Wall clock time and date at job start Tue Mar 31 2020 23:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35893 * 117.00392 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94337 * 180.30421 * 4 3 2 6 6 C 1.38271 * 120.05803 * 359.41293 * 5 4 3 7 7 C 1.50698 * 119.94467 * 180.30180 * 6 5 4 8 8 N 1.46501 * 109.47469 * 270.30588 * 7 6 5 9 9 C 1.46499 * 120.00230 * 84.99754 * 8 7 6 10 10 C 1.53001 * 117.49578 * 8.75428 * 9 8 7 11 11 C 1.53001 * 117.50031 * 300.09325 * 9 8 7 12 12 S 1.65599 * 120.00012 * 265.00198 * 8 7 6 13 13 O 1.42098 * 104.27853 * 206.06966 * 12 8 7 14 14 O 1.42101 * 104.27563 * 333.92975 * 12 8 7 15 15 C 1.81403 * 104.44978 * 89.99425 * 12 8 7 16 16 C 1.53006 * 109.47103 * 180.02562 * 15 12 8 17 17 C 1.50691 * 109.47177 * 180.02562 * 16 15 12 18 18 H 1.08011 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00220 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00098 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00233 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47036 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47261 * 119.99576 * 21 19 17 24 24 H 1.48491 * 109.47166 * 239.99759 * 21 19 17 25 25 C 1.38259 * 120.10889 * 0.60974 * 6 5 4 26 26 C 1.38146 * 120.05909 * 359.67363 * 25 6 5 27 27 H 1.09002 * 109.46729 * 299.99846 * 1 2 3 28 28 H 1.09001 * 109.47001 * 59.99870 * 1 2 3 29 29 H 1.08992 * 109.47458 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.02291 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.96766 * 179.69880 * 5 4 3 32 32 H 1.09000 * 109.47353 * 30.30435 * 7 6 5 33 33 H 1.09002 * 109.47057 * 150.30403 * 7 6 5 34 34 H 1.09000 * 115.55083 * 154.41941 * 9 8 7 35 35 H 1.08995 * 117.50324 * 359.97438 * 10 9 8 36 36 H 1.09000 * 117.50288 * 145.02302 * 10 9 8 37 37 H 1.08999 * 117.49600 * 214.97993 * 11 9 8 38 38 H 1.08997 * 117.49914 * 359.97228 * 11 9 8 39 39 H 1.08996 * 109.47323 * 300.00182 * 15 12 8 40 40 H 1.09004 * 109.46771 * 60.00307 * 15 12 8 41 41 H 1.09003 * 109.46866 * 300.00525 * 16 15 12 42 42 H 1.09003 * 109.46944 * 59.99929 * 16 15 12 43 43 H 0.96996 * 120.00352 * 179.97438 * 20 19 17 44 44 H 1.08006 * 119.97147 * 179.69573 * 25 6 5 45 45 H 1.07993 * 120.03340 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0058 6 6 3.3020 3.6757 0.0005 7 6 3.9862 5.0184 0.0005 8 7 4.2090 5.4530 1.3818 9 6 5.3991 5.0035 2.1082 10 6 6.4707 4.2544 1.3137 11 6 5.5811 3.4968 2.3026 12 16 3.1154 6.4522 2.1219 13 8 3.8777 7.1391 3.1050 14 8 2.5001 7.1535 1.0501 15 6 1.9313 5.3246 2.9076 16 6 0.8570 6.1376 3.6328 17 6 -0.1263 5.2009 4.2859 18 1 0.0020 4.1325 4.1928 19 6 -1.1902 5.7077 5.0016 20 7 -1.3467 7.0085 5.1146 21 14 -2.4095 4.5465 5.8107 22 1 -2.0130 3.1422 5.5355 23 1 -2.4179 4.7807 7.2770 24 1 -3.7671 4.7936 5.2622 25 6 1.9212 3.6047 0.0014 26 6 1.2916 2.3751 0.0010 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.0209 0.3798 -0.0014 31 1 5.1346 2.5748 0.0103 32 1 4.9438 4.9383 -0.5140 33 1 3.3579 5.7464 -0.5126 34 1 5.7346 5.6588 2.9120 35 1 6.2901 4.0956 0.2506 36 1 7.5113 4.4164 1.5950 37 1 6.0366 3.1610 3.2341 38 1 4.8151 2.8401 1.8904 39 1 1.4627 4.7016 2.1459 40 1 2.4538 4.6911 3.6244 41 1 1.3254 6.7610 4.3944 42 1 0.3347 6.7709 2.9156 43 1 -2.0954 7.3651 5.6178 44 1 1.3343 4.5114 0.0022 45 1 0.2130 2.3202 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104108339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:20 Heat of formation + Delta-G solvation = -74.280672 kcal Electronic energy + Delta-G solvation = -28445.138379 eV Core-core repulsion = 24555.467662 eV Total energy + Delta-G solvation = -3889.670717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26186 -39.71492 -38.38463 -37.81693 -37.07950 -35.93132 -34.56054 -33.17841 -32.03109 -31.48824 -28.45650 -27.65613 -26.50688 -23.80627 -23.64485 -23.12715 -22.87515 -21.82197 -19.87188 -19.25346 -19.17817 -18.46741 -17.58622 -17.24210 -17.00597 -16.65980 -16.58258 -16.45251 -16.33252 -15.66655 -15.25105 -15.08704 -14.77531 -14.51861 -14.45482 -14.09617 -13.75679 -13.55689 -13.52991 -13.26575 -13.25710 -13.10852 -12.97522 -12.83376 -12.69952 -12.64254 -12.31827 -12.16034 -12.09817 -11.95965 -11.82201 -11.75108 -11.65569 -11.29193 -11.10197 -10.68162 -9.90185 -9.70376 -9.11851 -8.28440 -6.42366 -0.77920 0.34736 0.36674 1.37279 1.38209 1.51274 1.66194 2.35019 2.36614 2.73248 2.77014 2.96705 3.04654 3.12673 3.68826 3.81287 3.85590 3.88470 3.97237 4.04526 4.08869 4.16330 4.20459 4.28775 4.35864 4.38027 4.44931 4.59952 4.69052 4.70728 4.71760 4.76293 4.97722 5.05123 5.13975 5.22456 5.22807 5.26649 5.30384 5.37936 5.38725 5.57018 5.65380 5.70306 5.79384 6.03982 6.40957 6.70285 7.27556 8.84152 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008195 B = 0.005257 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.798163 B = 5325.156924 C = 7786.683722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.119 3.881 4 C -0.158 4.158 5 C -0.056 4.056 6 C -0.153 4.153 7 C 0.148 3.852 8 N -0.959 5.959 9 C 0.044 3.956 10 C -0.152 4.152 11 C -0.205 4.205 12 S 2.611 3.389 13 O -0.992 6.992 14 O -0.987 6.987 15 C -0.589 4.589 16 C 0.025 3.975 17 C -0.534 4.534 18 H 0.070 0.930 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.275 1.275 25 C -0.090 4.090 26 C -0.215 4.215 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.005 0.995 42 H 0.007 0.993 43 H 0.268 0.732 44 H 0.117 0.883 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.251 -14.723 -13.027 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.074 3.926 4 C -0.176 4.176 5 C -0.074 4.074 6 C -0.155 4.155 7 C 0.024 3.976 8 N -0.793 5.793 9 C -0.062 4.062 10 C -0.191 4.191 11 C -0.244 4.244 12 S 2.710 3.290 13 O -0.982 6.982 14 O -0.978 6.978 15 C -0.720 4.720 16 C -0.013 4.013 17 C -0.573 4.573 18 H 0.088 0.912 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.795 3.205 22 H -0.182 1.182 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.109 4.109 26 C -0.234 4.234 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.167 0.833 31 H 0.180 0.820 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.023 0.977 42 H 0.025 0.975 43 H 0.077 0.923 44 H 0.135 0.865 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.269 -13.774 -12.994 23.122 hybrid contribution -1.736 -0.365 0.867 1.975 sum 11.532 -14.139 -12.127 21.908 Atomic orbital electron populations 1.23298 0.76905 1.05512 1.01869 1.86022 1.22988 1.26842 1.88588 1.19312 0.93168 0.84119 0.96024 1.20703 0.90972 0.99600 1.06323 1.21174 1.01155 0.89910 0.95198 1.20250 0.93335 0.96448 1.05446 1.20516 1.03246 0.92425 0.81431 1.56943 1.33816 1.66767 1.21789 1.21755 0.88783 0.95267 1.00431 1.23484 0.96320 1.00600 0.98695 1.23901 1.03778 0.94137 1.02589 1.04772 0.74775 0.75752 0.73702 1.93473 1.69391 1.72279 1.63088 1.93483 1.78426 1.71421 1.54439 1.30472 1.13766 1.15180 1.12595 1.18788 0.92828 0.95062 0.94654 1.21449 1.09636 0.93509 1.32729 0.91155 1.26076 1.00079 0.96930 0.96856 1.70100 1.31634 1.13409 1.42127 0.85305 0.78124 0.79043 0.78053 1.18166 1.20221 1.20081 1.21092 0.94954 0.97511 0.97302 1.21376 1.00857 0.92375 1.08749 0.92923 0.91756 0.85949 0.83305 0.81982 0.85453 0.88730 0.85223 0.86418 0.85893 0.87253 0.87284 0.84903 0.84909 0.97692 0.97509 0.92322 0.86504 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -7.42 10.50 -92.34 -0.97 -8.39 16 3 C 0.12 2.80 6.69 22.51 0.15 2.95 16 4 C -0.16 -3.07 9.99 22.37 0.22 -2.84 16 5 C -0.06 -0.99 6.54 22.25 0.15 -0.84 16 6 C -0.15 -3.38 5.10 -19.85 -0.10 -3.48 16 7 C 0.15 3.25 5.32 85.63 0.46 3.71 16 8 N -0.96 -25.83 3.05 -497.41 -1.52 -27.35 16 9 C 0.04 0.97 6.36 44.99 0.29 1.26 16 10 C -0.15 -2.02 9.19 30.62 0.28 -1.74 16 11 C -0.21 -3.51 9.49 30.62 0.29 -3.22 16 12 S 2.61 99.74 5.43 -56.49 -0.31 99.44 16 13 O -0.99 -43.34 16.75 -127.65 -2.14 -45.48 16 14 O -0.99 -42.03 16.53 -127.65 -2.11 -44.14 16 15 C -0.59 -24.16 6.12 71.98 0.44 -23.72 16 16 C 0.03 1.38 4.98 29.85 0.15 1.53 16 17 C -0.53 -30.22 9.11 25.60 0.23 -29.99 16 18 H 0.07 3.74 7.74 -2.90 -0.02 3.72 16 19 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 20 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 21 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 C -0.09 -2.36 7.99 22.25 0.18 -2.18 16 26 C -0.21 -5.43 9.04 22.37 0.20 -5.23 16 27 H 0.05 0.96 7.66 -2.39 -0.02 0.94 16 28 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 31 H 0.16 1.87 5.31 -2.91 -0.02 1.85 16 32 H 0.13 1.87 6.01 -2.39 -0.01 1.85 16 33 H 0.09 2.32 6.76 -2.39 -0.02 2.31 16 34 H 0.13 3.20 7.28 -2.39 -0.02 3.18 16 35 H 0.12 1.16 4.82 -2.39 -0.01 1.15 16 36 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.11 1.97 4.48 -2.39 -0.01 1.96 16 39 H 0.13 5.03 5.88 -2.39 -0.01 5.01 16 40 H 0.13 5.01 8.14 -2.39 -0.02 4.99 16 41 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.12 3.33 7.69 -2.91 -0.02 3.31 16 45 H 0.13 3.14 6.30 -2.91 -0.02 3.12 16 Total: -1.00 -76.90 370.39 0.79 -76.12 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 1.01 Total: 23.02 kcal Atomic # 6 Polarization: -66.47 SS G_CDS: 4.51 Total: -61.96 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -1.23 Total: -84.23 kcal Atomic # 8 Polarization: -92.80 SS G_CDS: -5.22 Total: -98.02 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 99.74 SS G_CDS: -0.31 Total: 99.44 kcal Total: -76.90 0.79 -76.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104108339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.835 kcal (2) G-P(sol) polarization free energy of solvation -76.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds