Wall clock time and date at job start Tue Mar 31 2020 22:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81400 * 109.46869 * 2 1 4 4 O 1.42094 * 108.58052 * 65.51450 * 3 2 1 5 5 O 1.42100 * 108.57945 * 294.48864 * 3 2 1 6 6 C 1.81405 * 101.92093 * 180.02562 * 3 2 1 7 7 C 1.50699 * 109.47053 * 180.02562 * 6 3 2 8 8 O 1.21286 * 120.00439 * 7.71986 * 7 6 3 9 9 N 1.34778 * 119.99903 * 187.72647 * 7 6 3 10 10 C 1.46501 * 119.99847 * 5.02183 * 9 7 6 11 11 C 1.50700 * 109.46799 * 252.60537 * 10 9 7 12 12 H 1.07997 * 119.99995 * 233.96359 * 11 10 9 13 13 C 1.37883 * 120.00190 * 53.69309 * 11 10 9 14 14 N 1.31516 * 119.99611 * 346.42020 * 13 11 10 15 15 Si 1.86799 * 120.00075 * 166.42510 * 13 11 10 16 16 H 1.48505 * 109.46836 * 90.00163 * 15 13 11 17 17 H 1.48496 * 109.46927 * 209.99859 * 15 13 11 18 18 H 1.48500 * 109.47423 * 329.99933 * 15 13 11 19 19 C 1.39921 * 120.00187 * 185.01990 * 9 7 6 20 20 C 1.38888 * 120.07252 * 189.26506 * 19 9 7 21 21 C 1.38096 * 119.92844 * 179.74504 * 20 19 9 22 22 C 1.38294 * 120.06978 * 0.53241 * 21 20 19 23 23 C 1.50707 * 119.93020 * 179.69975 * 22 21 20 24 24 C 1.38264 * 120.14338 * 359.72318 * 22 21 20 25 25 C 1.50703 * 119.96269 * 180.02562 * 24 22 21 26 26 C 1.38132 * 120.06688 * 0.02562 * 24 22 21 27 27 H 1.09004 * 109.46712 * 299.99693 * 1 2 3 28 28 H 1.08998 * 109.47399 * 59.99809 * 1 2 3 29 29 H 1.08998 * 109.47077 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46712 * 240.00307 * 2 1 3 31 31 H 1.08998 * 109.47399 * 120.00191 * 2 1 3 32 32 H 1.09000 * 109.47030 * 59.99895 * 6 3 2 33 33 H 1.09002 * 109.46881 * 299.99925 * 6 3 2 34 34 H 1.08997 * 109.47653 * 132.60918 * 10 9 7 35 35 H 1.08997 * 109.47205 * 12.60193 * 10 9 7 36 36 H 0.97001 * 119.99666 * 185.02597 * 14 13 11 37 37 H 1.07999 * 120.03813 * 359.97438 * 20 19 9 38 38 H 1.08003 * 119.96015 * 180.26057 * 21 20 19 39 39 H 1.08991 * 109.47159 * 270.02460 * 23 22 21 40 40 H 1.09006 * 109.46481 * 30.02755 * 23 22 21 41 41 H 1.09001 * 109.46753 * 150.01946 * 23 22 21 42 42 H 1.08999 * 109.46862 * 270.01647 * 25 24 22 43 43 H 1.08990 * 109.47532 * 30.02345 * 25 24 22 44 44 H 1.09007 * 109.46878 * 150.02173 * 25 24 22 45 45 H 1.08008 * 120.03023 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3232 1.2257 5 8 1.7591 2.3232 -1.2258 6 6 3.9330 1.4720 -0.0008 7 6 4.6176 2.8145 -0.0002 8 8 3.9659 3.8276 0.1417 9 7 5.9540 2.8895 -0.1576 10 6 6.7276 1.6776 -0.4389 11 6 7.5176 1.2907 0.7847 12 1 8.5852 1.1439 0.7140 13 6 6.8782 1.1296 1.9957 14 7 5.6471 1.5647 2.1522 15 14 7.7608 0.2934 3.4139 16 1 8.4868 1.3119 4.2145 17 1 6.7686 -0.3983 4.2754 18 1 8.7286 -0.6979 2.8792 19 6 6.6027 4.1248 -0.0524 20 6 7.9421 4.2395 -0.4013 21 6 8.5779 5.4613 -0.3013 22 6 7.8854 6.5675 0.1562 23 6 8.5843 7.8978 0.2705 24 6 6.5534 6.4555 0.5094 25 6 5.8024 7.6637 1.0069 26 6 5.9102 5.2373 0.4067 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.2253 0.9150 -0.8910 33 1 4.2260 0.9148 0.8890 34 1 7.4103 1.8663 -1.2674 35 1 6.0491 0.8670 -0.7046 36 1 5.2231 1.5176 3.0234 37 1 8.4848 3.3750 -0.7541 38 1 9.6184 5.5520 -0.5765 39 1 9.0274 7.9914 1.2619 40 1 9.3671 7.9630 -0.4852 41 1 7.8636 8.7011 0.1173 42 1 5.8963 7.7288 2.0909 43 1 6.2178 8.5626 0.5515 44 1 4.7499 7.5733 0.7382 45 1 4.8698 5.1504 0.6832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112286927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:31 Heat of formation + Delta-G solvation = -65.695740 kcal Electronic energy + Delta-G solvation = -28756.352027 eV Core-core repulsion = 24867.053580 eV Total energy + Delta-G solvation = -3889.298447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.96502 -38.05046 -36.44302 -35.59680 -35.37891 -33.05686 -33.02086 -31.73669 -31.29848 -29.52600 -28.10951 -26.36822 -25.40572 -23.92744 -23.20968 -21.58310 -20.47428 -18.74863 -18.28934 -17.16491 -16.96105 -16.06626 -15.87809 -15.70111 -15.25347 -15.07184 -14.71944 -14.52013 -14.14479 -13.99606 -13.68730 -13.25386 -13.09781 -12.77971 -12.63479 -12.47997 -12.42510 -12.34567 -12.12592 -12.05689 -11.75713 -11.54516 -11.53226 -11.48382 -11.44316 -11.28273 -11.10968 -10.91755 -10.87222 -10.47866 -10.28628 -10.19618 -10.08253 -9.92497 -9.09963 -8.70393 -8.62124 -7.91176 -6.86734 -6.35348 -4.58252 0.35620 2.08544 2.23260 3.07215 3.17665 3.18986 3.22413 3.45705 3.86080 4.10421 4.21129 4.38000 4.67656 4.74352 4.86138 4.94109 5.18197 5.23372 5.41552 5.45511 5.49481 5.63974 5.65131 5.69202 5.72015 5.87958 5.89543 5.93247 6.11694 6.20167 6.23846 6.27883 6.31784 6.42625 6.52025 6.63429 6.69857 6.89097 7.16197 7.22499 7.40997 7.44464 7.54934 7.72923 8.05980 8.36279 8.51358 8.98221 9.14868 10.55716 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.005082 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.875889 B = 5508.383685 C = 7329.300503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.628 4.628 3 S 2.439 3.561 4 O -0.923 6.923 5 O -0.943 6.943 6 C -0.634 4.634 7 C 0.584 3.416 8 O -0.555 6.555 9 N -0.503 5.503 10 C 0.212 3.788 11 C -0.537 4.537 12 H 0.069 0.931 13 C 0.077 3.923 14 N -0.880 5.880 15 Si 0.900 3.100 16 H -0.278 1.278 17 H -0.282 1.282 18 H -0.271 1.271 19 C 0.194 3.806 20 C -0.150 4.150 21 C -0.103 4.103 22 C -0.138 4.138 23 C -0.104 4.104 24 C -0.075 4.075 25 C -0.110 4.110 26 C -0.165 4.165 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.199 0.801 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.274 0.726 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 -0.868 -4.128 4.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.756 4.756 3 S 2.618 3.382 4 O -0.920 6.920 5 O -0.940 6.940 6 C -0.764 4.764 7 C 0.374 3.626 8 O -0.438 6.438 9 N -0.220 5.220 10 C 0.094 3.906 11 C -0.575 4.575 12 H 0.088 0.912 13 C -0.127 4.127 14 N -0.518 5.518 15 Si 0.727 3.273 16 H -0.204 1.204 17 H -0.207 1.207 18 H -0.195 1.195 19 C 0.098 3.902 20 C -0.170 4.170 21 C -0.121 4.121 22 C -0.140 4.140 23 C -0.160 4.160 24 C -0.076 4.076 25 C -0.167 4.167 26 C -0.184 4.184 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.216 0.784 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.979 0.229 -3.976 4.973 hybrid contribution 1.281 -1.612 1.066 2.318 sum -1.698 -1.383 -2.909 3.642 Atomic orbital electron populations 1.21478 0.90806 1.04317 1.03603 1.30372 1.07130 1.26733 1.11350 1.07657 0.77990 0.76986 0.75569 1.93544 1.80930 1.72072 1.45433 1.93518 1.81495 1.72698 1.46243 1.31046 1.23373 1.06972 1.15019 1.18616 0.82559 0.87303 0.74100 1.90450 1.65207 1.35895 1.52275 1.45904 1.05795 1.07453 1.62847 1.19790 0.91997 0.82429 0.96391 1.21422 0.95120 1.46696 0.94218 0.91244 1.25040 0.94752 0.93813 0.99105 1.69605 1.13425 1.44139 1.24665 0.86442 0.79528 0.79873 0.81466 1.20379 1.20735 1.19538 1.17823 0.91919 0.85260 0.95234 1.20751 0.93645 0.97789 1.04844 1.20591 0.98632 0.92108 1.00814 1.19493 0.94082 0.95472 1.04910 1.20691 0.99530 0.94654 1.01164 1.19578 0.93267 0.95157 0.99556 1.20772 0.99893 0.95369 1.00621 1.22268 1.04035 0.90862 1.01271 0.90913 0.91027 0.90490 0.85326 0.84977 0.84473 0.78439 0.94371 0.93361 0.91575 0.85792 0.87001 0.92308 0.92622 0.91979 0.91847 0.91921 0.91771 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.92 37.16 0.37 -1.21 16 2 C -0.63 -7.39 6.53 37.16 0.24 -7.15 16 3 S 2.44 42.88 3.99 -107.50 -0.43 42.45 16 4 O -0.92 -19.74 17.79 -61.30 -1.09 -20.83 16 5 O -0.94 -18.96 18.08 -57.89 -1.05 -20.01 16 6 C -0.63 -11.83 4.73 36.01 0.17 -11.66 16 7 C 0.58 13.57 6.04 -10.99 -0.07 13.51 16 8 O -0.56 -14.09 12.18 1.43 0.02 -14.07 16 9 N -0.50 -11.55 2.12 -114.74 -0.24 -11.80 16 10 C 0.21 4.53 5.15 -5.19 -0.03 4.51 16 11 C -0.54 -12.52 8.69 -34.44 -0.30 -12.82 16 12 H 0.07 1.61 7.85 -52.49 -0.41 1.20 16 13 C 0.08 1.84 5.41 -17.82 -0.10 1.74 16 14 N -0.88 -21.50 8.03 55.43 0.45 -21.06 16 15 Si 0.90 19.08 29.56 -169.99 -5.03 14.05 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 C 0.19 4.46 6.28 -83.70 -0.53 3.93 16 20 C -0.15 -3.07 8.97 -39.39 -0.35 -3.42 16 21 C -0.10 -1.87 9.69 -39.61 -0.38 -2.25 16 22 C -0.14 -2.47 5.88 -104.59 -0.62 -3.08 16 23 C -0.10 -1.42 9.60 36.01 0.35 -1.07 16 24 C -0.07 -1.46 5.88 -104.65 -0.62 -2.08 16 25 C -0.11 -1.75 9.60 36.01 0.35 -1.41 16 26 C -0.16 -3.76 8.61 -39.39 -0.34 -4.10 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.13 1.16 8.14 -51.92 -0.42 0.74 16 31 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.14 2.02 6.91 -51.92 -0.36 1.66 16 33 H 0.20 3.81 5.52 -51.92 -0.29 3.52 16 34 H 0.04 0.74 6.86 -51.93 -0.36 0.39 16 35 H 0.05 0.95 5.73 -51.93 -0.30 0.65 16 36 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 37 H 0.12 2.43 6.21 -52.49 -0.33 2.10 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 41 H 0.06 0.77 5.94 -51.93 -0.31 0.46 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.84 5.94 -51.93 -0.31 0.53 16 44 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 45 H 0.17 4.22 4.79 -54.81 -0.26 3.96 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -32.49 369.34 -9.93 -42.42 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.27 Total: 9.83 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -1.85 Total: -26.56 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.20 Total: -32.85 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -2.12 Total: -54.91 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Atomic # 16 Polarization: 42.88 SS G_CDS: -0.43 Total: 42.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.49 -9.93 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112286927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.273 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds