Wall clock time and date at job start Tue Mar 31 2020 23:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 116.99985 * 2 1 4 4 C 1.38752 * 120.05282 * 0.25082 * 3 2 1 5 5 C 1.38127 * 119.94054 * 180.32351 * 4 3 2 6 6 C 1.38282 * 120.05498 * 359.67628 * 5 4 3 7 7 C 1.38249 * 120.11438 * 0.02621 * 6 5 4 8 8 C 1.38160 * 120.05241 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.02852 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.99612 * 147.99510 * 9 8 7 11 11 C 1.54308 * 109.77535 * 269.15429 * 9 8 7 12 12 C 1.55161 * 102.86334 * 141.87931 * 11 9 8 13 13 C 1.54902 * 101.58472 * 324.30504 * 12 11 9 14 14 N 1.47025 * 109.87798 * 26.90442 * 9 8 7 15 15 S 1.65593 * 125.65087 * 61.67859 * 14 9 8 16 16 O 1.42107 * 104.27632 * 211.72888 * 15 14 9 17 17 O 1.42103 * 104.27901 * 339.58341 * 15 14 9 18 18 C 1.81393 * 104.45151 * 95.65674 * 15 14 9 19 19 C 1.52999 * 109.47429 * 180.39085 * 18 15 14 20 20 C 1.50694 * 109.47395 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00125 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00063 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00187 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99953 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47146 * 60.00036 * 24 22 20 26 26 H 1.48500 * 109.47096 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46877 * 300.00031 * 24 22 20 28 28 H 1.08998 * 109.47248 * 60.00376 * 1 2 3 29 29 H 1.09000 * 109.46751 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47439 * 300.00012 * 1 2 3 31 31 H 1.08003 * 120.02893 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.97115 * 179.70040 * 5 4 3 33 33 H 1.08011 * 119.94460 * 180.02562 * 6 5 4 34 34 H 1.07994 * 119.97369 * 180.02562 * 7 6 5 35 35 H 1.09005 * 110.92932 * 23.47185 * 11 9 8 36 36 H 1.08995 * 110.74644 * 260.21339 * 11 9 8 37 37 H 1.09000 * 111.00254 * 206.22269 * 12 11 9 38 38 H 1.09004 * 110.99631 * 82.38058 * 12 11 9 39 39 H 1.08999 * 110.36598 * 278.16988 * 13 12 11 40 40 H 1.08997 * 110.37111 * 155.84030 * 13 12 11 41 41 H 1.09001 * 109.47192 * 300.39089 * 18 15 14 42 42 H 1.09002 * 109.47327 * 60.38956 * 18 15 14 43 43 H 1.08993 * 109.47099 * 300.00407 * 19 18 15 44 44 H 1.09010 * 109.46831 * 59.99963 * 19 18 15 45 45 H 0.97006 * 120.00068 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0053 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0068 7 6 4.0559 2.5171 -0.0058 8 6 3.4311 1.2849 -0.0001 9 6 4.2537 0.0222 0.0004 10 1 3.7314 -0.7627 0.5473 11 6 4.5154 -0.4310 -1.4513 12 6 5.9740 -0.9568 -1.3914 13 6 6.6164 0.0228 -0.3778 14 7 5.5620 0.2780 0.6205 15 16 5.8104 0.7653 2.1835 16 8 6.9838 1.5643 2.1192 17 8 4.5648 1.3235 2.5788 18 6 6.1356 -0.7716 3.0905 19 6 6.3743 -0.4514 4.5675 20 6 6.6439 -1.7283 5.3211 21 1 6.6453 -2.6736 4.7988 22 6 6.8887 -1.6897 6.6774 23 7 6.8865 -0.5387 7.3136 24 14 7.2236 -3.2725 7.6115 25 1 8.4277 -3.9343 7.0483 26 1 7.4539 -2.9618 9.0452 27 1 6.0548 -4.1794 7.4835 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2127 2.3203 0.0098 32 1 1.3339 4.5114 -0.0023 33 1 3.7921 4.6382 -0.0116 34 1 5.1343 2.5752 -0.0095 35 1 4.4364 0.4089 -2.1416 36 1 3.8294 -1.2285 -1.7364 37 1 6.4563 -0.8826 -2.3660 38 1 6.0051 -1.9807 -1.0188 39 1 6.9008 0.9503 -0.8747 40 1 7.4840 -0.4364 0.0959 41 1 5.2775 -1.4372 2.9971 42 1 7.0192 -1.2577 2.6768 43 1 7.2323 0.2141 4.6609 44 1 5.4906 0.0346 4.9813 45 1 7.0591 -0.5116 8.2678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111339042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:26 Heat of formation + Delta-G solvation = -81.224151 kcal Electronic energy + Delta-G solvation = -28436.413265 eV Core-core repulsion = 24546.441456 eV Total energy + Delta-G solvation = -3889.971809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.43998 -38.51564 -37.08608 -36.49005 -35.34097 -33.86133 -31.95264 -31.12009 -30.93093 -30.04100 -28.09241 -27.15848 -25.56525 -23.28213 -22.11939 -21.84237 -21.33953 -20.81829 -18.59795 -17.99746 -17.42702 -16.76814 -16.37686 -15.79983 -15.70110 -15.62320 -15.24152 -14.91643 -14.55215 -14.38862 -13.77446 -13.72261 -13.67942 -13.42038 -13.16411 -12.75896 -12.52709 -12.47001 -12.13408 -11.73707 -11.71470 -11.52295 -11.47293 -11.41079 -11.30574 -11.22387 -11.12207 -11.04775 -10.93466 -10.86070 -10.67412 -10.39557 -10.34501 -9.73533 -9.32664 -8.89654 -8.61606 -8.48025 -8.07138 -6.10083 -4.15705 0.79417 1.38735 1.52005 3.10534 3.23982 3.28636 3.33128 3.35211 3.80306 4.32354 4.35696 4.41188 4.57958 4.65183 4.81937 4.89881 4.94953 5.00414 5.05131 5.09484 5.24657 5.25047 5.32620 5.39293 5.44878 5.48703 5.64196 5.65552 5.72319 5.73281 5.74784 5.83503 5.88807 6.02789 6.10130 6.13983 6.38234 6.47588 6.52839 6.55894 6.68651 6.83126 7.32288 7.38169 7.38792 7.82625 8.20167 8.87311 9.48749 11.00974 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.003513 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.553303 B = 7967.825909 C = 8304.344130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.136 3.864 4 C -0.207 4.207 5 C -0.084 4.084 6 C -0.152 4.152 7 C -0.064 4.064 8 C -0.111 4.111 9 C 0.203 3.797 10 H 0.088 0.912 11 C -0.115 4.115 12 C -0.131 4.131 13 C 0.120 3.880 14 N -1.014 6.014 15 S 2.598 3.402 16 O -0.964 6.964 17 O -0.948 6.948 18 C -0.591 4.591 19 C 0.029 3.971 20 C -0.520 4.520 21 H 0.061 0.939 22 C 0.058 3.942 23 N -0.891 5.891 24 Si 0.900 3.100 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.889 2.119 -21.429 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.091 3.909 4 C -0.226 4.226 5 C -0.102 4.102 6 C -0.170 4.170 7 C -0.083 4.083 8 C -0.113 4.113 9 C 0.096 3.904 10 H 0.106 0.894 11 C -0.154 4.154 12 C -0.170 4.170 13 C -0.006 4.006 14 N -0.850 5.850 15 S 2.698 3.302 16 O -0.954 6.954 17 O -0.938 6.938 18 C -0.725 4.725 19 C -0.010 4.010 20 C -0.560 4.560 21 H 0.079 0.921 22 C -0.144 4.144 23 N -0.529 5.529 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.210 1.210 27 H -0.201 1.201 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.794 2.962 -20.885 23.257 hybrid contribution -0.033 -1.267 0.774 1.485 sum -9.827 1.695 -20.112 22.448 Atomic orbital electron populations 1.23029 0.78656 1.03794 1.01217 1.86046 1.21128 1.26884 1.88763 1.18651 0.91326 0.84227 0.96725 1.21122 0.99665 0.92392 1.09416 1.20862 0.94590 0.96825 0.97968 1.20999 0.93955 0.98266 1.03769 1.20764 0.99843 0.91231 0.96439 1.19388 0.90470 0.95901 1.05536 1.19919 0.82337 0.93514 0.94605 0.89410 1.22630 0.96885 1.01215 0.94637 1.22819 0.95406 0.99454 0.99333 1.21953 0.90109 0.98747 0.89747 1.59079 1.12129 1.85972 1.27807 1.05553 0.74351 0.78020 0.72288 1.93540 1.50587 1.66148 1.85143 1.93586 1.43236 1.76061 1.80947 1.30503 1.10262 1.19064 1.12622 1.18947 0.98428 0.99199 0.84411 1.20968 1.49557 0.92416 0.93029 0.92102 1.25066 0.95100 0.96588 0.97684 1.69948 1.48593 1.24638 1.09707 0.86530 0.78877 0.83130 0.78745 1.20053 1.21046 1.20071 0.92895 0.88341 0.92619 0.85650 0.86049 0.86020 0.85968 0.90623 0.89995 0.90095 0.90379 0.91402 0.90601 0.86279 0.86460 0.94983 0.94863 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -3.94 9.60 -19.44 -0.19 -4.13 16 3 C 0.14 1.90 6.66 -39.22 -0.26 1.64 16 4 C -0.21 -2.56 9.04 -39.43 -0.36 -2.92 16 5 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 6 C -0.15 -2.05 10.04 -39.56 -0.40 -2.45 16 7 C -0.06 -0.97 8.02 -39.61 -0.32 -1.29 16 8 C -0.11 -1.65 3.72 -104.47 -0.39 -2.04 16 9 C 0.20 2.75 2.96 -68.11 -0.20 2.54 16 10 H 0.09 1.22 7.63 -51.93 -0.40 0.82 16 11 C -0.11 -1.13 6.46 -24.90 -0.16 -1.29 16 12 C -0.13 -1.15 7.08 -24.58 -0.17 -1.33 16 13 C 0.12 1.39 6.96 -2.53 -0.02 1.37 16 14 N -1.01 -14.98 2.29 -105.64 -0.24 -15.22 16 15 S 2.60 50.31 5.12 -107.50 -0.55 49.76 16 16 O -0.96 -20.88 17.70 -57.54 -1.02 -21.90 16 17 O -0.95 -20.70 15.46 -57.54 -0.89 -21.59 16 18 C -0.59 -12.08 6.12 37.16 0.23 -11.85 16 19 C 0.03 0.78 4.98 -27.89 -0.14 0.64 16 20 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 21 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 24 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.05 0.35 7.67 -51.93 -0.40 -0.04 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 31 H 0.13 1.20 6.30 -52.48 -0.33 0.87 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.12 1.84 7.18 -52.49 -0.38 1.46 16 35 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.12 2.23 8.14 -51.92 -0.42 1.81 16 42 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -36.06 378.65 -10.39 -46.45 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.92 Total: 1.30 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: -2.00 Total: -30.65 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.49 Total: -41.41 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -2.09 Total: -47.62 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 50.31 SS G_CDS: -0.55 Total: 49.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.06 -10.39 -46.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111339042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.776 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds