497 0.94700 1.06817 1.05050 1.87148 1.06572 1.07434 1.97656 1.23574 1.00762 0.95029 1.00843 0.88364 1.22441 0.97263 0.83424 0.96398 1.86420 1.80739 1.23544 1.46150 1.20406 0.89790 0.84007 0.99372 0.89018 1.22281 1.02833 1.01574 0.95855 1.45970 1.14638 1.06788 1.69177 1.20663 0.81321 0.91462 0.76225 1.90749 1.48305 1.52862 1.48228 1.20545 0.95825 0.93250 1.03457 1.18690 0.92076 0.99098 0.93217 1.20334 0.96113 1.10914 0.94106 1.20668 0.92578 0.98116 0.98057 1.21156 0.99695 1.11257 0.92983 1.19283 0.88881 0.92609 0.89094 1.83977 1.14511 1.77620 1.32344 1.21309 0.81786 1.50165 0.93316 0.89171 1.25267 0.99442 0.96819 0.95093 1.70042 1.32071 1.46252 1.01713 0.85727 0.80574 0.78626 0.78566 1.19949 1.20341 1.19255 1.19952 0.89940 1.10571 0.98928 0.90456 0.90258 0.87736 0.93696 0.92187 0.77109 0.91247 0.90889 0.92465 0.75827 0.88481 0.88585 0.88038 0.87587 0.85700 0.92169 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.59 10.47 101.05 1.06 0.47 16 2 S -0.21 -1.67 20.60 -107.50 -2.21 -3.89 16 3 C -0.07 -0.56 2.35 -26.73 -0.06 -0.62 16 4 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 5 C 0.08 0.54 6.38 37.16 0.24 0.78 16 6 O -0.56 -3.50 10.20 -35.23 -0.36 -3.86 16 7 C 0.17 1.86 2.15 -67.93 -0.15 1.71 16 8 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 9 C -0.17 -1.87 9.31 37.16 0.35 -1.52 16 10 N -0.71 -7.97 3.54 -53.81 -0.19 -8.16 16 11 C 0.52 7.88 7.79 -10.98 -0.09 7.80 16 12 O -0.53 -10.68 15.70 5.55 0.09 -10.59 16 13 C -0.09 -1.28 5.83 -29.04 -0.17 -1.45 16 14 C -0.03 -0.58 4.37 -104.65 -0.46 -1.03 16 15 C -0.20 -3.67 9.70 -39.53 -0.38 -4.05 16 16 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 16 17 C -0.23 -5.41 9.17 -39.40 -0.36 -5.77 16 18 C 0.15 3.99 6.65 -39.11 -0.26 3.73 16 19 O -0.18 -5.42 9.76 0.05 0.00 -5.42 16 20 C -0.39 -11.35 9.49 30.89 0.29 -11.05 16 21 H 0.09 2.44 5.21 -52.49 -0.27 2.17 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.87 -26.21 13.67 55.48 0.76 -25.45 16 24 Si 0.94 21.26 29.55 -169.99 -5.02 16.24 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 28 C -0.17 -3.98 9.65 -39.39 -0.38 -4.36 16 29 H 0.08 0.27 7.29 -51.92 -0.38 -0.10 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.21 7.15 -51.93 -0.37 -0.16 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.38 1.04 9.12 45.56 0.42 1.45 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.76 7.14 -51.93 -0.37 0.39 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.40 3.67 6.90 -40.82 -0.28 3.39 16 39 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 40 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 41 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.11 2.51 8.06 -52.49 -0.42 2.08 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -36.16 386.70 -7.71 -43.87 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.73 Total: 7.75 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -0.87 Total: -16.31 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.57 Total: -33.61 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.27 Total: -19.86 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.16 -7.71 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089860627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.265 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds