Wall clock time and date at job start Tue Mar 31 2020 23:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46496 * 119.99611 * 2 1 4 4 C 1.53002 * 109.47432 * 84.99930 * 3 2 1 5 5 H 1.09000 * 109.48056 * 304.97699 * 4 3 2 6 6 C 1.53088 * 109.48526 * 184.94250 * 4 3 2 7 7 C 1.53174 * 109.16526 * 182.41247 * 6 4 3 8 8 C 1.53177 * 109.04121 * 56.97657 * 7 6 4 9 9 C 1.53091 * 109.16183 * 303.02537 * 8 7 6 10 10 O 1.42903 * 109.47844 * 64.99794 * 4 3 2 11 11 S 1.65593 * 120.00457 * 179.97438 * 2 1 3 12 12 O 1.42091 * 106.40604 * 203.54125 * 11 2 1 13 13 O 1.42105 * 106.40229 * 336.46287 * 11 2 1 14 14 C 1.76206 * 107.21856 * 89.99748 * 11 2 1 15 15 C 1.38631 * 119.75175 * 269.73044 * 14 11 2 16 16 C 1.37619 * 120.24894 * 179.76409 * 15 14 11 17 17 C 1.40712 * 119.74069 * 0.48214 * 16 15 14 18 18 C 1.41399 * 120.24149 * 179.79249 * 17 16 15 19 19 H 1.07998 * 120.00052 * 204.38141 * 18 17 16 20 20 C 1.39952 * 120.00027 * 24.37491 * 18 17 16 21 21 N 1.30821 * 119.99719 * 17.86966 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 197.86839 * 20 18 17 23 23 H 1.48508 * 109.46847 * 60.00164 * 22 20 18 24 24 H 1.48495 * 109.47286 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47237 * 300.00339 * 22 20 18 26 26 C 1.40714 * 119.51734 * 359.76800 * 17 16 15 27 27 C 1.37620 * 119.73893 * 0.02562 * 26 17 16 28 28 H 1.08991 * 109.46854 * 89.99869 * 1 2 3 29 29 H 1.08995 * 109.46917 * 329.99692 * 1 2 3 30 30 H 1.09001 * 109.46251 * 210.00004 * 1 2 3 31 31 H 1.09001 * 109.47438 * 204.99957 * 3 2 1 32 32 H 1.09003 * 109.47487 * 325.00362 * 3 2 1 33 33 H 1.09007 * 109.52185 * 302.31486 * 6 4 3 34 34 H 1.08993 * 109.52288 * 62.50128 * 6 4 3 35 35 H 1.09004 * 109.54310 * 297.11422 * 7 6 4 36 36 H 1.09006 * 109.54305 * 176.84845 * 7 6 4 37 37 H 1.08995 * 109.52677 * 183.11460 * 8 7 6 38 38 H 1.09004 * 109.51959 * 62.92185 * 8 7 6 39 39 H 1.08999 * 109.47809 * 297.62044 * 9 8 7 40 40 H 1.09005 * 109.47962 * 177.58524 * 9 8 7 41 41 H 1.08008 * 119.87260 * 359.97438 * 15 14 11 42 42 H 1.08004 * 120.12730 * 180.27915 * 16 15 14 43 43 H 0.97002 * 119.99833 * 179.97438 * 21 20 18 44 44 H 1.07993 * 120.12921 * 180.02562 * 26 17 16 45 45 H 1.08001 * 119.87272 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7734 1.4370 5 1 1.3594 1.8402 1.9006 6 6 2.9990 3.1568 1.4282 7 6 3.1967 3.6288 2.8720 8 6 4.0360 2.5927 3.6259 9 6 3.3405 1.2310 3.5498 10 8 3.1598 0.8658 2.1801 11 16 2.2932 -1.4340 0.0006 12 8 3.5760 -1.1564 0.5449 13 8 1.4115 -2.4063 0.5455 14 6 2.5539 -1.8865 -1.6822 15 6 1.6162 -2.6697 -2.3373 16 6 1.8072 -3.0251 -3.6530 17 6 2.9646 -2.5988 -4.3303 18 6 3.1736 -2.9614 -5.6809 19 1 4.1756 -2.9931 -6.0826 20 6 2.0821 -3.2794 -6.4970 21 7 0.8753 -2.9165 -6.1460 22 14 2.3485 -4.2220 -8.0876 23 1 2.9660 -5.5384 -7.7854 24 1 1.0429 -4.4318 -8.7633 25 1 3.2483 -3.4459 -8.9782 26 6 3.9122 -1.8085 -3.6538 27 6 3.6983 -1.4616 -2.3394 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 0.8899 0.5139 30 1 -0.3632 -0.8900 0.5139 31 1 3.1858 1.1178 -0.4343 32 1 1.6501 2.0044 -0.5894 33 1 3.9660 3.0987 0.9284 34 1 2.3565 3.8609 0.8996 35 1 2.2263 3.7346 3.3571 36 1 3.7137 4.5884 2.8744 37 1 4.1351 2.8933 4.6689 38 1 5.0239 2.5230 3.1705 39 1 2.3694 1.2909 4.0412 40 1 3.9547 0.4808 4.0480 41 1 0.7307 -2.9994 -1.8140 42 1 1.0731 -3.6316 -4.1628 43 1 0.1188 -3.1365 -6.7119 44 1 4.8037 -1.4755 -4.1642 45 1 4.4244 -0.8555 -1.8180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:13 Heat of formation + Delta-G solvation = -114.456720 kcal Electronic energy + Delta-G solvation = -28088.272021 eV Core-core repulsion = 24196.859139 eV Total energy + Delta-G solvation = -3891.412882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.42396 -37.51720 -36.32967 -35.90029 -34.88138 -33.99323 -33.60321 -31.62469 -30.19796 -29.41632 -27.61717 -25.77159 -25.31823 -23.83907 -22.04016 -21.39937 -21.07105 -20.30997 -18.23979 -17.58376 -17.10329 -16.58176 -16.18167 -15.94713 -15.48297 -15.40950 -14.73703 -14.53659 -14.11860 -14.08660 -13.70476 -13.36602 -13.16445 -13.03410 -12.73020 -12.52745 -12.35547 -12.31633 -12.12783 -11.87208 -11.72330 -11.34846 -11.32061 -11.24693 -11.20914 -11.08996 -11.03325 -10.92978 -10.85171 -10.79716 -10.36883 -10.30149 -9.69680 -9.51137 -9.46148 -9.36224 -8.57196 -7.90129 -7.65244 -7.10672 -4.75822 1.36642 2.32120 2.89808 2.91431 2.95919 2.97807 3.66847 3.68884 3.89377 4.29383 4.59963 4.70792 4.75019 4.77802 4.91683 5.07308 5.19232 5.21647 5.26979 5.37718 5.46065 5.52801 5.60265 5.63729 5.68578 5.76769 5.79958 5.88334 5.93728 6.02550 6.03840 6.12159 6.15973 6.17339 6.35996 6.71236 6.72739 6.87771 7.07760 7.11600 7.38644 7.40240 7.47614 7.68905 7.81284 8.01319 8.36186 8.55519 8.69891 9.80889 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.002844 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.521481 B = 9842.580556 C =10031.055496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.004 6.004 3 C 0.137 3.863 4 C 0.067 3.933 5 H 0.057 0.943 6 C -0.150 4.150 7 C -0.120 4.120 8 C -0.157 4.157 9 C 0.057 3.943 10 O -0.349 6.349 11 S 2.693 3.307 12 O -0.958 6.958 13 O -0.987 6.987 14 C -0.789 4.789 15 C -0.017 4.017 16 C -0.184 4.184 17 C 0.139 3.861 18 C -0.438 4.438 19 H 0.087 0.913 20 C 0.073 3.927 21 N -0.768 5.768 22 Si 0.917 3.083 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.262 1.262 26 C -0.240 4.240 27 C 0.001 3.999 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.289 0.711 44 H 0.099 0.901 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 11.062 10.575 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.838 5.838 3 C 0.011 3.989 4 C 0.007 3.993 5 H 0.075 0.925 6 C -0.188 4.188 7 C -0.157 4.157 8 C -0.194 4.194 9 C -0.020 4.020 10 O -0.268 6.268 11 S 2.791 3.209 12 O -0.948 6.948 13 O -0.978 6.978 14 C -0.884 4.884 15 C -0.037 4.037 16 C -0.204 4.204 17 C 0.136 3.864 18 C -0.466 4.466 19 H 0.105 0.895 20 C -0.149 4.149 21 N -0.391 5.391 22 Si 0.740 3.260 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.186 1.186 26 C -0.260 4.260 27 C -0.019 4.019 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.861 10.474 11.194 15.354 hybrid contribution -0.236 0.099 -1.399 1.422 sum -1.097 10.573 9.795 14.455 Atomic orbital electron populations 1.21471 0.79358 1.03102 1.01887 1.57629 1.14534 1.21341 1.90307 1.21193 0.97656 0.86214 0.93879 1.22651 0.93572 0.89134 0.93948 0.92468 1.22164 1.02422 0.96883 0.97367 1.21557 1.00086 0.98539 0.95558 1.22199 1.00420 0.96156 1.00650 1.22557 0.99144 0.96049 0.84265 1.88274 1.70251 1.47503 1.20742 1.01477 0.72757 0.71717 0.74945 1.93526 1.39360 1.84067 1.77880 1.93447 1.67134 1.58563 1.78680 1.29433 1.08112 1.26041 1.24826 1.20265 0.95184 0.93695 0.94551 1.21337 1.00772 1.05224 0.93060 1.17837 0.90450 0.85671 0.92454 1.19895 0.94636 1.37194 0.94843 0.89531 1.26122 0.94432 0.93590 1.00766 1.69813 1.00296 1.31874 1.37073 0.86205 0.78932 0.80805 0.80036 1.18372 1.19940 1.18595 1.21050 1.02531 1.07149 0.95313 1.20172 0.93206 0.94540 0.93990 0.92704 0.91757 0.90283 0.89157 0.89330 0.90542 0.90901 0.92092 0.91633 0.91324 0.90866 0.93827 0.88946 0.88037 0.86021 0.90012 0.88262 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.68 59.85 0.64 1.83 16 2 N -1.00 -16.30 3.13 -121.76 -0.38 -16.68 16 3 C 0.14 1.88 5.08 -4.04 -0.02 1.86 16 4 C 0.07 0.85 2.89 -26.68 -0.08 0.77 16 5 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 6 C -0.15 -1.48 5.42 -26.60 -0.14 -1.63 16 7 C -0.12 -1.05 6.03 -26.55 -0.16 -1.21 16 8 C -0.16 -1.49 6.14 -26.59 -0.16 -1.66 16 9 C 0.06 0.68 6.84 37.20 0.25 0.93 16 10 O -0.35 -5.43 8.46 -54.45 -0.46 -5.89 16 11 S 2.69 55.19 5.61 -107.50 -0.60 54.58 16 12 O -0.96 -20.98 14.41 -65.29 -0.94 -21.92 16 13 O -0.99 -22.25 15.85 -57.17 -0.91 -23.15 16 14 C -0.79 -18.04 6.00 -39.29 -0.24 -18.28 16 15 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 16 C -0.18 -4.70 8.70 -38.87 -0.34 -5.04 16 17 C 0.14 3.60 5.58 -106.83 -0.60 3.00 16 18 C -0.44 -10.91 9.05 -37.74 -0.34 -11.25 16 19 H 0.09 2.03 7.91 -52.49 -0.42 1.62 16 20 C 0.07 1.69 5.14 -17.34 -0.09 1.61 16 21 N -0.77 -18.40 10.95 55.55 0.61 -17.80 16 22 Si 0.92 17.22 29.60 -169.99 -5.03 12.19 16 23 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 26 C -0.24 -5.78 9.80 -38.87 -0.38 -6.16 16 27 C 0.00 0.02 9.49 -39.66 -0.38 -0.35 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 30 H 0.08 1.13 7.02 -51.93 -0.36 0.77 16 31 H 0.09 1.33 7.61 -51.93 -0.40 0.94 16 32 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 2.26 7.59 -52.48 -0.40 1.87 16 42 H 0.12 3.13 6.15 -52.48 -0.32 2.81 16 43 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 44 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 45 H 0.10 2.14 7.60 -52.49 -0.40 1.74 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -30.94 373.48 -11.41 -42.35 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.92 Total: 7.03 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: -2.40 Total: -36.34 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.23 Total: -34.47 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -2.31 Total: -50.96 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 16 Polarization: 55.19 SS G_CDS: -0.60 Total: 54.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.94 -11.41 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.104 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds