Wall clock time and date at job start Tue Mar 31 2020 23:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 116.99931 * 2 1 4 4 C 1.38738 * 120.05355 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.93932 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05554 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94107 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.00002 * 341.09862 * 7 6 5 9 9 C 1.54326 * 109.88228 * 102.19546 * 7 6 5 10 10 C 1.55161 * 102.94452 * 141.60981 * 9 7 6 11 11 C 1.55129 * 101.48340 * 324.33672 * 10 9 7 12 12 N 1.47023 * 109.88500 * 220.00513 * 7 6 5 13 13 S 1.65594 * 125.64907 * 61.60495 * 12 7 6 14 14 O 1.42102 * 104.27534 * 333.93114 * 13 12 7 15 15 O 1.42108 * 104.27870 * 206.07558 * 13 12 7 16 16 C 1.81391 * 104.45143 * 90.00271 * 13 12 7 17 17 C 1.53004 * 109.47414 * 179.97438 * 16 13 12 18 18 C 1.50700 * 109.47208 * 179.97438 * 17 16 13 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 270.00126 * 22 20 18 24 24 H 1.48496 * 109.47029 * 30.00143 * 22 20 18 25 25 H 1.48499 * 109.47352 * 149.99973 * 22 20 18 26 26 C 1.38261 * 120.11764 * 0.25896 * 6 5 4 27 27 C 1.38149 * 120.05182 * 359.44670 * 26 6 5 28 28 H 1.08997 * 109.47081 * 299.99896 * 1 2 3 29 29 H 1.08997 * 109.47111 * 59.99795 * 1 2 3 30 30 H 1.09004 * 109.46798 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.03100 * 0.04838 * 4 3 2 32 32 H 1.08003 * 119.97058 * 180.02562 * 5 4 3 33 33 H 1.09003 * 110.72064 * 259.97453 * 9 7 6 34 34 H 1.08997 * 110.72174 * 23.24694 * 9 7 6 35 35 H 1.09002 * 111.00111 * 82.57290 * 10 9 7 36 36 H 1.08996 * 111.00726 * 206.38591 * 10 9 7 37 37 H 1.09003 * 110.49334 * 278.44981 * 11 10 9 38 38 H 1.09003 * 110.34325 * 156.06081 * 11 10 9 39 39 H 1.09000 * 109.47478 * 59.99882 * 16 13 12 40 40 H 1.08998 * 109.47401 * 300.00003 * 16 13 12 41 41 H 1.08994 * 109.47074 * 60.00211 * 17 16 13 42 42 H 1.08998 * 109.47285 * 300.00046 * 17 16 13 43 43 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 44 44 H 1.07997 * 119.97567 * 179.70486 * 26 6 5 45 45 H 1.08001 * 120.02994 * 180.25377 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6757 0.0016 7 6 3.9860 5.0185 0.0028 8 1 5.0186 4.9105 0.3349 9 6 3.9516 5.6263 -1.4153 10 6 3.7077 7.1340 -1.1415 11 6 2.7675 7.0758 0.0911 12 7 3.2691 5.9443 0.8920 13 16 3.0544 5.7453 2.5218 14 8 3.1206 4.3390 2.7149 15 8 1.8659 6.4692 2.8098 16 6 4.4924 6.5589 3.2705 17 6 4.4086 6.4425 4.7938 18 6 5.6037 7.1179 5.4157 19 1 6.3482 7.5840 4.7873 20 6 5.7465 7.1409 6.7868 21 7 4.8401 6.5729 7.5520 22 14 7.2274 7.9787 7.5578 23 1 8.3299 6.9952 7.7082 24 1 7.6748 9.0942 6.6855 25 1 6.8549 8.5128 8.8924 26 6 1.9211 3.6048 0.0070 27 6 1.2915 2.3751 0.0003 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.0209 0.3800 0.0002 32 1 5.1345 2.5751 0.0011 33 1 4.9045 5.4757 -1.9227 34 1 3.1328 5.2026 -1.9968 35 1 4.6409 7.6434 -0.9015 36 1 3.2118 7.6096 -1.9876 37 1 1.7393 6.8931 -0.2215 38 1 2.8325 8.0025 0.6613 39 1 4.5030 7.6113 2.9869 40 1 5.4056 6.0788 2.9187 41 1 4.3980 5.3902 5.0777 42 1 3.4956 6.9229 5.1452 43 1 4.0709 6.1382 7.1516 44 1 1.3342 4.5114 0.0122 45 1 0.2129 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104107680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:11 Heat of formation + Delta-G solvation = -112.929020 kcal Electronic energy + Delta-G solvation = -28015.976606 eV Core-core repulsion = 24124.629971 eV Total energy + Delta-G solvation = -3891.346636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25844 -39.88902 -38.28873 -37.75789 -37.07542 -36.33700 -33.02371 -32.25535 -32.09177 -31.82161 -29.00523 -27.70272 -27.12960 -24.30506 -23.95246 -23.31424 -22.45045 -21.82518 -19.89296 -19.36699 -19.09728 -18.46016 -17.88529 -17.21546 -17.07838 -16.66668 -16.53494 -16.01161 -15.68525 -15.46423 -15.24947 -14.97046 -14.85563 -14.68630 -14.39092 -14.18322 -14.01529 -13.97011 -13.40661 -13.32579 -13.25380 -13.18139 -12.89996 -12.78523 -12.69641 -12.48801 -12.34735 -12.26432 -12.03130 -12.00679 -11.90317 -11.79852 -11.66383 -11.52037 -10.83669 -10.65762 -10.05947 -9.93922 -9.01910 -8.78736 -6.53169 -0.84333 0.39994 0.43163 1.51308 1.61045 1.67828 1.78547 2.36095 2.52497 2.74736 2.77487 3.01615 3.06112 3.63420 3.67436 3.77966 3.84663 3.85932 3.93885 4.03210 4.18638 4.26713 4.31944 4.32631 4.45625 4.47429 4.52657 4.61206 4.66237 4.70243 4.79700 4.93299 4.95533 4.96688 5.01055 5.05657 5.09984 5.19753 5.26099 5.36566 5.40777 5.49445 5.71262 5.77079 5.82010 6.03688 6.40229 6.42500 7.30378 8.60529 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.003330 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.017995 B = 8405.306450 C = 9419.828940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.109 3.891 4 C -0.163 4.163 5 C -0.072 4.072 6 C -0.131 4.131 7 C 0.185 3.815 8 H 0.095 0.905 9 C -0.108 4.108 10 C -0.119 4.119 11 C 0.105 3.895 12 N -1.005 6.005 13 S 2.624 3.376 14 O -0.975 6.975 15 O -0.996 6.996 16 C -0.586 4.586 17 C 0.006 3.994 18 C -0.614 4.614 19 H 0.068 0.932 20 C -0.042 4.042 21 N -0.935 5.935 22 Si 1.126 2.874 23 H -0.269 1.269 24 H -0.261 1.261 25 H -0.283 1.283 26 C -0.080 4.080 27 C -0.217 4.217 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.153 0.847 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.001 0.999 42 H -0.001 1.001 43 H 0.254 0.746 44 H 0.119 0.881 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 -4.768 -25.068 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.063 3.937 4 C -0.181 4.181 5 C -0.090 4.090 6 C -0.133 4.133 7 C 0.080 3.920 8 H 0.112 0.888 9 C -0.147 4.147 10 C -0.157 4.157 11 C -0.019 4.019 12 N -0.843 5.843 13 S 2.722 3.278 14 O -0.965 6.965 15 O -0.986 6.986 16 C -0.717 4.717 17 C -0.032 4.032 18 C -0.652 4.652 19 H 0.086 0.914 20 C -0.240 4.240 21 N -0.571 5.571 22 Si 0.945 3.055 23 H -0.194 1.194 24 H -0.186 1.186 25 H -0.208 1.208 26 C -0.098 4.098 27 C -0.236 4.236 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.159 0.841 32 H 0.170 0.830 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.019 0.981 42 H 0.017 0.983 43 H 0.063 0.937 44 H 0.137 0.863 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.051 -5.059 -23.156 23.898 hybrid contribution -1.081 -0.219 -0.769 1.344 sum -4.132 -5.277 -23.925 24.846 Atomic orbital electron populations 1.23305 0.76817 1.05540 1.01868 1.86019 1.23201 1.26818 1.88872 1.19231 0.92957 0.84406 0.97059 1.20649 0.91529 0.99369 1.06568 1.21056 1.00940 0.90566 0.96429 1.20209 0.93921 0.95821 1.03331 1.20489 0.94523 0.84781 0.92252 0.88753 1.22709 1.04589 0.94991 0.92423 1.22864 1.00000 0.96215 0.96666 1.22373 0.98752 0.87614 0.93205 1.58595 1.69965 1.33120 1.22632 1.04416 0.76329 0.74169 0.72855 1.93549 1.87675 1.30326 1.84933 1.93491 1.45293 1.75621 1.84204 1.30339 1.20203 1.14530 1.06646 1.18960 0.98190 0.96313 0.89771 1.22339 1.08595 1.39572 0.94731 0.91404 1.27714 1.04611 0.96215 0.95425 1.70899 1.11841 1.35373 1.39018 0.82855 0.71257 0.76064 0.75334 1.19436 1.18566 1.20821 1.20826 0.94712 0.97053 0.97223 1.21380 1.00742 0.92355 1.09083 0.92963 0.91448 0.85950 0.84051 0.82969 0.87398 0.90134 0.89353 0.87486 0.91094 0.90486 0.84482 0.84250 0.98052 0.98251 0.93707 0.86323 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -8.37 10.50 -92.46 -0.97 -9.34 16 3 C 0.11 2.98 6.69 22.51 0.15 3.13 16 4 C -0.16 -4.23 9.99 22.37 0.22 -4.00 16 5 C -0.07 -1.75 9.67 22.25 0.22 -1.54 16 6 C -0.13 -3.38 3.30 -19.85 -0.07 -3.44 16 7 C 0.18 3.95 3.25 44.60 0.14 4.09 16 8 H 0.09 1.79 8.02 -2.39 -0.02 1.77 16 9 C -0.11 -1.42 6.45 31.79 0.21 -1.21 16 10 C -0.12 -1.41 7.10 32.06 0.23 -1.18 16 11 C 0.10 2.06 6.90 86.93 0.60 2.66 16 12 N -1.00 -26.26 2.58 -487.69 -1.26 -27.52 16 13 S 2.62 98.47 5.61 -56.49 -0.32 98.16 16 14 O -0.97 -41.81 15.81 -127.65 -2.02 -43.83 16 15 O -1.00 -43.24 17.60 -127.65 -2.25 -45.49 16 16 C -0.59 -23.25 6.12 71.98 0.44 -22.81 16 17 C 0.01 0.35 4.29 29.85 0.13 0.47 16 18 C -0.61 -35.04 9.11 25.60 0.23 -34.81 16 19 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 20 C -0.04 -2.47 5.46 84.65 0.46 -2.01 16 21 N -0.93 -59.39 13.65 21.45 0.29 -59.10 16 22 Si 1.13 49.62 29.90 68.60 2.05 51.67 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 C -0.08 -2.20 8.76 22.25 0.19 -2.01 16 27 C -0.22 -5.82 9.04 22.37 0.20 -5.62 16 28 H 0.05 0.90 7.66 -2.39 -0.02 0.88 16 29 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 30 H 0.12 1.36 8.14 -2.38 -0.02 1.35 16 31 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.15 2.83 8.04 -2.91 -0.02 2.80 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.05 7.77 -2.39 -0.02 1.03 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 40 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 41 H 0.00 0.07 8.01 -2.39 -0.02 0.05 16 42 H 0.00 -0.04 8.01 -2.39 -0.02 -0.06 16 43 H 0.25 16.50 7.22 -92.70 -0.67 15.83 16 44 H 0.12 3.15 7.72 -2.91 -0.02 3.13 16 45 H 0.14 3.09 6.30 -2.91 -0.02 3.07 16 Total: -1.00 -82.50 380.24 1.08 -81.42 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 1.07 Total: 20.87 kcal Atomic # 6 Polarization: -71.32 SS G_CDS: 4.47 Total: -66.85 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -0.97 Total: -86.61 kcal Atomic # 8 Polarization: -93.42 SS G_CDS: -5.24 Total: -98.66 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.67 kcal Atomic # 16 Polarization: 98.47 SS G_CDS: -0.32 Total: 98.16 kcal Total: -82.50 1.08 -81.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104107680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.511 kcal (2) G-P(sol) polarization free energy of solvation -82.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds