Wall clock time and date at job start Tue Mar 31 2020 23:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 116.99985 * 2 1 4 4 C 1.38752 * 120.05282 * 0.25082 * 3 2 1 5 5 C 1.38127 * 119.94054 * 180.32351 * 4 3 2 6 6 C 1.38282 * 120.05498 * 359.67628 * 5 4 3 7 7 C 1.38249 * 120.11438 * 0.02621 * 6 5 4 8 8 C 1.38160 * 120.05241 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.02852 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.99612 * 147.99510 * 9 8 7 11 11 C 1.54308 * 109.77535 * 269.15429 * 9 8 7 12 12 C 1.55161 * 102.86334 * 141.87931 * 11 9 8 13 13 C 1.54902 * 101.58472 * 324.30504 * 12 11 9 14 14 N 1.47025 * 109.87798 * 26.90442 * 9 8 7 15 15 S 1.65593 * 125.65087 * 61.67859 * 14 9 8 16 16 O 1.42107 * 104.27632 * 211.72888 * 15 14 9 17 17 O 1.42103 * 104.27901 * 339.58341 * 15 14 9 18 18 C 1.81393 * 104.45151 * 95.65674 * 15 14 9 19 19 C 1.52999 * 109.47429 * 180.39085 * 18 15 14 20 20 C 1.50694 * 109.47395 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00125 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00063 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00187 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99953 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47146 * 60.00036 * 24 22 20 26 26 H 1.48500 * 109.47096 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46877 * 300.00031 * 24 22 20 28 28 H 1.08998 * 109.47248 * 60.00376 * 1 2 3 29 29 H 1.09000 * 109.46751 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47439 * 300.00012 * 1 2 3 31 31 H 1.08003 * 120.02893 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.97115 * 179.70040 * 5 4 3 33 33 H 1.08011 * 119.94460 * 180.02562 * 6 5 4 34 34 H 1.07994 * 119.97369 * 180.02562 * 7 6 5 35 35 H 1.09005 * 110.92932 * 23.47185 * 11 9 8 36 36 H 1.08995 * 110.74644 * 260.21339 * 11 9 8 37 37 H 1.09000 * 111.00254 * 206.22269 * 12 11 9 38 38 H 1.09004 * 110.99631 * 82.38058 * 12 11 9 39 39 H 1.08999 * 110.36598 * 278.16988 * 13 12 11 40 40 H 1.08997 * 110.37111 * 155.84030 * 13 12 11 41 41 H 1.09001 * 109.47192 * 300.39089 * 18 15 14 42 42 H 1.09002 * 109.47327 * 60.38956 * 18 15 14 43 43 H 1.08993 * 109.47099 * 300.00407 * 19 18 15 44 44 H 1.09010 * 109.46831 * 59.99963 * 19 18 15 45 45 H 0.97006 * 120.00068 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0053 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0068 7 6 4.0559 2.5171 -0.0058 8 6 3.4311 1.2849 -0.0001 9 6 4.2537 0.0222 0.0004 10 1 3.7314 -0.7627 0.5473 11 6 4.5154 -0.4310 -1.4513 12 6 5.9740 -0.9568 -1.3914 13 6 6.6164 0.0228 -0.3778 14 7 5.5620 0.2780 0.6205 15 16 5.8104 0.7653 2.1835 16 8 6.9838 1.5643 2.1192 17 8 4.5648 1.3235 2.5788 18 6 6.1356 -0.7716 3.0905 19 6 6.3743 -0.4514 4.5675 20 6 6.6439 -1.7283 5.3211 21 1 6.6453 -2.6736 4.7988 22 6 6.8887 -1.6897 6.6774 23 7 6.8865 -0.5387 7.3136 24 14 7.2236 -3.2725 7.6115 25 1 8.4277 -3.9343 7.0483 26 1 7.4539 -2.9618 9.0452 27 1 6.0548 -4.1794 7.4835 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2127 2.3203 0.0098 32 1 1.3339 4.5114 -0.0023 33 1 3.7921 4.6382 -0.0116 34 1 5.1343 2.5752 -0.0095 35 1 4.4364 0.4089 -2.1416 36 1 3.8294 -1.2285 -1.7364 37 1 6.4563 -0.8826 -2.3660 38 1 6.0051 -1.9807 -1.0188 39 1 6.9008 0.9503 -0.8747 40 1 7.4840 -0.4364 0.0959 41 1 5.2775 -1.4372 2.9971 42 1 7.0192 -1.2577 2.6768 43 1 7.2323 0.2141 4.6609 44 1 5.4906 0.0346 4.9813 45 1 7.0591 -0.5116 8.2678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111339042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:26 Heat of formation + Delta-G solvation = -105.214334 kcal Electronic energy + Delta-G solvation = -28437.453558 eV Core-core repulsion = 24546.441456 eV Total energy + Delta-G solvation = -3891.012102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38692 -39.45447 -38.21702 -37.95263 -37.00515 -35.93774 -33.19254 -32.87114 -31.93093 -31.00821 -28.95328 -27.95725 -27.61933 -24.34204 -23.61810 -22.98292 -22.46493 -21.87306 -19.88504 -19.28173 -18.78692 -18.34129 -17.67432 -17.08160 -16.92523 -16.60028 -16.56036 -16.46759 -16.06899 -15.37939 -15.26177 -14.85131 -14.62434 -14.56288 -14.46015 -14.18053 -13.78210 -13.68351 -13.44465 -13.17437 -13.12145 -12.95299 -12.93122 -12.82947 -12.60052 -12.50835 -12.36779 -12.29136 -12.17704 -12.03532 -11.95939 -11.78887 -11.72492 -11.48472 -11.20270 -10.66819 -10.08916 -9.68997 -9.04635 -8.28314 -6.43528 -0.76956 0.38365 0.51179 1.39013 1.43257 1.51526 1.72948 2.36496 2.41498 2.78289 2.84114 3.04392 3.07399 3.63648 3.66502 3.82176 3.94505 3.98260 4.07674 4.13329 4.16766 4.29798 4.35176 4.44546 4.46769 4.54139 4.63739 4.67900 4.74917 4.77775 4.79408 4.96934 5.00592 5.06202 5.07624 5.16876 5.20141 5.20872 5.33887 5.40517 5.50197 5.55036 5.64440 5.65829 5.86509 6.02333 6.48464 6.69234 7.26840 8.83990 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.003513 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.553303 B = 7967.825909 C = 8304.344130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.122 3.878 4 C -0.211 4.211 5 C -0.087 4.087 6 C -0.169 4.169 7 C -0.090 4.090 8 C -0.132 4.132 9 C 0.195 3.805 10 H 0.081 0.919 11 C -0.105 4.105 12 C -0.118 4.118 13 C 0.104 3.896 14 N -1.007 6.007 15 S 2.621 3.379 16 O -0.992 6.992 17 O -0.978 6.978 18 C -0.591 4.591 19 C 0.024 3.976 20 C -0.543 4.543 21 H 0.075 0.925 22 C -0.003 4.003 23 N -0.934 5.934 24 Si 0.976 3.024 25 H -0.261 1.261 26 H -0.282 1.282 27 H -0.263 1.263 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 0.174 -23.315 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.077 3.923 4 C -0.229 4.229 5 C -0.105 4.105 6 C -0.187 4.187 7 C -0.108 4.108 8 C -0.134 4.134 9 C 0.089 3.911 10 H 0.099 0.901 11 C -0.144 4.144 12 C -0.157 4.157 13 C -0.020 4.020 14 N -0.845 5.845 15 S 2.720 3.280 16 O -0.983 6.983 17 O -0.968 6.968 18 C -0.723 4.723 19 C -0.015 4.015 20 C -0.581 4.581 21 H 0.094 0.906 22 C -0.202 4.202 23 N -0.574 5.574 24 Si 0.799 3.201 25 H -0.186 1.186 26 H -0.207 1.207 27 H -0.187 1.187 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.073 0.927 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.023 0.977 44 H 0.022 0.978 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.718 1.005 -22.775 25.191 hybrid contribution 0.170 -0.611 1.285 1.433 sum -10.548 0.394 -21.490 23.943 Atomic orbital electron populations 1.23337 0.76617 1.05548 1.02110 1.86020 1.23272 1.26362 1.88624 1.18849 0.91383 0.85290 0.96826 1.21514 1.01136 0.91956 1.08314 1.21247 0.94281 0.98122 0.96839 1.21303 0.94942 0.98483 1.03958 1.20848 0.99605 0.92265 0.98092 1.19598 0.91426 0.96159 1.06196 1.20186 0.81218 0.93052 0.96656 0.90117 1.22621 0.98023 1.01840 0.91941 1.22831 0.94242 0.98835 0.99756 1.22346 0.89747 1.00155 0.89773 1.58630 1.14018 1.85615 1.26253 1.04507 0.73102 0.77259 0.73115 1.93493 1.51743 1.66960 1.86083 1.93536 1.44269 1.76655 1.82334 1.30419 1.12081 1.20783 1.09003 1.18790 0.95967 0.98297 0.88467 1.21467 1.49406 0.93419 0.93844 0.90643 1.26155 0.94562 1.00537 0.98904 1.70103 1.49667 1.27430 1.10173 0.85332 0.79452 0.78291 0.76997 1.18572 1.20729 1.18718 0.90976 0.86293 0.92659 0.82914 0.83073 0.84713 0.87087 0.90236 0.88245 0.87190 0.89441 0.90882 0.90016 0.84591 0.84241 0.97723 0.97798 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.84 9.60 -92.49 -0.89 -8.73 16 3 C 0.12 3.33 6.66 22.51 0.15 3.48 16 4 C -0.21 -4.92 9.04 22.37 0.20 -4.71 16 5 C -0.09 -2.02 10.04 22.25 0.22 -1.80 16 6 C -0.17 -4.57 10.04 22.28 0.22 -4.35 16 7 C -0.09 -2.76 8.02 22.25 0.18 -2.58 16 8 C -0.13 -3.91 3.72 -19.77 -0.07 -3.98 16 9 C 0.19 5.15 2.96 44.59 0.13 5.29 16 10 H 0.08 2.21 7.63 -2.39 -0.02 2.19 16 11 C -0.11 -1.85 6.46 31.78 0.21 -1.64 16 12 C -0.12 -1.73 7.08 31.98 0.23 -1.50 16 13 C 0.10 2.27 6.96 86.85 0.60 2.87 16 14 N -1.01 -29.54 2.29 -488.14 -1.12 -30.66 16 15 S 2.62 104.73 5.12 -56.49 -0.29 104.44 16 16 O -0.99 -44.67 17.70 -127.65 -2.26 -46.93 16 17 O -0.98 -44.56 15.46 -127.65 -1.97 -46.53 16 18 C -0.59 -24.52 6.12 71.98 0.44 -24.08 16 19 C 0.02 1.31 4.98 29.85 0.15 1.46 16 20 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 21 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 22 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 23 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 24 Si 0.98 43.94 29.54 68.60 2.03 45.97 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 28 H 0.07 0.77 7.67 -2.39 -0.02 0.76 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 0.81 7.65 -2.39 -0.02 0.79 16 31 H 0.15 2.56 6.30 -2.91 -0.02 2.54 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.13 3.09 8.06 -2.90 -0.02 3.07 16 34 H 0.11 3.51 7.18 -2.91 -0.02 3.49 16 35 H 0.08 1.35 7.85 -2.38 -0.02 1.34 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.14 5.10 8.14 -2.39 -0.02 5.08 16 42 H 0.14 5.06 8.14 -2.39 -0.02 5.04 16 43 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 45 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -81.04 378.65 1.23 -79.81 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.97 Total: 21.26 kcal Atomic # 6 Polarization: -65.26 SS G_CDS: 4.47 Total: -60.79 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -0.83 Total: -88.50 kcal Atomic # 8 Polarization: -97.07 SS G_CDS: -5.12 Total: -102.19 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 104.73 SS G_CDS: -0.29 Total: 104.44 kcal Total: -81.04 1.23 -79.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111339042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.403 kcal (2) G-P(sol) polarization free energy of solvation -81.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds