Wall clock time and date at job start Tue Mar 31 2020 23:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46496 * 119.99611 * 2 1 4 4 C 1.53002 * 109.47432 * 84.99930 * 3 2 1 5 5 H 1.09000 * 109.48056 * 304.97699 * 4 3 2 6 6 C 1.53088 * 109.48526 * 184.94250 * 4 3 2 7 7 C 1.53174 * 109.16526 * 182.41247 * 6 4 3 8 8 C 1.53177 * 109.04121 * 56.97657 * 7 6 4 9 9 C 1.53091 * 109.16183 * 303.02537 * 8 7 6 10 10 O 1.42903 * 109.47844 * 64.99794 * 4 3 2 11 11 S 1.65593 * 120.00457 * 179.97438 * 2 1 3 12 12 O 1.42091 * 106.40604 * 203.54125 * 11 2 1 13 13 O 1.42105 * 106.40229 * 336.46287 * 11 2 1 14 14 C 1.76206 * 107.21856 * 89.99748 * 11 2 1 15 15 C 1.38631 * 119.75175 * 269.73044 * 14 11 2 16 16 C 1.37619 * 120.24894 * 179.76409 * 15 14 11 17 17 C 1.40712 * 119.74069 * 0.48214 * 16 15 14 18 18 C 1.41399 * 120.24149 * 179.79249 * 17 16 15 19 19 H 1.07998 * 120.00052 * 204.38141 * 18 17 16 20 20 C 1.39952 * 120.00027 * 24.37491 * 18 17 16 21 21 N 1.30821 * 119.99719 * 17.86966 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 197.86839 * 20 18 17 23 23 H 1.48508 * 109.46847 * 60.00164 * 22 20 18 24 24 H 1.48495 * 109.47286 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47237 * 300.00339 * 22 20 18 26 26 C 1.40714 * 119.51734 * 359.76800 * 17 16 15 27 27 C 1.37620 * 119.73893 * 0.02562 * 26 17 16 28 28 H 1.08991 * 109.46854 * 89.99869 * 1 2 3 29 29 H 1.08995 * 109.46917 * 329.99692 * 1 2 3 30 30 H 1.09001 * 109.46251 * 210.00004 * 1 2 3 31 31 H 1.09001 * 109.47438 * 204.99957 * 3 2 1 32 32 H 1.09003 * 109.47487 * 325.00362 * 3 2 1 33 33 H 1.09007 * 109.52185 * 302.31486 * 6 4 3 34 34 H 1.08993 * 109.52288 * 62.50128 * 6 4 3 35 35 H 1.09004 * 109.54310 * 297.11422 * 7 6 4 36 36 H 1.09006 * 109.54305 * 176.84845 * 7 6 4 37 37 H 1.08995 * 109.52677 * 183.11460 * 8 7 6 38 38 H 1.09004 * 109.51959 * 62.92185 * 8 7 6 39 39 H 1.08999 * 109.47809 * 297.62044 * 9 8 7 40 40 H 1.09005 * 109.47962 * 177.58524 * 9 8 7 41 41 H 1.08008 * 119.87260 * 359.97438 * 15 14 11 42 42 H 1.08004 * 120.12730 * 180.27915 * 16 15 14 43 43 H 0.97002 * 119.99833 * 179.97438 * 21 20 18 44 44 H 1.07993 * 120.12921 * 180.02562 * 26 17 16 45 45 H 1.08001 * 119.87272 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7734 1.4370 5 1 1.3594 1.8402 1.9006 6 6 2.9990 3.1568 1.4282 7 6 3.1967 3.6288 2.8720 8 6 4.0360 2.5927 3.6259 9 6 3.3405 1.2310 3.5498 10 8 3.1598 0.8658 2.1801 11 16 2.2932 -1.4340 0.0006 12 8 3.5760 -1.1564 0.5449 13 8 1.4115 -2.4063 0.5455 14 6 2.5539 -1.8865 -1.6822 15 6 1.6162 -2.6697 -2.3373 16 6 1.8072 -3.0251 -3.6530 17 6 2.9646 -2.5988 -4.3303 18 6 3.1736 -2.9614 -5.6809 19 1 4.1756 -2.9931 -6.0826 20 6 2.0821 -3.2794 -6.4970 21 7 0.8753 -2.9165 -6.1460 22 14 2.3485 -4.2220 -8.0876 23 1 2.9660 -5.5384 -7.7854 24 1 1.0429 -4.4318 -8.7633 25 1 3.2483 -3.4459 -8.9782 26 6 3.9122 -1.8085 -3.6538 27 6 3.6983 -1.4616 -2.3394 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 0.8899 0.5139 30 1 -0.3632 -0.8900 0.5139 31 1 3.1858 1.1178 -0.4343 32 1 1.6501 2.0044 -0.5894 33 1 3.9660 3.0987 0.9284 34 1 2.3565 3.8609 0.8996 35 1 2.2263 3.7346 3.3571 36 1 3.7137 4.5884 2.8744 37 1 4.1351 2.8933 4.6689 38 1 5.0239 2.5230 3.1705 39 1 2.3694 1.2909 4.0412 40 1 3.9547 0.4808 4.0480 41 1 0.7307 -2.9994 -1.8140 42 1 1.0731 -3.6316 -4.1628 43 1 0.1188 -3.1365 -6.7119 44 1 4.8037 -1.4755 -4.1642 45 1 4.4244 -0.8555 -1.8180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:12 Heat of formation + Delta-G solvation = -132.566477 kcal Electronic energy + Delta-G solvation = -28089.057319 eV Core-core repulsion = 24196.859139 eV Total energy + Delta-G solvation = -3892.198180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.34368 -39.37519 -38.04295 -37.07871 -36.59852 -35.79657 -34.44227 -32.56345 -32.05258 -31.29344 -28.60872 -27.60618 -26.37861 -24.73326 -23.29193 -22.98526 -22.93317 -21.10829 -19.76557 -19.42461 -18.61087 -18.14916 -17.36905 -17.16647 -16.85798 -16.72584 -15.85493 -15.74680 -15.57163 -15.30660 -15.01058 -14.97736 -14.66248 -14.13187 -14.05947 -13.94407 -13.85101 -13.54403 -13.44766 -13.26267 -13.11128 -12.97938 -12.89235 -12.81458 -12.57665 -12.51801 -12.34306 -12.12403 -11.98937 -11.86547 -11.66926 -11.54611 -11.28650 -11.21493 -11.16812 -10.28421 -9.87188 -9.73660 -9.55504 -8.86848 -6.64425 -0.23911 0.50112 1.04882 1.35544 1.44660 1.49800 2.11412 2.23294 2.54153 2.93101 3.10057 3.51683 3.61698 3.83737 3.96031 4.01054 4.04263 4.11352 4.28778 4.31479 4.32315 4.37865 4.49886 4.58130 4.70600 4.74333 4.85005 4.85688 4.91015 4.94411 4.97672 4.99920 5.08350 5.10274 5.16452 5.22340 5.24644 5.25094 5.46948 5.51965 5.59122 5.71509 5.82585 5.93754 6.15286 6.48717 6.48990 6.68168 6.81154 8.08315 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.002844 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.521481 B = 9842.580556 C =10031.055496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.998 5.998 3 C 0.126 3.874 4 C 0.063 3.937 5 H 0.070 0.930 6 C -0.147 4.147 7 C -0.118 4.118 8 C -0.153 4.153 9 C 0.047 3.953 10 O -0.390 6.390 11 S 2.716 3.284 12 O -0.973 6.973 13 O -1.010 7.010 14 C -0.801 4.801 15 C -0.023 4.023 16 C -0.207 4.207 17 C 0.111 3.889 18 C -0.468 4.468 19 H 0.092 0.908 20 C 0.035 3.965 21 N -0.796 5.796 22 Si 0.991 3.009 23 H -0.260 1.260 24 H -0.263 1.263 25 H -0.253 1.253 26 C -0.257 4.257 27 C -0.002 4.002 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.299 0.701 44 H 0.112 0.888 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 12.896 10.750 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.836 5.836 3 C 0.001 3.999 4 C 0.004 3.996 5 H 0.088 0.912 6 C -0.185 4.185 7 C -0.155 4.155 8 C -0.190 4.190 9 C -0.029 4.029 10 O -0.310 6.310 11 S 2.812 3.188 12 O -0.963 6.963 13 O -1.001 7.001 14 C -0.892 4.892 15 C -0.043 4.043 16 C -0.228 4.228 17 C 0.107 3.893 18 C -0.495 4.495 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.419 5.419 22 Si 0.811 3.189 23 H -0.184 1.184 24 H -0.187 1.187 25 H -0.177 1.177 26 C -0.277 4.277 27 C -0.021 4.021 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.130 0.870 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.418 12.309 11.354 16.806 hybrid contribution -0.102 -0.392 -1.329 1.390 sum -1.519 11.916 10.025 15.646 Atomic orbital electron populations 1.21715 0.77511 1.04627 1.02633 1.57282 1.15649 1.20751 1.89895 1.21556 0.97186 0.85555 0.95613 1.22772 0.94202 0.89945 0.92696 0.91167 1.22155 1.02099 0.95726 0.98528 1.21578 1.00676 0.98707 0.94554 1.22164 0.99650 0.95190 1.02025 1.22738 1.00006 0.97260 0.82929 1.88208 1.71057 1.49257 1.22438 1.00731 0.72375 0.72213 0.73528 1.93501 1.40697 1.84550 1.77600 1.93410 1.67580 1.60474 1.78637 1.29913 1.07693 1.25464 1.26174 1.20446 0.95877 0.93740 0.94260 1.21358 1.01174 1.06324 0.93903 1.18188 0.91069 0.86551 0.93452 1.20199 0.95616 1.38581 0.95065 0.89034 1.27011 0.93684 0.93748 1.04042 1.69842 1.01227 1.32206 1.38599 0.85097 0.79315 0.78974 0.75555 1.18392 1.18699 1.17732 1.21285 1.02961 1.07397 0.96107 1.20435 0.93578 0.94346 0.93776 0.92398 0.87741 0.91289 0.90672 0.85948 0.91633 0.88549 0.90941 0.90054 0.89309 0.92094 0.92657 0.89624 0.87081 0.87068 0.89019 0.86997 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.02 10.68 127.77 1.36 3.39 16 2 N -1.00 -31.07 3.13 -539.12 -1.69 -32.76 16 3 C 0.13 3.23 5.08 86.38 0.44 3.66 16 4 C 0.06 1.46 2.89 30.62 0.09 1.54 16 5 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 6 C -0.15 -2.50 5.42 30.68 0.17 -2.34 16 7 C -0.12 -1.69 6.03 30.71 0.19 -1.51 16 8 C -0.15 -2.62 6.14 30.68 0.19 -2.43 16 9 C 0.05 1.07 6.84 72.01 0.49 1.56 16 10 O -0.39 -11.78 8.46 -130.60 -1.11 -12.88 16 11 S 2.72 111.15 5.61 -56.49 -0.32 110.83 16 12 O -0.97 -42.74 14.41 -120.24 -1.73 -44.47 16 13 O -1.01 -45.71 15.85 -128.00 -2.03 -47.74 16 14 C -0.80 -37.09 6.00 22.46 0.13 -36.95 16 15 C -0.02 -1.15 9.49 22.22 0.21 -0.94 16 16 C -0.21 -11.00 8.70 22.73 0.20 -10.80 16 17 C 0.11 5.90 5.58 -21.29 -0.12 5.78 16 18 C -0.47 -23.80 9.05 23.46 0.21 -23.58 16 19 H 0.09 4.38 7.91 -2.91 -0.02 4.36 16 20 C 0.03 1.62 5.14 85.26 0.44 2.06 16 21 N -0.80 -38.67 10.95 21.83 0.24 -38.43 16 22 Si 0.99 34.91 29.60 68.60 2.03 36.94 16 23 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 24 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 25 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 26 C -0.26 -12.68 9.80 22.73 0.22 -12.45 16 27 C 0.00 -0.08 9.49 22.22 0.21 0.13 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.10 1.81 8.07 -2.39 -0.02 1.79 16 30 H 0.07 1.90 7.02 -2.39 -0.02 1.88 16 31 H 0.07 2.16 7.61 -2.39 -0.02 2.14 16 32 H 0.12 2.27 8.11 -2.39 -0.02 2.25 16 33 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.11 5.09 7.59 -2.91 -0.02 5.07 16 42 H 0.11 5.99 6.15 -2.91 -0.02 5.97 16 43 H 0.30 12.88 8.30 -92.71 -0.77 12.11 16 44 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 45 H 0.12 5.11 7.60 -2.91 -0.02 5.09 16 Total: -1.00 -68.37 373.48 0.81 -67.56 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.98 Total: 33.80 kcal Atomic # 6 Polarization: -77.29 SS G_CDS: 4.43 Total: -72.86 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -1.45 Total: -71.18 kcal Atomic # 8 Polarization: -100.22 SS G_CDS: -4.87 Total: -105.09 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Atomic # 16 Polarization: 111.15 SS G_CDS: -0.32 Total: 110.83 kcal Total: -68.37 0.81 -67.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.007 kcal (2) G-P(sol) polarization free energy of solvation -68.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds