Wall clock time and date at job start Tue Mar 31 2020 23:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 116.99890 * 2 1 4 4 C 1.38752 * 120.05595 * 0.02570 * 3 2 1 5 5 C 1.38122 * 119.94079 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05633 * 359.74723 * 5 4 3 7 7 C 1.38242 * 120.11420 * 0.50380 * 6 5 4 8 8 C 1.50698 * 119.97447 * 179.76694 * 7 6 5 9 9 H 1.08997 * 109.99821 * 199.36270 * 8 7 6 10 10 C 1.54327 * 109.87855 * 78.27494 * 8 7 6 11 11 C 1.55165 * 102.94078 * 218.38768 * 10 8 7 12 12 C 1.54915 * 101.57980 * 35.50135 * 11 10 8 13 13 N 1.47022 * 109.88394 * 320.46541 * 8 7 6 14 14 S 1.65597 * 125.64521 * 298.32038 * 13 8 7 15 15 O 1.42108 * 104.27584 * 206.07265 * 14 13 8 16 16 O 1.42090 * 104.27957 * 333.92676 * 14 13 8 17 17 C 1.81401 * 104.44845 * 90.00306 * 14 13 8 18 18 C 1.53001 * 109.46778 * 179.97438 * 17 14 13 19 19 C 1.50704 * 109.46897 * 180.02562 * 18 17 14 20 20 H 1.07995 * 119.99772 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99817 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00165 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99616 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46920 * 60.00268 * 23 21 19 25 25 H 1.48503 * 109.46903 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47471 * 299.99942 * 23 21 19 27 27 C 1.38168 * 120.05157 * 359.49749 * 7 6 5 28 28 H 1.08997 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46865 * 300.00102 * 1 2 3 30 30 H 1.08997 * 109.47220 * 59.99379 * 1 2 3 31 31 H 1.07993 * 120.02900 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.96988 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.94586 * 180.27418 * 6 5 4 34 34 H 1.08993 * 110.72079 * 336.74924 * 10 8 7 35 35 H 1.09002 * 110.72173 * 100.02761 * 10 8 7 36 36 H 1.08995 * 111.00547 * 153.57467 * 11 10 8 37 37 H 1.09001 * 111.00003 * 277.43047 * 11 10 8 38 38 H 1.08997 * 110.36462 * 204.15099 * 12 11 10 39 39 H 1.08999 * 110.46102 * 81.87572 * 12 11 10 40 40 H 1.08998 * 109.46630 * 299.99576 * 17 14 13 41 41 H 1.08993 * 109.47098 * 59.99735 * 17 14 13 42 42 H 1.09008 * 109.47195 * 299.99211 * 18 17 14 43 43 H 1.08993 * 109.47489 * 60.00016 * 18 17 14 44 44 H 0.96998 * 119.99872 * 179.97438 * 22 21 19 45 45 H 1.08005 * 120.02455 * 180.23596 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0560 2.5171 0.0006 8 6 5.5608 2.5982 0.0011 9 1 5.9850 1.6550 -0.3432 10 6 6.0689 2.9138 1.4237 11 6 7.2514 3.8841 1.1631 12 6 6.7350 4.6821 -0.0602 13 7 6.0028 3.6942 -0.8735 14 16 5.7251 3.8008 -2.5026 15 8 6.7905 4.6065 -2.9877 16 8 5.5776 2.4513 -2.9220 17 6 4.1468 4.6850 -2.6357 18 6 3.7769 4.8489 -4.1112 19 6 2.4660 5.5840 -4.2219 20 1 1.9483 5.9021 -3.3291 21 6 1.9272 5.8496 -5.4629 22 7 2.5574 5.4618 -6.5501 23 14 0.3019 6.7601 -5.6000 24 1 0.4301 8.0990 -4.9706 25 1 -0.0570 6.9193 -7.0322 26 1 -0.7590 5.9866 -4.9063 27 6 3.4311 1.2848 0.0000 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.2129 2.3204 0.0005 32 1 1.3340 4.5114 0.0019 33 1 3.7923 4.6380 0.0112 34 1 5.2916 3.4022 2.0113 35 1 6.4161 2.0071 1.9192 36 1 7.4135 4.5408 2.0177 37 1 8.1600 3.3350 0.9161 38 1 7.5714 5.0935 -0.6252 39 1 6.0656 5.4802 0.2605 40 1 3.3682 4.1171 -2.1265 41 1 4.2408 5.6677 -2.1737 42 1 4.5557 5.4171 -4.6201 43 1 3.6831 3.8664 -4.5736 44 1 2.1781 5.6483 -7.4231 45 1 4.0207 0.3799 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104109495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:15 Heat of formation + Delta-G solvation = -108.775159 kcal Electronic energy + Delta-G solvation = -28614.984577 eV Core-core repulsion = 24723.818066 eV Total energy + Delta-G solvation = -3891.166511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31480 -39.86321 -38.27461 -37.81503 -37.06926 -35.90562 -33.18935 -32.81496 -31.93041 -31.26753 -28.90681 -27.99479 -27.56568 -24.24800 -23.70151 -23.23300 -22.45186 -21.75339 -19.94568 -19.31265 -18.65760 -18.16083 -17.52833 -17.12986 -17.03066 -16.83743 -16.63224 -16.53913 -16.32920 -15.36009 -15.11876 -14.89191 -14.67544 -14.50572 -14.40282 -14.11920 -13.84319 -13.65454 -13.37287 -13.30244 -13.20257 -13.08232 -12.91095 -12.85974 -12.72046 -12.61884 -12.34538 -12.24272 -12.17825 -11.99095 -11.88899 -11.76385 -11.66646 -11.47593 -11.19456 -10.64522 -10.06829 -9.76355 -9.12188 -8.25708 -6.39788 -0.77959 0.27502 0.46749 1.39219 1.43239 1.51268 1.70769 2.35860 2.37649 2.74440 2.78872 3.04688 3.07733 3.61536 3.67153 3.83604 3.89669 4.00145 4.09808 4.17469 4.19402 4.27660 4.36576 4.38957 4.39551 4.56606 4.59460 4.66334 4.72128 4.72487 4.90335 4.98070 5.01823 5.04701 5.09770 5.20095 5.22971 5.24151 5.32463 5.36588 5.49036 5.54048 5.65244 5.67441 5.78321 6.05464 6.44279 6.72758 7.29964 8.86841 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.005292 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.319187 B = 5289.673601 C = 7556.879306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.114 3.886 4 C -0.210 4.210 5 C -0.083 4.083 6 C -0.157 4.157 7 C -0.081 4.081 8 C 0.186 3.814 9 H 0.082 0.918 10 C -0.107 4.107 11 C -0.117 4.117 12 C 0.098 3.902 13 N -1.004 6.004 14 S 2.618 3.382 15 O -0.993 6.993 16 O -0.993 6.993 17 C -0.590 4.590 18 C 0.027 3.973 19 C -0.532 4.532 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.936 5.936 23 Si 0.974 3.026 24 H -0.261 1.261 25 H -0.285 1.285 26 H -0.262 1.262 27 C -0.152 4.152 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.004 0.996 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -5.302 22.992 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.068 3.932 4 C -0.229 4.229 5 C -0.101 4.101 6 C -0.175 4.175 7 C -0.082 4.082 8 C 0.080 3.920 9 H 0.100 0.900 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.026 4.026 13 N -0.843 5.843 14 S 2.718 3.282 15 O -0.984 6.984 16 O -0.984 6.984 17 C -0.722 4.722 18 C -0.012 4.012 19 C -0.571 4.571 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.576 5.576 23 Si 0.797 3.203 24 H -0.185 1.185 25 H -0.211 1.211 26 H -0.187 1.187 27 C -0.171 4.171 28 H 0.138 0.862 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.023 0.977 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.202 -5.843 22.036 22.829 hybrid contribution -1.506 0.610 -0.854 1.836 sum -0.303 -5.233 21.182 21.821 Atomic orbital electron populations 1.23335 0.76573 1.05564 1.02122 1.86029 1.23386 1.26812 1.88758 1.19144 0.92473 0.84824 0.96721 1.21529 1.01174 0.92186 1.08007 1.21254 0.94769 0.97950 0.96168 1.21181 0.94131 0.98711 1.03507 1.20182 0.96163 0.92750 0.99154 1.20421 0.88606 0.90150 0.92828 0.90030 1.22709 0.98399 1.01508 0.91940 1.22790 0.97707 0.98006 0.97045 1.22457 0.96048 0.91441 0.92676 1.58561 1.69064 1.32245 1.24405 1.04456 0.77090 0.74220 0.72388 1.93482 1.53514 1.72196 1.79179 1.93481 1.88057 1.35953 1.80874 1.30627 1.20175 1.14735 1.06636 1.18768 0.98160 0.96458 0.87839 1.21416 1.05594 1.36819 0.93282 0.90411 1.26126 1.02006 0.96728 0.95328 1.70107 1.41186 1.47742 0.98568 0.85373 0.78461 0.79258 0.77231 1.18520 1.21075 1.18702 1.20400 0.91865 0.98528 1.06313 0.86167 0.91094 0.92701 0.83627 0.83829 0.84245 0.89046 0.87968 0.86792 0.90359 0.90637 0.89362 0.84249 0.83774 0.97744 0.98367 0.92439 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -8.64 10.50 -92.44 -0.97 -9.61 16 3 C 0.11 3.13 6.69 22.51 0.15 3.28 16 4 C -0.21 -5.30 9.04 22.37 0.20 -5.10 16 5 C -0.08 -2.09 9.77 22.25 0.22 -1.88 16 6 C -0.16 -3.98 6.01 22.28 0.13 -3.84 16 7 C -0.08 -2.13 4.56 -19.88 -0.09 -2.22 16 8 C 0.19 4.42 2.94 44.60 0.13 4.56 16 9 H 0.08 2.07 8.02 -2.39 -0.02 2.05 16 10 C -0.11 -1.54 6.46 31.79 0.21 -1.33 16 11 C -0.12 -1.52 7.09 31.99 0.23 -1.30 16 12 C 0.10 1.96 7.07 86.86 0.61 2.57 16 13 N -1.00 -27.99 2.58 -488.12 -1.26 -29.25 16 14 S 2.62 104.35 5.35 -56.49 -0.30 104.05 16 15 O -0.99 -44.57 17.28 -127.65 -2.21 -46.77 16 16 O -0.99 -46.06 17.60 -127.65 -2.25 -48.31 16 17 C -0.59 -24.08 4.89 71.98 0.35 -23.73 16 18 C 0.03 1.45 4.98 29.85 0.15 1.60 16 19 C -0.53 -29.82 9.11 25.60 0.23 -29.58 16 20 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 21 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 22 N -0.94 -57.92 13.29 21.45 0.28 -57.63 16 23 Si 0.97 43.34 29.54 68.60 2.03 45.36 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 27 C -0.15 -4.23 9.62 22.37 0.22 -4.02 16 28 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 0.95 7.66 -2.38 -0.02 0.93 16 30 H 0.05 0.96 7.66 -2.39 -0.02 0.94 16 31 H 0.15 2.96 6.30 -2.91 -0.02 2.94 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.14 3.08 7.26 -2.91 -0.02 3.06 16 34 H 0.09 1.16 7.78 -2.39 -0.02 1.15 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.67 7.67 -2.39 -0.02 1.65 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.14 5.36 5.16 -2.39 -0.01 5.35 16 41 H 0.14 5.01 8.14 -2.39 -0.02 4.99 16 42 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 43 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.14 3.49 8.04 -2.91 -0.02 3.46 16 Total: -1.00 -80.50 375.73 0.62 -79.88 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.98 Total: 21.59 kcal Atomic # 6 Polarization: -63.62 SS G_CDS: 4.31 Total: -59.31 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -0.97 Total: -86.88 kcal Atomic # 8 Polarization: -99.27 SS G_CDS: -5.42 Total: -104.70 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 104.35 SS G_CDS: -0.30 Total: 104.05 kcal Total: -80.50 0.62 -79.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104109495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.894 kcal (2) G-P(sol) polarization free energy of solvation -80.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds