Wall clock time and date at job start Tue Mar 31 2020 23:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 116.99890 * 2 1 4 4 C 1.38752 * 120.05595 * 0.02570 * 3 2 1 5 5 C 1.38122 * 119.94079 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05633 * 359.74723 * 5 4 3 7 7 C 1.38242 * 120.11420 * 0.50380 * 6 5 4 8 8 C 1.50698 * 119.97447 * 179.76694 * 7 6 5 9 9 H 1.08997 * 109.99821 * 199.36270 * 8 7 6 10 10 C 1.54327 * 109.87855 * 78.27494 * 8 7 6 11 11 C 1.55165 * 102.94078 * 218.38768 * 10 8 7 12 12 C 1.54915 * 101.57980 * 35.50135 * 11 10 8 13 13 N 1.47022 * 109.88394 * 320.46541 * 8 7 6 14 14 S 1.65597 * 125.64521 * 298.32038 * 13 8 7 15 15 O 1.42108 * 104.27584 * 206.07265 * 14 13 8 16 16 O 1.42090 * 104.27957 * 333.92676 * 14 13 8 17 17 C 1.81401 * 104.44845 * 90.00306 * 14 13 8 18 18 C 1.53001 * 109.46778 * 179.97438 * 17 14 13 19 19 C 1.50704 * 109.46897 * 180.02562 * 18 17 14 20 20 H 1.07995 * 119.99772 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99817 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00165 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99616 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46920 * 60.00268 * 23 21 19 25 25 H 1.48503 * 109.46903 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47471 * 299.99942 * 23 21 19 27 27 C 1.38168 * 120.05157 * 359.49749 * 7 6 5 28 28 H 1.08997 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46865 * 300.00102 * 1 2 3 30 30 H 1.08997 * 109.47220 * 59.99379 * 1 2 3 31 31 H 1.07993 * 120.02900 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.96988 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.94586 * 180.27418 * 6 5 4 34 34 H 1.08993 * 110.72079 * 336.74924 * 10 8 7 35 35 H 1.09002 * 110.72173 * 100.02761 * 10 8 7 36 36 H 1.08995 * 111.00547 * 153.57467 * 11 10 8 37 37 H 1.09001 * 111.00003 * 277.43047 * 11 10 8 38 38 H 1.08997 * 110.36462 * 204.15099 * 12 11 10 39 39 H 1.08999 * 110.46102 * 81.87572 * 12 11 10 40 40 H 1.08998 * 109.46630 * 299.99576 * 17 14 13 41 41 H 1.08993 * 109.47098 * 59.99735 * 17 14 13 42 42 H 1.09008 * 109.47195 * 299.99211 * 18 17 14 43 43 H 1.08993 * 109.47489 * 60.00016 * 18 17 14 44 44 H 0.96998 * 119.99872 * 179.97438 * 22 21 19 45 45 H 1.08005 * 120.02455 * 180.23596 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0560 2.5171 0.0006 8 6 5.5608 2.5982 0.0011 9 1 5.9850 1.6550 -0.3432 10 6 6.0689 2.9138 1.4237 11 6 7.2514 3.8841 1.1631 12 6 6.7350 4.6821 -0.0602 13 7 6.0028 3.6942 -0.8735 14 16 5.7251 3.8008 -2.5026 15 8 6.7905 4.6065 -2.9877 16 8 5.5776 2.4513 -2.9220 17 6 4.1468 4.6850 -2.6357 18 6 3.7769 4.8489 -4.1112 19 6 2.4660 5.5840 -4.2219 20 1 1.9483 5.9021 -3.3291 21 6 1.9272 5.8496 -5.4629 22 7 2.5574 5.4618 -6.5501 23 14 0.3019 6.7601 -5.6000 24 1 0.4301 8.0990 -4.9706 25 1 -0.0570 6.9193 -7.0322 26 1 -0.7590 5.9866 -4.9063 27 6 3.4311 1.2848 0.0000 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.2129 2.3204 0.0005 32 1 1.3340 4.5114 0.0019 33 1 3.7923 4.6380 0.0112 34 1 5.2916 3.4022 2.0113 35 1 6.4161 2.0071 1.9192 36 1 7.4135 4.5408 2.0177 37 1 8.1600 3.3350 0.9161 38 1 7.5714 5.0935 -0.6252 39 1 6.0656 5.4802 0.2605 40 1 3.3682 4.1171 -2.1265 41 1 4.2408 5.6677 -2.1737 42 1 4.5557 5.4171 -4.6201 43 1 3.6831 3.8664 -4.5736 44 1 2.1781 5.6483 -7.4231 45 1 4.0207 0.3799 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104109495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:15 Heat of formation + Delta-G solvation = -84.462345 kcal Electronic energy + Delta-G solvation = -28613.930294 eV Core-core repulsion = 24723.818066 eV Total energy + Delta-G solvation = -3890.112228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34255 -38.92426 -36.95440 -36.49580 -35.37865 -33.85708 -31.84597 -31.24615 -30.93617 -30.26238 -27.97281 -27.19067 -25.54992 -23.13427 -22.57987 -21.72804 -21.40577 -20.72587 -18.67986 -17.82195 -17.34976 -16.45460 -16.39953 -16.13978 -15.76435 -15.66735 -15.41941 -15.07017 -14.55194 -14.25326 -13.86783 -13.72005 -13.45700 -13.43847 -13.22377 -12.83226 -12.48315 -12.45835 -12.24812 -11.88897 -11.69511 -11.59634 -11.50358 -11.46347 -11.32023 -11.19254 -11.13356 -11.02288 -10.95063 -10.80656 -10.68626 -10.40506 -10.29313 -9.73604 -9.33857 -8.87066 -8.70021 -8.48147 -8.09994 -6.09795 -4.14811 0.78604 1.29579 1.49743 3.05096 3.25772 3.26763 3.31680 3.33266 3.76469 4.30296 4.32180 4.40482 4.53634 4.63074 4.81750 4.88520 4.93775 5.02941 5.08505 5.10422 5.23354 5.25223 5.31801 5.37574 5.40583 5.50451 5.55233 5.64845 5.70901 5.74007 5.76246 5.80883 5.86076 6.02058 6.07365 6.17066 6.32304 6.49401 6.50621 6.56846 6.67228 6.75639 7.33755 7.38736 7.40508 7.82934 8.21064 8.87876 9.49099 11.01441 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.005292 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.319187 B = 5289.673601 C = 7556.879306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.202 4.202 5 C -0.074 4.074 6 C -0.145 4.145 7 C -0.076 4.076 8 C 0.194 3.806 9 H 0.090 0.910 10 C -0.118 4.118 11 C -0.128 4.128 12 C 0.113 3.887 13 N -1.011 6.011 14 S 2.600 3.400 15 O -0.965 6.965 16 O -0.958 6.958 17 C -0.594 4.594 18 C 0.031 3.969 19 C -0.515 4.515 20 H 0.060 0.940 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.898 3.102 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.276 1.276 27 C -0.131 4.131 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.031 0.969 43 H 0.031 0.969 44 H 0.265 0.735 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -6.278 20.100 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.081 3.919 4 C -0.221 4.221 5 C -0.092 4.092 6 C -0.164 4.164 7 C -0.077 4.077 8 C 0.088 3.912 9 H 0.108 0.892 10 C -0.156 4.156 11 C -0.167 4.167 12 C -0.012 4.012 13 N -0.847 5.847 14 S 2.700 3.300 15 O -0.955 6.955 16 O -0.948 6.948 17 C -0.728 4.728 18 C -0.008 4.008 19 C -0.555 4.555 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.202 1.202 27 C -0.151 4.151 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.324 -6.823 19.136 20.449 hybrid contribution -1.878 0.987 -0.011 2.122 sum 0.446 -5.836 19.125 20.001 Atomic orbital electron populations 1.23050 0.78487 1.03775 1.01482 1.86052 1.21315 1.26982 1.88833 1.18937 0.92190 0.84149 0.96667 1.21261 1.00087 0.92430 1.08317 1.20956 0.94477 0.97255 0.96473 1.20975 0.93834 0.98296 1.03269 1.20042 0.95614 0.92740 0.99350 1.20129 0.88979 0.91150 0.90960 0.89187 1.22692 0.98050 1.00273 0.94628 1.22768 0.98159 0.98144 0.97595 1.22036 0.95978 0.91100 0.92111 1.59018 1.69057 1.30686 1.25905 1.05431 0.77974 0.75475 0.71091 1.93527 1.52806 1.71717 1.77473 1.93533 1.87852 1.34351 1.79102 1.30728 1.18840 1.12626 1.10573 1.18933 0.98825 0.98812 0.84239 1.20929 1.05048 1.37039 0.92454 0.92148 1.25054 0.97763 0.95848 0.95773 1.69943 1.38980 1.46136 0.97858 0.86561 0.83546 0.80187 0.77147 1.20100 1.21084 1.20163 1.20174 0.91337 0.97998 1.05553 0.88385 0.92801 0.92370 0.85478 0.85368 0.85449 0.90188 0.90025 0.90001 0.90531 0.89721 0.91644 0.85383 0.86412 0.95055 0.95039 0.92522 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.18 10.50 -19.43 -0.20 -4.38 16 3 C 0.13 1.76 6.69 -39.22 -0.26 1.50 16 4 C -0.20 -2.67 9.04 -39.43 -0.36 -3.03 16 5 C -0.07 -0.98 9.77 -39.61 -0.39 -1.37 16 6 C -0.15 -1.96 6.01 -39.56 -0.24 -2.20 16 7 C -0.08 -1.03 4.56 -104.65 -0.48 -1.51 16 8 C 0.19 2.44 2.94 -68.10 -0.20 2.24 16 9 H 0.09 1.16 8.02 -51.93 -0.42 0.74 16 10 C -0.12 -1.04 6.46 -24.89 -0.16 -1.20 16 11 C -0.13 -1.06 7.09 -24.57 -0.17 -1.24 16 12 C 0.11 1.26 7.07 -2.53 -0.02 1.25 16 13 N -1.01 -14.61 2.58 -105.63 -0.27 -14.88 16 14 S 2.60 50.86 5.35 -107.50 -0.58 50.29 16 15 O -0.96 -21.14 17.28 -57.54 -0.99 -22.13 16 16 O -0.96 -21.39 17.60 -57.54 -1.01 -22.40 16 17 C -0.59 -12.08 4.89 37.16 0.18 -11.90 16 18 C 0.03 0.81 4.98 -27.88 -0.14 0.68 16 19 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 23 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 C -0.13 -1.84 9.62 -39.43 -0.38 -2.22 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.41 7.66 -51.92 -0.40 0.01 16 30 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 31 H 0.13 1.40 6.30 -52.49 -0.33 1.07 16 32 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.13 1.56 7.26 -52.48 -0.38 1.18 16 34 H 0.08 0.66 7.78 -51.93 -0.40 0.26 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.00 7.67 -51.93 -0.40 0.60 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.13 2.48 5.16 -51.93 -0.27 2.21 16 41 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 42 H 0.03 0.87 8.14 -51.92 -0.42 0.44 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.13 1.67 8.04 -52.48 -0.42 1.25 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -35.91 375.73 -10.47 -46.38 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.76 Total: 2.12 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: -2.03 Total: -30.86 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.46 Total: -40.95 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -2.21 Total: -48.92 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 50.86 SS G_CDS: -0.58 Total: 50.29 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.91 -10.47 -46.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104109495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.078 kcal (2) G-P(sol) polarization free energy of solvation -35.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds