Wall clock time and date at job start Tue Mar 31 2020 23:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35893 * 117.00392 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94337 * 180.30421 * 4 3 2 6 6 C 1.38271 * 120.05803 * 359.41293 * 5 4 3 7 7 C 1.50698 * 119.94467 * 180.30180 * 6 5 4 8 8 N 1.46501 * 109.47469 * 270.30588 * 7 6 5 9 9 C 1.46499 * 120.00230 * 84.99754 * 8 7 6 10 10 C 1.53001 * 117.49578 * 8.75428 * 9 8 7 11 11 C 1.53001 * 117.50031 * 300.09325 * 9 8 7 12 12 S 1.65599 * 120.00012 * 265.00198 * 8 7 6 13 13 O 1.42098 * 104.27853 * 206.06966 * 12 8 7 14 14 O 1.42101 * 104.27563 * 333.92975 * 12 8 7 15 15 C 1.81403 * 104.44978 * 89.99425 * 12 8 7 16 16 C 1.53006 * 109.47103 * 180.02562 * 15 12 8 17 17 C 1.50691 * 109.47177 * 180.02562 * 16 15 12 18 18 H 1.08011 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00220 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00098 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00233 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47036 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47261 * 119.99576 * 21 19 17 24 24 H 1.48491 * 109.47166 * 239.99759 * 21 19 17 25 25 C 1.38259 * 120.10889 * 0.60974 * 6 5 4 26 26 C 1.38146 * 120.05909 * 359.67363 * 25 6 5 27 27 H 1.09002 * 109.46729 * 299.99846 * 1 2 3 28 28 H 1.09001 * 109.47001 * 59.99870 * 1 2 3 29 29 H 1.08992 * 109.47458 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.02291 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.96766 * 179.69880 * 5 4 3 32 32 H 1.09000 * 109.47353 * 30.30435 * 7 6 5 33 33 H 1.09002 * 109.47057 * 150.30403 * 7 6 5 34 34 H 1.09000 * 115.55083 * 154.41941 * 9 8 7 35 35 H 1.08995 * 117.50324 * 359.97438 * 10 9 8 36 36 H 1.09000 * 117.50288 * 145.02302 * 10 9 8 37 37 H 1.08999 * 117.49600 * 214.97993 * 11 9 8 38 38 H 1.08997 * 117.49914 * 359.97228 * 11 9 8 39 39 H 1.08996 * 109.47323 * 300.00182 * 15 12 8 40 40 H 1.09004 * 109.46771 * 60.00307 * 15 12 8 41 41 H 1.09003 * 109.46866 * 300.00525 * 16 15 12 42 42 H 1.09003 * 109.46944 * 59.99929 * 16 15 12 43 43 H 0.96996 * 120.00352 * 179.97438 * 20 19 17 44 44 H 1.08006 * 119.97147 * 179.69573 * 25 6 5 45 45 H 1.07993 * 120.03340 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0058 6 6 3.3020 3.6757 0.0005 7 6 3.9862 5.0184 0.0005 8 7 4.2090 5.4530 1.3818 9 6 5.3991 5.0035 2.1082 10 6 6.4707 4.2544 1.3137 11 6 5.5811 3.4968 2.3026 12 16 3.1154 6.4522 2.1219 13 8 3.8777 7.1391 3.1050 14 8 2.5001 7.1535 1.0501 15 6 1.9313 5.3246 2.9076 16 6 0.8570 6.1376 3.6328 17 6 -0.1263 5.2009 4.2859 18 1 0.0020 4.1325 4.1928 19 6 -1.1902 5.7077 5.0016 20 7 -1.3467 7.0085 5.1146 21 14 -2.4095 4.5465 5.8107 22 1 -2.0130 3.1422 5.5355 23 1 -2.4179 4.7807 7.2770 24 1 -3.7671 4.7936 5.2622 25 6 1.9212 3.6047 0.0014 26 6 1.2916 2.3751 0.0010 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.0209 0.3798 -0.0014 31 1 5.1346 2.5748 0.0103 32 1 4.9438 4.9383 -0.5140 33 1 3.3579 5.7464 -0.5126 34 1 5.7346 5.6588 2.9120 35 1 6.2901 4.0956 0.2506 36 1 7.5113 4.4164 1.5950 37 1 6.0366 3.1610 3.2341 38 1 4.8151 2.8401 1.8904 39 1 1.4627 4.7016 2.1459 40 1 2.4538 4.6911 3.6244 41 1 1.3254 6.7610 4.3944 42 1 0.3347 6.7709 2.9156 43 1 -2.0954 7.3651 5.6178 44 1 1.3343 4.5114 0.0022 45 1 0.2130 2.3202 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104108339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:21 Heat of formation + Delta-G solvation = -51.538208 kcal Electronic energy + Delta-G solvation = -28444.152192 eV Core-core repulsion = 24555.467662 eV Total energy + Delta-G solvation = -3888.684530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.37593 -38.81786 -37.14660 -36.57780 -35.46837 -33.89555 -33.59432 -31.29120 -31.01764 -30.52804 -27.67364 -25.79265 -25.40038 -22.83417 -22.47438 -22.11464 -21.59014 -20.70283 -18.61740 -18.29439 -17.74873 -16.66119 -16.34243 -16.16663 -15.83758 -15.77920 -15.19928 -15.13776 -14.69097 -14.54517 -14.22596 -13.92078 -13.63273 -13.33197 -13.19334 -12.65734 -12.52280 -12.38643 -12.32756 -11.94766 -11.75701 -11.73842 -11.63461 -11.55691 -11.19578 -11.11020 -11.04839 -10.99641 -10.93085 -10.78479 -10.43525 -10.38662 -10.36094 -9.74361 -9.27522 -8.99188 -8.62507 -8.51464 -8.20232 -6.13290 -4.18334 0.71357 1.26174 1.30197 2.94209 3.15692 3.23182 3.30690 3.33849 3.68927 3.76623 4.26980 4.37156 4.48243 4.64839 4.74147 4.76731 4.83410 4.90265 4.95771 4.96794 5.02785 5.06559 5.21972 5.23074 5.31665 5.35583 5.45101 5.49599 5.64723 5.67950 5.74896 5.80038 5.90123 5.95852 6.06284 6.15094 6.25801 6.30284 6.51318 6.51852 6.64860 6.70419 7.27423 7.29974 7.35801 7.80332 8.17674 8.85306 9.46231 10.97867 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008195 B = 0.005257 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.798163 B = 5325.156924 C = 7786.683722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.320 6.320 3 C 0.130 3.870 4 C -0.156 4.156 5 C -0.069 4.069 6 C -0.149 4.149 7 C 0.153 3.847 8 N -0.972 5.972 9 C 0.084 3.916 10 C -0.185 4.185 11 C -0.209 4.209 12 S 2.589 3.411 13 O -0.963 6.963 14 O -0.963 6.963 15 C -0.588 4.588 16 C 0.029 3.971 17 C -0.516 4.516 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.069 4.069 26 C -0.201 4.201 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.132 0.868 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.479 -11.856 -12.221 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.233 6.233 3 C 0.085 3.915 4 C -0.175 4.175 5 C -0.087 4.087 6 C -0.151 4.151 7 C 0.028 3.972 8 N -0.803 5.803 9 C -0.023 4.023 10 C -0.224 4.224 11 C -0.248 4.248 12 S 2.689 3.311 13 O -0.954 6.954 14 O -0.954 6.954 15 C -0.722 4.722 16 C -0.010 4.010 17 C -0.555 4.555 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.088 4.088 26 C -0.219 4.219 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.150 0.850 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.512 -10.895 -12.196 19.999 hybrid contribution -1.257 -1.220 0.679 1.879 sum 10.255 -12.116 -11.517 19.611 Atomic orbital electron populations 1.23091 0.78154 1.03897 1.01853 1.86037 1.21606 1.27038 1.88644 1.19079 0.92393 0.84157 0.95918 1.20375 0.91329 0.98507 1.07282 1.20927 0.99944 0.90944 0.96894 1.20236 0.93865 0.95895 1.05091 1.20266 1.01474 0.92695 0.82763 1.57391 1.34617 1.67039 1.21284 1.21526 0.88062 0.93938 0.98795 1.23309 0.96283 1.04561 0.98227 1.23853 1.03474 0.96106 1.01365 1.05762 0.75025 0.75831 0.74461 1.93519 1.68945 1.71133 1.61767 1.93522 1.77474 1.70372 1.54016 1.30550 1.14365 1.15070 1.12189 1.18961 0.91519 0.95030 0.95466 1.21017 1.09048 0.92811 1.32655 0.92070 1.25054 0.97900 0.95221 0.96257 1.69960 1.30635 1.11194 1.41086 0.86451 0.80914 0.80895 0.79267 1.19698 1.20753 1.20811 1.21054 0.94030 0.97811 0.95873 1.21287 1.00463 0.92141 1.08026 0.92124 0.92556 0.88324 0.85311 0.84860 0.89149 0.87650 0.84024 0.88153 0.88075 0.88280 0.86975 0.86230 0.86155 0.94935 0.94966 0.92601 0.85025 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.83 10.50 -19.40 -0.20 -4.03 16 3 C 0.13 1.62 6.69 -39.21 -0.26 1.36 16 4 C -0.16 -1.74 9.99 -39.43 -0.39 -2.14 16 5 C -0.07 -0.72 6.54 -39.61 -0.26 -0.98 16 6 C -0.15 -1.78 5.10 -104.60 -0.53 -2.31 16 7 C 0.15 1.82 5.32 -5.19 -0.03 1.80 16 8 N -0.97 -13.62 3.05 -108.57 -0.33 -13.95 16 9 C 0.08 1.02 6.36 -67.93 -0.43 0.59 16 10 C -0.19 -1.64 9.19 -26.69 -0.25 -1.89 16 11 C -0.21 -2.14 9.49 -26.69 -0.25 -2.40 16 12 S 2.59 48.11 5.43 -107.50 -0.58 47.53 16 13 O -0.96 -20.38 16.75 -57.54 -0.96 -21.35 16 14 O -0.96 -19.77 16.53 -57.54 -0.95 -20.72 16 15 C -0.59 -11.69 6.12 37.16 0.23 -11.46 16 16 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 17 C -0.52 -14.22 9.11 -34.45 -0.31 -14.54 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 21 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.07 -0.91 7.99 -39.61 -0.32 -1.23 16 26 C -0.20 -2.56 9.04 -39.43 -0.36 -2.91 16 27 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 28 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.13 1.11 5.31 -52.48 -0.28 0.83 16 32 H 0.09 0.84 6.01 -51.93 -0.31 0.53 16 33 H 0.11 1.32 6.76 -51.93 -0.35 0.97 16 34 H 0.14 1.81 7.28 -51.93 -0.38 1.43 16 35 H 0.10 0.79 4.82 -51.93 -0.25 0.54 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.11 1.21 4.48 -51.93 -0.23 0.98 16 39 H 0.12 2.19 5.88 -51.93 -0.31 1.88 16 40 H 0.12 2.23 8.14 -51.92 -0.42 1.81 16 41 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.13 1.77 7.69 -52.48 -0.40 1.37 16 45 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -34.39 370.39 -10.29 -44.67 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.14 Total: 4.57 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: -2.41 Total: -32.73 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.41 Total: -39.62 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -2.12 Total: -46.10 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 48.11 SS G_CDS: -0.58 Total: 47.53 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.39 -10.29 -44.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104108339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.866 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds