Wall clock time and date at job start Tue Mar 31 2020 23:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35903 * 116.99509 * 2 1 4 4 C 1.38736 * 120.05106 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94525 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05475 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94561 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.99967 * 18.91264 * 7 6 5 9 9 C 1.54340 * 109.99388 * 257.86988 * 7 6 5 10 10 C 1.55152 * 103.01984 * 218.66439 * 9 7 6 11 11 C 1.54906 * 101.58358 * 35.30973 * 10 9 7 12 12 N 1.47021 * 109.88175 * 140.00494 * 7 6 5 13 13 S 1.65602 * 125.64838 * 298.39451 * 12 7 6 14 14 O 1.42101 * 104.27810 * 153.64633 * 13 12 7 15 15 O 1.42100 * 104.27444 * 25.79372 * 13 12 7 16 16 C 1.81396 * 104.45191 * 269.71820 * 13 12 7 17 17 C 1.52992 * 109.47323 * 179.97438 * 16 13 12 18 18 C 1.50700 * 109.47257 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99988 * 359.97438 * 18 17 16 20 20 C 1.37885 * 120.00047 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99792 * 359.72305 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47088 * 89.99795 * 22 20 18 24 24 H 1.48495 * 109.47293 * 209.99997 * 22 20 18 25 25 H 1.48507 * 109.47015 * 329.99955 * 22 20 18 26 26 C 1.38270 * 120.11089 * 0.25670 * 6 5 4 27 27 C 1.38146 * 120.05468 * 359.44764 * 26 6 5 28 28 H 1.09005 * 109.47422 * 59.99839 * 1 2 3 29 29 H 1.08998 * 109.46647 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47147 * 299.99693 * 1 2 3 31 31 H 1.08005 * 120.02924 * 0.04819 * 4 3 2 32 32 H 1.07995 * 119.97688 * 180.02562 * 5 4 3 33 33 H 1.08994 * 110.84526 * 100.19777 * 9 7 6 34 34 H 1.09000 * 110.66819 * 337.04881 * 9 7 6 35 35 H 1.09002 * 111.00770 * 277.23355 * 10 9 7 36 36 H 1.09005 * 111.03398 * 153.39755 * 10 9 7 37 37 H 1.09000 * 110.37085 * 204.15181 * 11 10 9 38 38 H 1.09005 * 110.37001 * 81.82537 * 11 10 9 39 39 H 1.09004 * 109.46981 * 59.99556 * 16 13 12 40 40 H 1.09005 * 109.47123 * 299.99974 * 16 13 12 41 41 H 1.09004 * 109.47330 * 59.99922 * 17 16 13 42 42 H 1.08997 * 109.47279 * 300.00409 * 17 16 13 43 43 H 0.97000 * 119.99468 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.97201 * 179.69905 * 26 6 5 45 45 H 1.08000 * 120.03055 * 180.24764 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 1 5.0185 4.9112 -0.3298 9 6 3.9547 5.6256 1.4214 10 6 3.7037 7.1327 1.1513 11 6 2.7674 7.0760 -0.0815 12 7 3.2688 5.9459 -0.8845 13 16 3.0538 5.7499 -2.5148 14 8 1.8616 6.4687 -2.7999 15 8 3.1265 4.3444 -2.7113 16 6 4.4872 6.5723 -3.2626 17 6 4.4033 6.4581 -4.7860 18 6 5.5939 7.1420 -5.4073 19 1 6.3359 7.6115 -4.7785 20 6 5.7353 7.1692 -6.7786 21 7 4.8340 6.5936 -7.5441 22 14 7.2113 8.0162 -7.5487 23 1 8.3184 7.0385 -7.7028 24 1 6.8350 8.5519 -8.8816 25 1 7.6541 9.1316 -6.6739 26 6 1.9210 3.6048 0.0080 27 6 1.2915 2.3751 0.0013 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0209 0.3800 -0.0017 32 1 5.1345 2.5751 -0.0008 33 1 4.9086 5.4781 1.9276 34 1 3.1398 5.1974 2.0052 35 1 4.6344 7.6470 0.9118 36 1 3.2059 7.6044 1.9986 37 1 2.8323 8.0037 -0.6501 38 1 1.7393 6.8927 0.2310 39 1 5.4030 6.0958 -2.9127 40 1 4.4928 7.6241 -2.9765 41 1 3.4875 6.9344 -5.1362 42 1 4.3979 5.4063 -5.0718 43 1 4.9333 6.6131 -8.5088 44 1 1.3342 4.5114 0.0142 45 1 0.2129 2.3201 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104107675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:08 Heat of formation + Delta-G solvation = -84.472833 kcal Electronic energy + Delta-G solvation = -27966.707674 eV Core-core repulsion = 24076.594992 eV Total energy + Delta-G solvation = -3890.112683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28076 -38.95010 -36.91611 -36.46456 -35.35710 -33.88036 -31.33717 -31.14357 -31.07644 -30.83864 -28.16376 -26.83337 -25.58427 -23.16256 -22.54169 -21.74538 -21.38058 -20.79113 -18.53884 -18.12872 -17.50100 -16.85156 -16.40236 -15.79812 -15.77525 -15.58697 -15.21063 -14.83435 -14.56028 -14.29919 -13.90002 -13.76380 -13.44798 -13.40802 -13.21660 -12.99560 -12.52833 -12.48962 -12.39098 -11.96533 -11.74006 -11.58707 -11.50289 -11.47940 -11.34174 -11.17419 -11.07980 -10.95601 -10.92474 -10.78890 -10.71221 -10.40336 -10.36834 -9.76208 -9.34069 -8.90250 -8.80712 -8.50054 -7.99892 -6.12040 -4.17681 0.76179 1.43846 1.48075 3.08381 3.23047 3.26127 3.32183 3.34963 3.80123 4.29308 4.32116 4.39752 4.53271 4.67663 4.78044 4.87337 4.90642 4.96426 4.99764 5.04098 5.20757 5.23028 5.31161 5.39319 5.40197 5.49175 5.60705 5.61474 5.67891 5.69161 5.72608 5.76355 5.78311 6.04298 6.06435 6.18225 6.29366 6.41142 6.49774 6.50699 6.74881 6.79908 7.30360 7.36590 7.38793 7.80829 8.18027 8.85629 9.46936 10.99026 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003316 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.354141 B = 8441.665591 C = 9460.364904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.123 3.877 4 C -0.148 4.148 5 C -0.063 4.063 6 C -0.119 4.119 7 C 0.196 3.804 8 H 0.083 0.917 9 C -0.118 4.118 10 C -0.131 4.131 11 C 0.121 3.879 12 N -1.013 6.013 13 S 2.599 3.401 14 O -0.964 6.964 15 O -0.947 6.947 16 C -0.591 4.591 17 C 0.029 3.971 18 C -0.520 4.520 19 H 0.061 0.939 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.061 4.061 27 C -0.205 4.205 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.265 0.735 44 H 0.119 0.881 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 -5.793 22.059 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.167 4.167 5 C -0.082 4.082 6 C -0.121 4.121 7 C 0.090 3.910 8 H 0.101 0.899 9 C -0.157 4.157 10 C -0.170 4.170 11 C -0.005 4.005 12 N -0.848 5.848 13 S 2.698 3.302 14 O -0.955 6.955 15 O -0.937 6.937 16 C -0.724 4.724 17 C -0.010 4.010 18 C -0.559 4.559 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.079 4.079 27 C -0.223 4.223 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.137 0.863 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.542 -6.483 21.397 23.034 hybrid contribution 1.016 0.932 -0.628 1.515 sum -4.526 -5.551 20.770 21.970 Atomic orbital electron populations 1.23027 0.78663 1.03657 1.01398 1.86042 1.21206 1.27210 1.88958 1.18997 0.92423 0.83912 0.96868 1.20316 0.91264 0.98471 1.06652 1.20707 0.99618 0.90877 0.96964 1.19942 0.93936 0.94746 1.03476 1.20077 0.94641 0.85712 0.90607 0.89924 1.22691 1.02964 0.95182 0.94877 1.22815 1.00255 0.96305 0.97659 1.21939 0.97490 0.88900 0.92138 1.59090 1.69751 1.31449 1.24537 1.05540 0.77528 0.75442 0.71651 1.93534 1.43854 1.75338 1.82758 1.93586 1.87637 1.28948 1.83538 1.30503 1.17646 1.12417 1.11809 1.18950 0.99622 0.99056 0.83400 1.21002 1.07257 1.36184 0.91502 0.92059 1.25077 0.96680 0.95455 0.97299 1.69961 1.34601 1.43394 1.04875 0.86466 0.82432 0.79698 0.78675 1.20430 1.20983 1.19758 1.20660 0.94069 0.96835 0.96377 1.21138 0.99757 0.92389 1.09042 0.92552 0.88447 0.92840 0.85348 0.85327 0.90030 0.90458 0.90373 0.90110 0.90530 0.91611 0.86339 0.86467 0.95008 0.94848 0.92526 0.86258 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.07 10.50 -19.43 -0.20 -4.27 16 3 C 0.12 1.70 6.69 -39.22 -0.26 1.44 16 4 C -0.15 -1.97 9.99 -39.43 -0.39 -2.36 16 5 C -0.06 -0.81 9.67 -39.61 -0.38 -1.19 16 6 C -0.12 -1.61 3.29 -104.60 -0.34 -1.95 16 7 C 0.20 2.32 3.24 -68.10 -0.22 2.10 16 8 H 0.08 0.90 8.02 -51.93 -0.42 0.48 16 9 C -0.12 -0.99 6.46 -24.89 -0.16 -1.15 16 10 C -0.13 -1.04 7.09 -24.59 -0.17 -1.21 16 11 C 0.12 1.32 6.89 -2.53 -0.02 1.30 16 12 N -1.01 -14.01 2.60 -105.63 -0.27 -14.28 16 13 S 2.60 48.76 5.63 -107.50 -0.61 48.15 16 14 O -0.96 -20.67 17.60 -57.54 -1.01 -21.68 16 15 O -0.95 -20.09 15.85 -57.54 -0.91 -21.00 16 16 C -0.59 -11.70 6.11 37.15 0.23 -11.47 16 17 C 0.03 0.75 4.98 -27.89 -0.14 0.61 16 18 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 22 Si 0.90 21.35 29.54 -169.99 -5.02 16.32 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.06 -0.85 8.82 -39.60 -0.35 -1.20 16 27 C -0.20 -2.76 9.04 -39.43 -0.36 -3.12 16 28 H 0.06 0.49 7.67 -51.93 -0.40 0.10 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 31 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.13 1.32 8.04 -52.49 -0.42 0.90 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.63 7.76 -51.93 -0.40 0.23 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 40 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 41 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.12 1.59 7.74 -52.49 -0.41 1.18 16 45 H 0.12 1.40 6.30 -52.49 -0.33 1.06 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -36.24 381.69 -10.50 -46.74 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.97 Total: 0.62 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -1.99 Total: -30.33 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.46 Total: -40.31 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -2.13 Total: -46.95 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 48.76 SS G_CDS: -0.61 Total: 48.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.24 -10.50 -46.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104107675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.737 kcal (2) G-P(sol) polarization free energy of solvation -36.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds