Wall clock time and date at job start Tue Mar 31 2020 23:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35903 * 116.99509 * 2 1 4 4 C 1.38736 * 120.05106 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94525 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05475 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94561 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.99967 * 18.91264 * 7 6 5 9 9 C 1.54340 * 109.99388 * 257.86988 * 7 6 5 10 10 C 1.55152 * 103.01984 * 218.66439 * 9 7 6 11 11 C 1.54906 * 101.58358 * 35.30973 * 10 9 7 12 12 N 1.47021 * 109.88175 * 140.00494 * 7 6 5 13 13 S 1.65602 * 125.64838 * 298.39451 * 12 7 6 14 14 O 1.42101 * 104.27810 * 153.64633 * 13 12 7 15 15 O 1.42100 * 104.27444 * 25.79372 * 13 12 7 16 16 C 1.81396 * 104.45191 * 269.71820 * 13 12 7 17 17 C 1.52992 * 109.47323 * 179.97438 * 16 13 12 18 18 C 1.50700 * 109.47257 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99988 * 359.97438 * 18 17 16 20 20 C 1.37885 * 120.00047 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99792 * 359.72305 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47088 * 89.99795 * 22 20 18 24 24 H 1.48495 * 109.47293 * 209.99997 * 22 20 18 25 25 H 1.48507 * 109.47015 * 329.99955 * 22 20 18 26 26 C 1.38270 * 120.11089 * 0.25670 * 6 5 4 27 27 C 1.38146 * 120.05468 * 359.44764 * 26 6 5 28 28 H 1.09005 * 109.47422 * 59.99839 * 1 2 3 29 29 H 1.08998 * 109.46647 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47147 * 299.99693 * 1 2 3 31 31 H 1.08005 * 120.02924 * 0.04819 * 4 3 2 32 32 H 1.07995 * 119.97688 * 180.02562 * 5 4 3 33 33 H 1.08994 * 110.84526 * 100.19777 * 9 7 6 34 34 H 1.09000 * 110.66819 * 337.04881 * 9 7 6 35 35 H 1.09002 * 111.00770 * 277.23355 * 10 9 7 36 36 H 1.09005 * 111.03398 * 153.39755 * 10 9 7 37 37 H 1.09000 * 110.37085 * 204.15181 * 11 10 9 38 38 H 1.09005 * 110.37001 * 81.82537 * 11 10 9 39 39 H 1.09004 * 109.46981 * 59.99556 * 16 13 12 40 40 H 1.09005 * 109.47123 * 299.99974 * 16 13 12 41 41 H 1.09004 * 109.47330 * 59.99922 * 17 16 13 42 42 H 1.08997 * 109.47279 * 300.00409 * 17 16 13 43 43 H 0.97000 * 119.99468 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.97201 * 179.69905 * 26 6 5 45 45 H 1.08000 * 120.03055 * 180.24764 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 1 5.0185 4.9112 -0.3298 9 6 3.9547 5.6256 1.4214 10 6 3.7037 7.1327 1.1513 11 6 2.7674 7.0760 -0.0815 12 7 3.2688 5.9459 -0.8845 13 16 3.0538 5.7499 -2.5148 14 8 1.8616 6.4687 -2.7999 15 8 3.1265 4.3444 -2.7113 16 6 4.4872 6.5723 -3.2626 17 6 4.4033 6.4581 -4.7860 18 6 5.5939 7.1420 -5.4073 19 1 6.3359 7.6115 -4.7785 20 6 5.7353 7.1692 -6.7786 21 7 4.8340 6.5936 -7.5441 22 14 7.2113 8.0162 -7.5487 23 1 8.3184 7.0385 -7.7028 24 1 6.8350 8.5519 -8.8816 25 1 7.6541 9.1316 -6.6739 26 6 1.9210 3.6048 0.0080 27 6 1.2915 2.3751 0.0013 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0209 0.3800 -0.0017 32 1 5.1345 2.5751 -0.0008 33 1 4.9086 5.4781 1.9276 34 1 3.1398 5.1974 2.0052 35 1 4.6344 7.6470 0.9118 36 1 3.2059 7.6044 1.9986 37 1 2.8323 8.0037 -0.6501 38 1 1.7393 6.8927 0.2310 39 1 5.4030 6.0958 -2.9127 40 1 4.4928 7.6241 -2.9765 41 1 3.4875 6.9344 -5.1362 42 1 4.3979 5.4063 -5.0718 43 1 4.9333 6.6131 -8.5088 44 1 1.3342 4.5114 0.0142 45 1 0.2129 2.3201 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104107675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:07 Heat of formation + Delta-G solvation = -108.742197 kcal Electronic energy + Delta-G solvation = -27967.760073 eV Core-core repulsion = 24076.594992 eV Total energy + Delta-G solvation = -3891.165081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22054 -39.84579 -38.19561 -37.71520 -36.97170 -35.92082 -33.15377 -32.22074 -32.04822 -31.77131 -28.97394 -27.71619 -27.55864 -24.18431 -23.76741 -23.16912 -22.38344 -21.76762 -19.82163 -19.22240 -18.94944 -18.32211 -17.73090 -17.04643 -16.90491 -16.63917 -16.54670 -16.46346 -15.93741 -15.35752 -15.14031 -14.83208 -14.65373 -14.48475 -14.34828 -14.08509 -13.93106 -13.75227 -13.35897 -13.27917 -13.16076 -13.09021 -12.94544 -12.80285 -12.75430 -12.60973 -12.28775 -12.22744 -12.13414 -11.99002 -11.79046 -11.75612 -11.62673 -11.47163 -11.17805 -10.66938 -9.99796 -9.90368 -8.98224 -8.27931 -6.42757 -0.74005 0.43549 0.46883 1.39631 1.41978 1.53141 1.77922 2.36795 2.38939 2.80106 2.86731 3.05113 3.10870 3.70583 3.72953 3.82718 3.91814 3.97539 4.01801 4.13175 4.23056 4.29511 4.34832 4.36545 4.49625 4.56144 4.66531 4.68572 4.70885 4.74148 4.84003 4.99365 5.04127 5.08823 5.13740 5.22041 5.22166 5.24882 5.30263 5.40426 5.44886 5.55061 5.65672 5.75650 5.85572 6.03333 6.45495 6.70755 7.27663 8.84486 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003316 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.354141 B = 8441.665591 C = 9460.364904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.108 3.892 4 C -0.163 4.163 5 C -0.072 4.072 6 C -0.130 4.130 7 C 0.185 3.815 8 H 0.095 0.905 9 C -0.108 4.108 10 C -0.119 4.119 11 C 0.105 3.895 12 N -1.005 6.005 13 S 2.622 3.378 14 O -0.997 6.997 15 O -0.976 6.976 16 C -0.589 4.589 17 C 0.023 3.977 18 C -0.540 4.540 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.976 3.024 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.256 1.256 26 C -0.080 4.080 27 C -0.217 4.217 28 H 0.052 0.948 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.002 0.998 42 H 0.004 0.996 43 H 0.268 0.732 44 H 0.119 0.881 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 -4.795 24.294 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.063 3.937 4 C -0.181 4.181 5 C -0.090 4.090 6 C -0.132 4.132 7 C 0.080 3.920 8 H 0.113 0.887 9 C -0.147 4.147 10 C -0.157 4.157 11 C -0.019 4.019 12 N -0.844 5.844 13 S 2.721 3.279 14 O -0.988 6.988 15 O -0.967 6.967 16 C -0.721 4.721 17 C -0.016 4.016 18 C -0.579 4.579 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.574 5.574 22 Si 0.799 3.201 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.180 1.180 26 C -0.099 4.099 27 C -0.236 4.236 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.020 0.980 42 H 0.023 0.977 43 H 0.076 0.924 44 H 0.137 0.863 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.781 -5.478 23.636 24.555 hybrid contribution 0.377 0.560 -1.248 1.419 sum -3.404 -4.919 22.388 23.173 Atomic orbital electron populations 1.23303 0.76848 1.05508 1.01861 1.86018 1.23177 1.26842 1.88902 1.19228 0.92967 0.84390 0.97154 1.20648 0.91511 0.99376 1.06581 1.21057 1.00952 0.90557 0.96429 1.20222 0.93912 0.95870 1.03169 1.20470 0.94572 0.84727 0.92254 0.88689 1.22700 1.04529 0.95028 0.92479 1.22822 1.00059 0.96191 0.96675 1.22311 0.98673 0.87760 0.93166 1.58623 1.69980 1.33033 1.22736 1.04475 0.76481 0.74219 0.72762 1.93483 1.45288 1.75826 1.84192 1.93541 1.87750 1.30528 1.84853 1.30407 1.19766 1.14483 1.07458 1.18791 0.98093 0.96764 0.87982 1.21511 1.07954 1.36143 0.92267 0.90528 1.26165 0.99982 0.96118 0.98070 1.70114 1.37007 1.45030 1.05293 0.85282 0.78236 0.78908 0.77660 1.19476 1.20761 1.17986 1.20833 0.94737 0.97031 0.97260 1.21377 1.00723 0.92386 1.09083 0.92964 0.85976 0.91470 0.84077 0.82940 0.87439 0.90254 0.89329 0.87577 0.90408 0.91287 0.84150 0.84367 0.97954 0.97745 0.92351 0.86299 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.34 -8.47 10.50 -92.46 -0.97 -9.44 16 3 C 0.11 2.99 6.69 22.51 0.15 3.14 16 4 C -0.16 -4.27 9.99 22.37 0.22 -4.05 16 5 C -0.07 -1.77 9.67 22.25 0.22 -1.56 16 6 C -0.13 -3.38 3.29 -19.85 -0.07 -3.45 16 7 C 0.19 3.98 3.24 44.60 0.14 4.13 16 8 H 0.10 1.80 8.02 -2.39 -0.02 1.78 16 9 C -0.11 -1.44 6.46 31.79 0.21 -1.23 16 10 C -0.12 -1.42 7.09 31.98 0.23 -1.19 16 11 C 0.11 2.09 6.89 86.85 0.60 2.69 16 12 N -1.01 -26.48 2.60 -488.10 -1.27 -27.75 16 13 S 2.62 99.41 5.63 -56.49 -0.32 99.09 16 14 O -1.00 -43.89 17.60 -127.65 -2.25 -46.14 16 15 O -0.98 -42.44 15.85 -127.65 -2.02 -44.47 16 16 C -0.59 -23.23 6.11 71.98 0.44 -22.79 16 17 C 0.02 1.22 4.98 29.85 0.15 1.37 16 18 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 19 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 20 C -0.01 -0.29 5.46 84.66 0.46 0.18 16 21 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 22 Si 0.98 43.54 29.54 68.60 2.03 45.57 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 26 C -0.08 -2.24 8.82 22.26 0.20 -2.04 16 27 C -0.22 -5.90 9.04 22.36 0.20 -5.70 16 28 H 0.05 0.91 7.67 -2.38 -0.02 0.90 16 29 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 0.93 7.66 -2.38 -0.02 0.91 16 31 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 32 H 0.15 2.85 8.04 -2.91 -0.02 2.83 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.06 7.76 -2.39 -0.02 1.04 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 40 H 0.14 4.78 8.14 -2.39 -0.02 4.77 16 41 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 42 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.12 3.19 7.74 -2.91 -0.02 3.17 16 45 H 0.14 3.13 6.30 -2.91 -0.02 3.12 16 Total: -1.00 -81.11 381.69 0.95 -80.17 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.97 Total: 19.72 kcal Atomic # 6 Polarization: -63.77 SS G_CDS: 4.49 Total: -59.28 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -0.98 Total: -85.22 kcal Atomic # 8 Polarization: -94.80 SS G_CDS: -5.24 Total: -100.04 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 99.41 SS G_CDS: -0.32 Total: 99.09 kcal Total: -81.11 0.95 -80.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104107675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.575 kcal (2) G-P(sol) polarization free energy of solvation -81.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds