Wall clock time and date at job start Tue Mar 31 2020 22:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81400 * 109.46869 * 2 1 4 4 O 1.42094 * 108.58052 * 65.51450 * 3 2 1 5 5 O 1.42100 * 108.57945 * 294.48864 * 3 2 1 6 6 C 1.81405 * 101.92093 * 180.02562 * 3 2 1 7 7 C 1.50699 * 109.47053 * 180.02562 * 6 3 2 8 8 O 1.21286 * 120.00439 * 7.71986 * 7 6 3 9 9 N 1.34778 * 119.99903 * 187.72647 * 7 6 3 10 10 C 1.46501 * 119.99847 * 5.02183 * 9 7 6 11 11 C 1.50700 * 109.46799 * 252.60537 * 10 9 7 12 12 H 1.07997 * 119.99995 * 233.96359 * 11 10 9 13 13 C 1.37883 * 120.00190 * 53.69309 * 11 10 9 14 14 N 1.31516 * 119.99611 * 346.42020 * 13 11 10 15 15 Si 1.86799 * 120.00075 * 166.42510 * 13 11 10 16 16 H 1.48505 * 109.46836 * 90.00163 * 15 13 11 17 17 H 1.48496 * 109.46927 * 209.99859 * 15 13 11 18 18 H 1.48500 * 109.47423 * 329.99933 * 15 13 11 19 19 C 1.39921 * 120.00187 * 185.01990 * 9 7 6 20 20 C 1.38888 * 120.07252 * 189.26506 * 19 9 7 21 21 C 1.38096 * 119.92844 * 179.74504 * 20 19 9 22 22 C 1.38294 * 120.06978 * 0.53241 * 21 20 19 23 23 C 1.50707 * 119.93020 * 179.69975 * 22 21 20 24 24 C 1.38264 * 120.14338 * 359.72318 * 22 21 20 25 25 C 1.50703 * 119.96269 * 180.02562 * 24 22 21 26 26 C 1.38132 * 120.06688 * 0.02562 * 24 22 21 27 27 H 1.09004 * 109.46712 * 299.99693 * 1 2 3 28 28 H 1.08998 * 109.47399 * 59.99809 * 1 2 3 29 29 H 1.08998 * 109.47077 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46712 * 240.00307 * 2 1 3 31 31 H 1.08998 * 109.47399 * 120.00191 * 2 1 3 32 32 H 1.09000 * 109.47030 * 59.99895 * 6 3 2 33 33 H 1.09002 * 109.46881 * 299.99925 * 6 3 2 34 34 H 1.08997 * 109.47653 * 132.60918 * 10 9 7 35 35 H 1.08997 * 109.47205 * 12.60193 * 10 9 7 36 36 H 0.97001 * 119.99666 * 185.02597 * 14 13 11 37 37 H 1.07999 * 120.03813 * 359.97438 * 20 19 9 38 38 H 1.08003 * 119.96015 * 180.26057 * 21 20 19 39 39 H 1.08991 * 109.47159 * 270.02460 * 23 22 21 40 40 H 1.09006 * 109.46481 * 30.02755 * 23 22 21 41 41 H 1.09001 * 109.46753 * 150.01946 * 23 22 21 42 42 H 1.08999 * 109.46862 * 270.01647 * 25 24 22 43 43 H 1.08990 * 109.47532 * 30.02345 * 25 24 22 44 44 H 1.09007 * 109.46878 * 150.02173 * 25 24 22 45 45 H 1.08008 * 120.03023 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3232 1.2257 5 8 1.7591 2.3232 -1.2258 6 6 3.9330 1.4720 -0.0008 7 6 4.6176 2.8145 -0.0002 8 8 3.9659 3.8276 0.1417 9 7 5.9540 2.8895 -0.1576 10 6 6.7276 1.6776 -0.4389 11 6 7.5176 1.2907 0.7847 12 1 8.5852 1.1439 0.7140 13 6 6.8782 1.1296 1.9957 14 7 5.6471 1.5647 2.1522 15 14 7.7608 0.2934 3.4139 16 1 8.4868 1.3119 4.2145 17 1 6.7686 -0.3983 4.2754 18 1 8.7286 -0.6979 2.8792 19 6 6.6027 4.1248 -0.0524 20 6 7.9421 4.2395 -0.4013 21 6 8.5779 5.4613 -0.3013 22 6 7.8854 6.5675 0.1562 23 6 8.5843 7.8978 0.2705 24 6 6.5534 6.4555 0.5094 25 6 5.8024 7.6637 1.0069 26 6 5.9102 5.2373 0.4067 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.2253 0.9150 -0.8910 33 1 4.2260 0.9148 0.8890 34 1 7.4103 1.8663 -1.2674 35 1 6.0491 0.8670 -0.7046 36 1 5.2231 1.5176 3.0234 37 1 8.4848 3.3750 -0.7541 38 1 9.6184 5.5520 -0.5765 39 1 9.0274 7.9914 1.2619 40 1 9.3671 7.9630 -0.4852 41 1 7.8636 8.7011 0.1173 42 1 5.8963 7.7288 2.0909 43 1 6.2178 8.5626 0.5515 44 1 4.7499 7.5733 0.7382 45 1 4.8698 5.1504 0.6832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112286927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:30 Heat of formation + Delta-G solvation = -86.439052 kcal Electronic energy + Delta-G solvation = -28757.251525 eV Core-core repulsion = 24867.053580 eV Total energy + Delta-G solvation = -3890.197944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.60998 -39.60546 -37.92282 -37.24221 -36.91255 -34.69999 -34.00862 -33.27412 -32.79470 -30.99208 -29.74896 -27.85928 -26.78609 -24.99410 -24.88750 -23.10416 -21.99300 -20.33884 -19.72610 -18.86743 -18.47356 -17.63022 -17.28149 -17.14694 -16.82527 -16.68703 -16.19249 -16.07148 -15.54020 -15.22099 -15.00880 -14.74820 -14.46851 -14.31382 -14.05319 -13.92334 -13.71739 -13.59018 -13.51273 -13.37868 -13.24228 -13.05847 -12.99501 -12.94510 -12.75329 -12.69160 -12.55000 -12.37434 -12.32095 -11.96088 -11.83582 -11.74550 -11.61619 -11.24805 -10.82750 -10.40703 -10.30486 -9.46916 -8.52816 -8.10127 -6.41917 -0.96995 0.52761 0.65926 1.36874 1.44355 1.51478 1.79528 1.91457 2.29287 2.35893 2.82930 3.04443 3.14442 3.18048 3.63902 3.76649 3.90110 4.08432 4.11813 4.14001 4.34956 4.38444 4.42034 4.57709 4.67096 4.69558 4.73776 4.75227 4.82741 4.90571 4.91532 4.93961 5.04195 5.08792 5.10716 5.12483 5.26683 5.36582 5.62311 5.65191 5.67352 5.89798 5.92311 6.01719 6.43523 6.59266 6.79517 7.24751 7.36045 8.72939 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.005082 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.875889 B = 5508.383685 C = 7329.300503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.587 4.587 3 S 2.425 3.575 4 O -0.977 6.977 5 O -0.981 6.981 6 C -0.636 4.636 7 C 0.563 3.437 8 O -0.591 6.591 9 N -0.508 5.508 10 C 0.207 3.793 11 C -0.544 4.544 12 H 0.068 0.932 13 C 0.039 3.961 14 N -0.895 5.895 15 Si 0.951 3.049 16 H -0.294 1.294 17 H -0.280 1.280 18 H -0.260 1.260 19 C 0.159 3.841 20 C -0.161 4.161 21 C -0.100 4.100 22 C -0.135 4.135 23 C -0.101 4.101 24 C -0.086 4.086 25 C -0.107 4.107 26 C -0.200 4.200 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.173 0.827 33 H 0.196 0.804 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.267 0.733 37 H 0.129 0.871 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -1.939 -4.714 5.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.720 4.720 3 S 2.610 3.390 4 O -0.975 6.975 5 O -0.978 6.978 6 C -0.765 4.765 7 C 0.354 3.646 8 O -0.477 6.477 9 N -0.224 5.224 10 C 0.089 3.911 11 C -0.582 4.582 12 H 0.086 0.914 13 C -0.163 4.163 14 N -0.534 5.534 15 Si 0.778 3.222 16 H -0.221 1.221 17 H -0.206 1.206 18 H -0.184 1.184 19 C 0.063 3.937 20 C -0.181 4.181 21 C -0.119 4.119 22 C -0.136 4.136 23 C -0.157 4.157 24 C -0.086 4.086 25 C -0.163 4.163 26 C -0.220 4.220 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.187 0.813 31 H 0.176 0.824 32 H 0.191 0.809 33 H 0.212 0.788 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.571 -0.793 -4.573 4.900 hybrid contribution 0.871 -1.276 1.212 1.964 sum -0.699 -2.069 -3.361 4.008 Atomic orbital electron populations 1.21724 0.89768 1.06668 1.03552 1.30055 1.07690 1.19546 1.14757 1.07775 0.77243 0.80089 0.73879 1.93471 1.81232 1.75749 1.47004 1.93459 1.81467 1.75916 1.46926 1.31010 1.24335 1.04797 1.16333 1.19393 0.82855 0.88633 0.73682 1.90440 1.65957 1.37566 1.53702 1.45963 1.05920 1.07846 1.62696 1.19936 0.92459 0.82513 0.96238 1.21612 0.95156 1.46440 0.94959 0.91423 1.25606 0.95334 0.94376 1.00946 1.69775 1.14299 1.44885 1.24401 0.85664 0.78633 0.78771 0.79160 1.22139 1.20564 1.18405 1.18207 0.93184 0.85483 0.96856 1.20933 0.92795 0.99170 1.05229 1.21057 1.00184 0.91219 0.99415 1.20012 0.93361 0.97535 1.02713 1.20762 1.00137 0.92157 1.02640 1.19994 0.94544 0.94991 0.99114 1.20817 0.99097 0.95205 1.01220 1.22201 1.03271 0.92855 1.03636 0.91563 0.90931 0.86619 0.81258 0.82399 0.80916 0.78795 0.92985 0.91699 0.92371 0.85355 0.83435 0.91058 0.90388 0.90532 0.91077 0.88706 0.92882 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.92 71.98 0.71 -2.30 16 2 C -0.59 -12.01 6.53 71.98 0.47 -11.54 16 3 S 2.42 87.15 3.99 -56.49 -0.23 86.93 16 4 O -0.98 -44.30 17.79 -124.06 -2.21 -46.51 16 5 O -0.98 -40.95 18.08 -127.32 -2.30 -43.25 16 6 C -0.64 -24.14 4.73 71.24 0.34 -23.80 16 7 C 0.56 27.47 6.04 87.66 0.53 28.00 16 8 O -0.59 -32.43 12.18 0.90 0.01 -32.42 16 9 N -0.51 -24.13 2.12 -635.32 -1.35 -25.48 16 10 C 0.21 8.85 5.15 85.63 0.44 9.30 16 11 C -0.54 -25.32 8.69 25.60 0.22 -25.10 16 12 H 0.07 3.11 7.85 -2.91 -0.02 3.09 16 13 C 0.04 1.88 5.41 84.66 0.46 2.34 16 14 N -0.90 -44.80 8.03 21.45 0.17 -44.63 16 15 Si 0.95 39.19 29.56 68.60 2.03 41.22 16 16 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 C 0.16 7.58 6.28 38.15 0.24 7.82 16 20 C -0.16 -6.61 8.97 22.39 0.20 -6.41 16 21 C -0.10 -3.48 9.69 22.25 0.22 -3.27 16 22 C -0.14 -4.58 5.88 -19.84 -0.12 -4.70 16 23 C -0.10 -2.37 9.60 71.24 0.68 -1.69 16 24 C -0.09 -3.38 5.88 -19.88 -0.12 -3.50 16 25 C -0.11 -3.39 9.60 71.24 0.68 -2.70 16 26 C -0.20 -9.65 8.61 22.39 0.19 -9.45 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.17 2.22 8.14 -2.39 -0.02 2.21 16 31 H 0.16 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.17 4.95 6.91 -2.39 -0.02 4.93 16 33 H 0.20 7.57 5.52 -2.39 -0.01 7.56 16 34 H 0.05 2.02 6.86 -2.39 -0.02 2.01 16 35 H 0.07 2.50 5.73 -2.39 -0.01 2.49 16 36 H 0.27 13.32 8.32 -92.71 -0.77 12.55 16 37 H 0.13 5.01 6.21 -2.91 -0.02 4.99 16 38 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.52 8.08 -2.38 -0.02 1.50 16 41 H 0.08 1.59 5.94 -2.39 -0.01 1.58 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.09 2.33 5.94 -2.39 -0.01 2.32 16 44 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 45 H 0.14 7.60 4.79 -39.78 -0.19 7.41 16 Total: -1.00 -76.83 369.34 2.11 -74.72 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.83 Total: 36.43 kcal Atomic # 6 Polarization: -52.16 SS G_CDS: 5.16 Total: -47.00 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -1.18 Total: -70.11 kcal Atomic # 8 Polarization: -117.68 SS G_CDS: -4.50 Total: -122.18 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 16 Polarization: 87.15 SS G_CDS: -0.23 Total: 86.93 kcal Total: -76.83 2.11 -74.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112286927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.718 kcal (2) G-P(sol) polarization free energy of solvation -76.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds