Wall clock time and date at job start Tue Mar 31 2020 23:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99951 * 2 1 4 4 C 1.38728 * 120.05289 * 179.97438 * 3 2 1 5 5 C 1.38153 * 119.94179 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05351 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.93977 * 180.02562 * 6 5 4 8 8 H 1.09000 * 110.78568 * 3.24209 * 7 6 5 9 9 C 1.55405 * 110.85075 * 126.53895 * 7 6 5 10 10 C 1.54914 * 101.66697 * 153.69831 * 9 7 6 11 11 N 1.47426 * 104.82992 * 323.07703 * 10 9 7 12 12 S 1.65606 * 125.64620 * 204.16562 * 11 10 9 13 13 O 1.42102 * 104.27772 * 26.02693 * 12 11 10 14 14 O 1.42099 * 104.27736 * 153.88628 * 12 11 10 15 15 C 1.81394 * 104.44648 * 269.95574 * 12 11 10 16 16 C 1.53003 * 109.47172 * 179.97438 * 15 12 11 17 17 C 1.50699 * 109.47343 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99903 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00164 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00147 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99851 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47318 * 89.99862 * 21 19 17 23 23 H 1.48501 * 109.47536 * 209.99903 * 21 19 17 24 24 H 1.48507 * 109.47051 * 329.99832 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 11 10 9 26 26 C 1.38264 * 120.11408 * 0.29312 * 6 5 4 27 27 C 1.38150 * 120.05254 * 359.45418 * 26 6 5 28 28 H 1.08996 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46911 * 300.00612 * 1 2 3 30 30 H 1.09005 * 109.46590 * 60.00414 * 1 2 3 31 31 H 1.08001 * 120.03131 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.97267 * 179.97438 * 5 4 3 33 33 H 1.09000 * 110.89538 * 35.62635 * 9 7 6 34 34 H 1.09000 * 111.06973 * 271.84478 * 9 7 6 35 35 H 1.08999 * 110.37121 * 204.23438 * 10 9 7 36 36 H 1.09003 * 110.36718 * 81.91343 * 10 9 7 37 37 H 1.09000 * 109.47526 * 299.99791 * 15 12 11 38 38 H 1.09002 * 109.47489 * 60.00332 * 15 12 11 39 39 H 1.08993 * 109.47137 * 300.00124 * 16 15 12 40 40 H 1.09003 * 109.46599 * 60.00446 * 16 15 12 41 41 H 0.97001 * 119.99624 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.88241 * 118.36067 * 25 11 10 43 43 H 1.09000 * 109.88049 * 239.37196 * 25 11 10 44 44 H 1.07996 * 119.97633 * 179.70795 * 26 6 5 45 45 H 1.08000 * 120.02480 * 180.24762 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0005 7 6 3.9861 5.0185 0.0005 8 1 5.0683 4.9012 -0.0566 9 6 3.4673 5.9037 -1.1667 10 6 3.7151 7.3291 -0.6129 11 7 3.4192 7.2308 0.8280 12 16 2.9678 8.4868 1.8085 13 8 2.3554 9.4174 0.9263 14 8 2.2263 7.8684 2.8511 15 6 4.5320 9.1482 2.4457 16 6 4.2453 10.3289 3.3757 17 6 5.5448 10.8780 3.9056 18 1 6.4815 10.4296 3.6091 19 6 5.5379 11.9523 4.7698 20 7 6.6719 12.4313 5.2327 21 14 3.9177 12.7266 5.2843 22 1 3.4153 12.0552 6.5099 23 1 4.1249 14.1709 5.5609 24 1 2.9248 12.5695 4.1913 25 6 3.5904 5.8330 1.2502 26 6 1.9211 3.6048 0.0056 27 6 1.2916 2.3751 -0.0002 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 4.0209 0.3799 0.0014 32 1 5.1346 2.5751 0.0019 33 1 2.4054 5.7320 -1.3425 34 1 4.0444 5.7318 -2.0753 35 1 3.0442 8.0434 -1.0901 36 1 4.7538 7.6211 -0.7679 37 1 5.0577 8.3694 2.9981 38 1 5.1506 9.4839 1.6133 39 1 3.7199 11.1075 2.8230 40 1 3.6267 9.9936 4.2082 41 1 6.6670 13.1873 5.8404 42 1 4.3780 5.7663 2.0008 43 1 2.6548 5.4523 1.6598 44 1 1.3342 4.5114 0.0099 45 1 0.2130 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104113568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:51 Heat of formation + Delta-G solvation = -110.694170 kcal Electronic energy + Delta-G solvation = -26850.343791 eV Core-core repulsion = 22959.094066 eV Total energy + Delta-G solvation = -3891.249725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21766 -39.80802 -38.22707 -37.90565 -37.06652 -35.90672 -33.48356 -33.14905 -31.98111 -30.61341 -29.21173 -27.91377 -27.71251 -24.26258 -23.68403 -23.00549 -22.73627 -21.08063 -19.98400 -19.38819 -19.10037 -18.52630 -17.73427 -17.08652 -17.02536 -16.62599 -16.53444 -16.33297 -15.90297 -15.40022 -15.30598 -14.84518 -14.74848 -14.63456 -14.40884 -14.05274 -13.91142 -13.81222 -13.74451 -13.27798 -13.22782 -13.12755 -13.08653 -12.97250 -12.74099 -12.68747 -12.44547 -12.24967 -12.00817 -11.95758 -11.81449 -11.72099 -11.66582 -11.41611 -11.29844 -10.85522 -9.96898 -9.86480 -9.00591 -8.37578 -6.43342 -0.78972 0.42583 0.44318 1.31177 1.32841 1.43069 1.69380 2.28543 2.40838 2.75668 2.78483 2.96066 3.08240 3.55295 3.75717 3.83434 3.90588 3.92784 4.01422 4.08822 4.29354 4.37854 4.38522 4.39936 4.44575 4.49693 4.54643 4.62889 4.65253 4.72604 4.80182 4.90906 4.97374 5.03210 5.05567 5.08122 5.13184 5.16866 5.27104 5.38986 5.44052 5.46121 5.47416 5.75180 5.85590 6.15642 6.46205 6.62418 7.20900 8.77845 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.002284 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.548145 B =12256.620265 C =12342.980223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.108 3.892 4 C -0.162 4.162 5 C -0.071 4.071 6 C -0.114 4.114 7 C -0.044 4.044 8 H 0.118 0.882 9 C -0.113 4.113 10 C 0.102 3.898 11 N -1.013 6.013 12 S 2.633 3.367 13 O -0.986 6.986 14 O -0.989 6.989 15 C -0.587 4.587 16 C -0.017 4.017 17 C -0.527 4.527 18 H 0.050 0.950 19 C 0.012 3.988 20 N -0.939 5.939 21 Si 0.925 3.075 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.250 1.250 25 C 0.115 3.885 26 C -0.083 4.083 27 C -0.213 4.213 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.032 0.968 40 H 0.030 0.970 41 H 0.270 0.730 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.125 0.875 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 -24.801 -16.148 30.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.063 3.937 4 C -0.181 4.181 5 C -0.088 4.088 6 C -0.115 4.115 7 C -0.064 4.064 8 H 0.136 0.864 9 C -0.152 4.152 10 C -0.022 4.022 11 N -0.852 5.852 12 S 2.731 3.269 13 O -0.976 6.976 14 O -0.979 6.979 15 C -0.718 4.718 16 C -0.056 4.056 17 C -0.566 4.566 18 H 0.068 0.932 19 C -0.186 4.186 20 N -0.578 5.578 21 Si 0.748 3.252 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.174 1.174 25 C -0.010 4.010 26 C -0.101 4.101 27 C -0.232 4.232 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.157 0.843 32 H 0.172 0.828 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.919 -24.520 -15.826 30.823 hybrid contribution -0.032 0.838 0.784 1.148 sum -9.951 -23.682 -15.042 29.768 Atomic orbital electron populations 1.23294 0.76776 1.05424 1.01999 1.86037 1.23181 1.27086 1.88799 1.19298 0.92992 0.84408 0.96979 1.20678 0.91391 0.99482 1.06547 1.21146 1.01051 0.90194 0.96449 1.19646 0.93285 0.94635 1.03941 1.21183 1.01433 0.90228 0.93570 0.86437 1.22956 1.02579 0.91528 0.98136 1.22378 1.02236 0.99551 0.78033 1.58447 1.86350 1.20187 1.20262 1.04139 0.76998 0.72796 0.72970 1.93502 1.74862 1.64133 1.65139 1.93502 1.69664 1.75735 1.59025 1.30334 1.21321 1.09249 1.10938 1.19377 0.97945 0.93330 0.94994 1.21157 0.92560 1.15171 1.27685 0.93214 1.25885 0.99938 0.97147 0.95649 1.70007 1.27949 1.26238 1.33634 0.86020 0.80429 0.78552 0.80206 1.18563 1.19784 1.17360 1.22038 1.01622 0.79286 0.98013 1.20979 0.94691 0.97244 0.97221 1.21392 1.00840 0.92141 1.08805 0.86368 0.92246 0.91856 0.84262 0.82794 0.90771 0.87108 0.90398 0.89257 0.84405 0.84177 0.94941 0.95215 0.92097 0.90417 0.92016 0.85714 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -5.82 10.50 -92.49 -0.97 -6.79 16 3 C 0.11 1.95 6.69 22.50 0.15 2.10 16 4 C -0.16 -2.61 9.99 22.37 0.22 -2.39 16 5 C -0.07 -0.98 9.68 22.26 0.22 -0.77 16 6 C -0.11 -1.79 4.93 -19.85 -0.10 -1.89 16 7 C -0.04 -0.63 3.18 -10.26 -0.03 -0.67 16 8 H 0.12 1.19 7.95 -2.39 -0.02 1.17 16 9 C -0.11 -1.52 6.47 32.08 0.21 -1.32 16 10 C 0.10 1.88 7.08 86.86 0.61 2.49 16 11 N -1.01 -24.66 3.62 -506.41 -1.83 -26.49 16 12 S 2.63 88.39 5.65 -56.49 -0.32 88.07 16 13 O -0.99 -37.88 17.28 -127.65 -2.21 -40.09 16 14 O -0.99 -38.63 17.60 -127.65 -2.25 -40.87 16 15 C -0.59 -21.17 6.12 71.98 0.44 -20.73 16 16 C -0.02 -0.82 4.05 29.85 0.12 -0.70 16 17 C -0.53 -29.90 9.66 25.60 0.25 -29.65 16 18 H 0.05 3.01 7.99 -2.91 -0.02 2.98 16 19 C 0.01 0.72 5.47 84.65 0.46 1.19 16 20 N -0.94 -57.78 13.96 21.45 0.30 -57.49 16 21 Si 0.93 44.07 27.47 68.60 1.88 45.95 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 25 C 0.12 2.38 6.40 86.73 0.55 2.94 16 26 C -0.08 -1.45 8.14 22.26 0.18 -1.27 16 27 C -0.21 -3.62 9.04 22.37 0.20 -3.41 16 28 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 30 H 0.06 0.51 7.66 -2.38 -0.02 0.49 16 31 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.15 1.35 7.98 -2.91 -0.02 1.32 16 33 H 0.07 1.07 6.77 -2.39 -0.02 1.05 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.56 7.67 -2.39 -0.02 1.54 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 38 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 39 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 40 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.42 7.09 -2.39 -0.02 1.41 16 44 H 0.12 2.15 7.28 -2.91 -0.02 2.13 16 45 H 0.14 1.87 6.30 -2.91 -0.02 1.85 16 Total: -1.00 -77.07 377.86 0.14 -76.94 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.93 Total: 13.55 kcal Atomic # 6 Polarization: -57.38 SS G_CDS: 4.60 Total: -52.78 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -1.53 Total: -83.98 kcal Atomic # 8 Polarization: -82.33 SS G_CDS: -5.42 Total: -87.75 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 16 Polarization: 88.39 SS G_CDS: -0.32 Total: 88.07 kcal Total: -77.07 0.14 -76.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104113568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.758 kcal (2) G-P(sol) polarization free energy of solvation -77.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds