Wall clock time and date at job start Tue Mar 31 2020 23:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35981 * 117.00363 * 2 1 4 4 C 1.38726 * 119.99628 * 0.02562 * 3 2 1 5 5 C 1.38113 * 119.99634 * 179.70141 * 4 3 2 6 6 C 1.38714 * 120.00321 * 0.55287 * 5 4 3 7 7 O 1.35981 * 120.00486 * 179.72086 * 6 5 4 8 8 C 1.42905 * 116.99586 * 359.72953 * 7 6 5 9 9 C 1.38676 * 119.99734 * 359.44725 * 6 5 4 10 10 C 1.50698 * 120.00084 * 180.29440 * 9 6 5 11 11 C 1.53002 * 109.47021 * 85.00366 * 10 9 6 12 12 C 1.52998 * 109.47211 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47219 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00103 * 179.97438 * 13 12 11 15 15 O 1.21273 * 120.00251 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99853 * 179.97438 * 14 13 12 17 17 S 1.80993 * 109.47157 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00400 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99876 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00407 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99814 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47352 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47187 * 120.00089 * 22 20 18 25 25 H 1.48496 * 109.47090 * 239.99739 * 22 20 18 26 26 C 1.38155 * 120.00047 * 0.27976 * 9 6 5 27 27 H 1.08996 * 109.47531 * 59.99513 * 1 2 3 28 28 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46555 * 299.99411 * 1 2 3 30 30 H 1.07998 * 119.99994 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.99555 * 180.29573 * 5 4 3 32 32 H 1.09001 * 109.47103 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.47054 * 299.99751 * 8 7 6 34 34 H 1.09000 * 109.47187 * 59.99807 * 8 7 6 35 35 H 1.09005 * 109.47486 * 205.00022 * 10 9 6 36 36 H 1.09003 * 109.47450 * 325.00643 * 10 9 6 37 37 H 1.09005 * 109.46709 * 300.00131 * 11 10 9 38 38 H 1.09001 * 109.47518 * 59.99956 * 11 10 9 39 39 H 1.09005 * 109.47156 * 299.99570 * 12 11 10 40 40 H 1.09003 * 109.47590 * 60.00074 * 12 11 10 41 41 H 0.97004 * 119.99797 * 0.02562 * 13 12 11 42 42 H 1.08997 * 109.47302 * 300.00405 * 16 14 13 43 43 H 1.09003 * 109.46663 * 60.00309 * 16 14 13 44 44 H 0.96998 * 120.00107 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.00030 * 179.97438 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0068 6 6 3.3031 3.6782 0.0009 7 8 3.9206 4.8898 0.0013 8 6 3.0806 6.0459 0.0019 9 6 4.0584 2.5152 0.0004 10 6 5.5633 2.5940 0.0007 11 6 6.0658 2.7453 1.4379 12 6 7.5936 2.8260 1.4383 13 7 8.0747 2.9714 2.8144 14 6 9.3968 3.0621 3.0601 15 8 10.1882 3.0238 2.1420 16 6 9.8915 3.2124 4.4756 17 16 11.6990 3.3077 4.4761 18 6 11.9963 3.4742 6.2048 19 1 11.1667 3.4912 6.8962 20 6 13.2964 3.5845 6.6780 21 7 14.3074 3.5643 5.8353 22 14 13.6114 3.7618 8.5106 23 1 12.3168 3.7575 9.2382 24 1 14.4479 2.6285 8.9810 25 1 14.3200 5.0408 8.7697 26 6 3.4312 1.2842 -0.0002 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2123 2.3185 0.0005 31 1 1.3297 4.5113 0.0120 32 1 3.6984 6.9439 0.0017 33 1 2.4512 6.0382 -0.8880 34 1 2.4514 6.0374 0.8920 35 1 5.9751 1.6831 -0.4341 36 1 5.8823 3.4541 -0.5881 37 1 5.6540 3.6561 1.8727 38 1 5.7469 1.8853 2.0268 39 1 8.0057 1.9153 1.0033 40 1 7.9123 3.6862 0.8496 41 1 7.4417 3.0017 3.5488 42 1 9.4799 4.1235 4.9096 43 1 9.5725 2.3528 5.0651 44 1 15.2160 3.6410 6.1660 45 1 4.0194 0.3784 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121019868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:52 Heat of formation + Delta-G solvation = -98.822132 kcal Electronic energy + Delta-G solvation = -25416.059495 eV Core-core repulsion = 21525.324580 eV Total energy + Delta-G solvation = -3890.734915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.92122 -39.35171 -39.06355 -37.08177 -35.58134 -33.46414 -32.39648 -31.03824 -30.15317 -28.92324 -27.81797 -27.26493 -25.74211 -25.31798 -22.62873 -22.20675 -21.24395 -20.17283 -18.39663 -17.88722 -17.77739 -17.26340 -16.28599 -16.12288 -15.91655 -15.83855 -15.64776 -15.14780 -14.86332 -14.77542 -14.54957 -13.99433 -13.83263 -13.66989 -13.32450 -13.19928 -13.01948 -12.61617 -12.57544 -12.49368 -12.24375 -12.00951 -11.93181 -11.70115 -11.54641 -11.04845 -10.98747 -10.97475 -10.88447 -10.78257 -10.72148 -9.77145 -9.38603 -9.21079 -9.04637 -8.78029 -8.18603 -8.07320 -6.45859 -6.18607 -3.88607 0.83449 1.09378 2.85412 3.00199 3.09869 3.18666 3.23799 3.28735 3.31927 3.38137 3.81228 4.23513 4.26871 4.31581 4.59866 4.65403 4.70058 4.70364 4.77015 4.78265 4.92253 5.02019 5.06502 5.10437 5.12192 5.16256 5.16523 5.30451 5.36834 5.47545 5.53540 5.66274 5.74699 5.86749 5.87684 5.91284 5.95689 6.08380 6.15374 6.19650 6.27766 6.72414 6.89011 7.10970 7.63089 7.80776 8.38718 8.70368 9.26793 10.88915 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.001662 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.047211 B =16847.000227 C =17276.671374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.093 3.907 4 C -0.174 4.174 5 C -0.168 4.168 6 C 0.096 3.904 7 O -0.310 6.310 8 C 0.027 3.973 9 C -0.069 4.069 10 C -0.069 4.069 11 C -0.122 4.122 12 C 0.122 3.878 13 N -0.739 5.739 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.110 4.110 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.267 0.733 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.837 -1.223 -13.155 35.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.048 3.952 4 C -0.193 4.193 5 C -0.187 4.187 6 C 0.051 3.949 7 O -0.223 6.223 8 C -0.068 4.068 9 C -0.070 4.070 10 C -0.107 4.107 11 C -0.160 4.160 12 C -0.002 4.002 13 N -0.394 5.394 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.128 4.128 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.119 0.881 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -31.026 -1.418 -14.727 34.373 hybrid contribution -1.765 0.480 2.602 3.181 sum -32.791 -0.938 -12.125 34.974 Atomic orbital electron populations 1.23033 0.78561 1.03944 1.01157 1.86089 1.21174 1.26672 1.89232 1.18872 0.92220 0.84209 0.99900 1.20995 0.99917 0.91709 1.06676 1.21002 0.93251 0.98369 1.06081 1.18732 0.90609 0.85510 1.00041 1.86128 1.35248 1.12022 1.88947 1.23054 0.95968 0.86748 1.01023 1.19013 0.95999 0.89570 1.02438 1.20362 0.89389 1.03723 0.97226 1.21728 0.94502 1.02985 0.96777 1.21273 0.92975 1.02159 0.83835 1.46006 1.07470 1.77091 1.08795 1.20290 0.81575 0.75341 0.91131 1.90695 1.54573 1.47950 1.46123 1.23532 1.06799 1.04773 0.95304 1.85393 0.91969 1.95699 1.10396 1.22920 0.95244 1.58008 0.92106 0.90888 1.24994 0.95044 0.94646 0.98952 1.70032 0.99040 1.46875 1.34354 0.86117 0.78372 0.77920 0.83076 1.19635 1.20580 1.20592 1.20186 0.91280 0.97571 1.03800 0.92811 0.88235 0.92777 0.85360 0.85225 0.88089 0.92893 0.92805 0.90366 0.89817 0.90960 0.91258 0.91644 0.91569 0.76901 0.89271 0.89259 0.92267 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.74 10.50 -19.68 -0.21 -2.94 16 3 C 0.09 0.83 6.69 -39.24 -0.26 0.57 16 4 C -0.17 -1.33 9.03 -39.45 -0.36 -1.69 16 5 C -0.17 -1.30 9.03 -39.45 -0.36 -1.66 16 6 C 0.10 0.88 6.66 -39.24 -0.26 0.62 16 7 O -0.31 -2.80 9.63 -19.68 -0.19 -2.99 16 8 C 0.03 0.15 9.81 101.05 0.99 1.14 16 9 C -0.07 -0.64 5.14 -104.49 -0.54 -1.18 16 10 C -0.07 -0.61 5.06 -27.88 -0.14 -0.75 16 11 C -0.12 -1.13 5.31 -26.73 -0.14 -1.28 16 12 C 0.12 1.49 5.67 -4.04 -0.02 1.47 16 13 N -0.74 -10.42 5.56 -60.29 -0.33 -10.76 16 14 C 0.53 10.31 7.85 -10.98 -0.09 10.22 16 15 O -0.52 -12.23 15.86 5.56 0.09 -12.14 16 16 C -0.15 -3.19 6.16 36.01 0.22 -2.96 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.46 9.50 30.94 0.29 -15.16 16 19 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 22 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.11 -1.00 9.61 -39.45 -0.38 -1.38 16 27 H 0.05 0.20 7.66 -51.93 -0.40 -0.20 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.13 0.69 6.29 -52.49 -0.33 0.36 16 31 H 0.13 0.72 6.29 -52.48 -0.33 0.39 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.23 7.67 -51.93 -0.40 -0.17 16 34 H 0.05 0.25 7.65 -51.93 -0.40 -0.15 16 35 H 0.08 0.61 8.05 -51.93 -0.42 0.20 16 36 H 0.08 0.77 7.69 -51.93 -0.40 0.37 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.40 4.43 8.47 -40.82 -0.35 4.09 16 42 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -36.69 393.79 -8.12 -44.80 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.76 Total: 0.01 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.14 Total: -8.90 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.40 Total: -36.48 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.31 Total: -18.07 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.69 -8.12 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121019868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.019 kcal (2) G-P(sol) polarization free energy of solvation -36.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds