Wall clock time and date at job start Tue Mar 31 2020 23:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99951 * 2 1 4 4 C 1.38728 * 120.05289 * 179.97438 * 3 2 1 5 5 C 1.38153 * 119.94179 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05351 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.93977 * 180.02562 * 6 5 4 8 8 H 1.09000 * 110.78568 * 3.24209 * 7 6 5 9 9 C 1.55405 * 110.85075 * 126.53895 * 7 6 5 10 10 C 1.54914 * 101.66697 * 153.69831 * 9 7 6 11 11 N 1.47426 * 104.82992 * 323.07703 * 10 9 7 12 12 S 1.65606 * 125.64620 * 204.16562 * 11 10 9 13 13 O 1.42102 * 104.27772 * 26.02693 * 12 11 10 14 14 O 1.42099 * 104.27736 * 153.88628 * 12 11 10 15 15 C 1.81394 * 104.44648 * 269.95574 * 12 11 10 16 16 C 1.53003 * 109.47172 * 179.97438 * 15 12 11 17 17 C 1.50699 * 109.47343 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99903 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00164 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00147 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99851 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47318 * 89.99862 * 21 19 17 23 23 H 1.48501 * 109.47536 * 209.99903 * 21 19 17 24 24 H 1.48507 * 109.47051 * 329.99832 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 11 10 9 26 26 C 1.38264 * 120.11408 * 0.29312 * 6 5 4 27 27 C 1.38150 * 120.05254 * 359.45418 * 26 6 5 28 28 H 1.08996 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46911 * 300.00612 * 1 2 3 30 30 H 1.09005 * 109.46590 * 60.00414 * 1 2 3 31 31 H 1.08001 * 120.03131 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.97267 * 179.97438 * 5 4 3 33 33 H 1.09000 * 110.89538 * 35.62635 * 9 7 6 34 34 H 1.09000 * 111.06973 * 271.84478 * 9 7 6 35 35 H 1.08999 * 110.37121 * 204.23438 * 10 9 7 36 36 H 1.09003 * 110.36718 * 81.91343 * 10 9 7 37 37 H 1.09000 * 109.47526 * 299.99791 * 15 12 11 38 38 H 1.09002 * 109.47489 * 60.00332 * 15 12 11 39 39 H 1.08993 * 109.47137 * 300.00124 * 16 15 12 40 40 H 1.09003 * 109.46599 * 60.00446 * 16 15 12 41 41 H 0.97001 * 119.99624 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.88241 * 118.36067 * 25 11 10 43 43 H 1.09000 * 109.88049 * 239.37196 * 25 11 10 44 44 H 1.07996 * 119.97633 * 179.70795 * 26 6 5 45 45 H 1.08000 * 120.02480 * 180.24762 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0005 7 6 3.9861 5.0185 0.0005 8 1 5.0683 4.9012 -0.0566 9 6 3.4673 5.9037 -1.1667 10 6 3.7151 7.3291 -0.6129 11 7 3.4192 7.2308 0.8280 12 16 2.9678 8.4868 1.8085 13 8 2.3554 9.4174 0.9263 14 8 2.2263 7.8684 2.8511 15 6 4.5320 9.1482 2.4457 16 6 4.2453 10.3289 3.3757 17 6 5.5448 10.8780 3.9056 18 1 6.4815 10.4296 3.6091 19 6 5.5379 11.9523 4.7698 20 7 6.6719 12.4313 5.2327 21 14 3.9177 12.7266 5.2843 22 1 3.4153 12.0552 6.5099 23 1 4.1249 14.1709 5.5609 24 1 2.9248 12.5695 4.1913 25 6 3.5904 5.8330 1.2502 26 6 1.9211 3.6048 0.0056 27 6 1.2916 2.3751 -0.0002 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 4.0209 0.3799 0.0014 32 1 5.1346 2.5751 0.0019 33 1 2.4054 5.7320 -1.3425 34 1 4.0444 5.7318 -2.0753 35 1 3.0442 8.0434 -1.0901 36 1 4.7538 7.6211 -0.7679 37 1 5.0577 8.3694 2.9981 38 1 5.1506 9.4839 1.6133 39 1 3.7199 11.1075 2.8230 40 1 3.6267 9.9936 4.2082 41 1 6.6670 13.1873 5.8404 42 1 4.3780 5.7663 2.0008 43 1 2.6548 5.4523 1.6598 44 1 1.3342 4.5114 0.0099 45 1 0.2130 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104113568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:52 Heat of formation + Delta-G solvation = -86.461477 kcal Electronic energy + Delta-G solvation = -26849.292983 eV Core-core repulsion = 22959.094066 eV Total energy + Delta-G solvation = -3890.198917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.58626 -39.08477 -37.20224 -36.73897 -35.57702 -33.94974 -32.36898 -31.48297 -31.35556 -29.84124 -28.56147 -27.15176 -25.96300 -23.51172 -22.81970 -22.12812 -21.13746 -20.38175 -18.71251 -18.50169 -17.72984 -17.02112 -16.86760 -16.08162 -16.02566 -15.70609 -15.47709 -15.02837 -14.61788 -14.32422 -14.14045 -13.93429 -13.75768 -13.54364 -13.24083 -13.11562 -13.03221 -12.78435 -12.50165 -12.22243 -11.95109 -11.90679 -11.78431 -11.69416 -11.46820 -11.29992 -11.26209 -11.20130 -11.14959 -11.04648 -10.75956 -10.45037 -10.16004 -9.74140 -9.43086 -9.28606 -8.84143 -8.66818 -8.35207 -6.17059 -4.18302 0.59727 1.05773 1.10605 2.91254 2.93760 3.26194 3.33483 3.37641 3.41690 4.16735 4.22316 4.35330 4.36771 4.42221 4.52985 4.60643 4.73389 4.75923 4.77480 5.01547 5.04165 5.08072 5.11162 5.14637 5.18873 5.29540 5.40651 5.42278 5.50964 5.54858 5.62327 5.73073 5.74030 5.78659 5.92248 5.99544 6.06249 6.13946 6.28142 6.34666 6.43067 6.46748 6.81022 6.93358 7.05649 7.54184 8.36123 8.83982 9.42532 10.95272 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.002284 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.548145 B =12256.620265 C =12342.980223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.151 4.151 5 C -0.073 4.073 6 C -0.108 4.108 7 C -0.055 4.055 8 H 0.095 0.905 9 C -0.121 4.121 10 C 0.114 3.886 11 N -1.018 6.018 12 S 2.604 3.396 13 O -0.962 6.962 14 O -0.961 6.961 15 C -0.582 4.582 16 C -0.007 4.007 17 C -0.519 4.519 18 H 0.078 0.922 19 C 0.071 3.929 20 N -0.895 5.895 21 Si 0.870 3.130 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 C 0.126 3.874 26 C -0.071 4.071 27 C -0.205 4.205 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.266 0.734 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 -23.517 -14.911 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.091 4.091 6 C -0.109 4.109 7 C -0.074 4.074 8 H 0.113 0.887 9 C -0.159 4.159 10 C -0.012 4.012 11 N -0.855 5.855 12 S 2.703 3.297 13 O -0.952 6.952 14 O -0.952 6.952 15 C -0.715 4.715 16 C -0.047 4.047 17 C -0.558 4.558 18 H 0.096 0.904 19 C -0.132 4.132 20 N -0.533 5.533 21 Si 0.696 3.304 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.186 1.186 25 C 0.001 3.999 26 C -0.090 4.090 27 C -0.224 4.224 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.145 0.855 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.318 -23.242 -14.590 28.981 hybrid contribution -0.255 0.569 0.465 0.778 sum -9.573 -22.673 -14.125 28.377 Atomic orbital electron populations 1.23059 0.78342 1.03920 1.01478 1.86062 1.21436 1.27063 1.88785 1.19062 0.92433 0.84106 0.96720 1.20408 0.91323 0.98657 1.06555 1.20889 0.99882 0.90820 0.97513 1.19575 0.93424 0.94251 1.03637 1.21194 1.00193 0.90967 0.95075 0.88701 1.22944 1.02184 0.93415 0.97396 1.22043 1.01124 0.98047 0.79943 1.58827 1.86644 1.20556 1.19490 1.05309 0.78045 0.72834 0.73510 1.93538 1.74451 1.62564 1.64663 1.93542 1.69037 1.75183 1.57443 1.30338 1.19378 1.10649 1.11153 1.19415 1.00117 0.91291 0.93840 1.20842 0.91672 1.15328 1.27944 0.90417 1.24992 0.96442 0.96350 0.95385 1.69882 1.25680 1.25287 1.32468 0.86920 0.84500 0.79036 0.79967 1.19661 1.20732 1.18631 1.21781 1.01681 0.80234 0.96206 1.20865 0.94151 0.97188 0.96748 1.21231 1.00083 0.92271 1.08778 0.88268 0.92535 0.92637 0.85222 0.85112 0.90427 0.89776 0.89694 0.91317 0.85705 0.85646 0.94945 0.95411 0.92376 0.91293 0.90867 0.85493 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.90 10.50 -19.44 -0.20 -3.10 16 3 C 0.12 1.15 6.69 -39.22 -0.26 0.89 16 4 C -0.15 -1.33 9.99 -39.43 -0.39 -1.72 16 5 C -0.07 -0.60 9.68 -39.60 -0.38 -0.98 16 6 C -0.11 -0.96 4.93 -104.60 -0.52 -1.48 16 7 C -0.05 -0.47 3.18 -89.80 -0.29 -0.75 16 8 H 0.09 0.68 7.95 -51.93 -0.41 0.26 16 9 C -0.12 -0.99 6.47 -24.44 -0.16 -1.15 16 10 C 0.11 1.18 7.08 -2.53 -0.02 1.17 16 11 N -1.02 -13.29 3.62 -111.42 -0.40 -13.70 16 12 S 2.60 45.06 5.65 -107.50 -0.61 44.46 16 13 O -0.96 -18.92 17.28 -57.54 -0.99 -19.92 16 14 O -0.96 -19.11 17.60 -57.54 -1.01 -20.12 16 15 C -0.58 -10.76 6.12 37.16 0.23 -10.54 16 16 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 17 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 18 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 21 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 25 C 0.13 1.43 6.40 -3.07 -0.02 1.41 16 26 C -0.07 -0.66 8.14 -39.60 -0.32 -0.99 16 27 C -0.20 -1.83 9.04 -39.43 -0.36 -2.19 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.13 0.79 7.98 -52.49 -0.42 0.38 16 33 H 0.08 0.65 6.77 -51.93 -0.35 0.29 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.93 7.67 -51.93 -0.40 0.53 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 38 H 0.13 2.11 8.14 -51.92 -0.42 1.69 16 39 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 40 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.88 7.09 -51.93 -0.37 0.51 16 44 H 0.13 1.14 7.28 -52.49 -0.38 0.76 16 45 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -35.60 377.86 -10.23 -45.83 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.77 Total: -1.31 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -2.04 Total: -28.40 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.37 Total: -40.02 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -2.21 Total: -43.14 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 45.06 SS G_CDS: -0.61 Total: 44.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.60 -10.23 -45.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104113568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.632 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds