Wall clock time and date at job start Tue Mar 31 2020 23:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35981 * 117.00363 * 2 1 4 4 C 1.38726 * 119.99628 * 0.02562 * 3 2 1 5 5 C 1.38113 * 119.99634 * 179.70141 * 4 3 2 6 6 C 1.38714 * 120.00321 * 0.55287 * 5 4 3 7 7 O 1.35981 * 120.00486 * 179.72086 * 6 5 4 8 8 C 1.42905 * 116.99586 * 359.72953 * 7 6 5 9 9 C 1.38676 * 119.99734 * 359.44725 * 6 5 4 10 10 C 1.50698 * 120.00084 * 180.29440 * 9 6 5 11 11 C 1.53002 * 109.47021 * 85.00366 * 10 9 6 12 12 C 1.52998 * 109.47211 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47219 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00103 * 179.97438 * 13 12 11 15 15 O 1.21273 * 120.00251 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99853 * 179.97438 * 14 13 12 17 17 S 1.80993 * 109.47157 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00400 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99876 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00407 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99814 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47352 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47187 * 120.00089 * 22 20 18 25 25 H 1.48496 * 109.47090 * 239.99739 * 22 20 18 26 26 C 1.38155 * 120.00047 * 0.27976 * 9 6 5 27 27 H 1.08996 * 109.47531 * 59.99513 * 1 2 3 28 28 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46555 * 299.99411 * 1 2 3 30 30 H 1.07998 * 119.99994 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.99555 * 180.29573 * 5 4 3 32 32 H 1.09001 * 109.47103 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.47054 * 299.99751 * 8 7 6 34 34 H 1.09000 * 109.47187 * 59.99807 * 8 7 6 35 35 H 1.09005 * 109.47486 * 205.00022 * 10 9 6 36 36 H 1.09003 * 109.47450 * 325.00643 * 10 9 6 37 37 H 1.09005 * 109.46709 * 300.00131 * 11 10 9 38 38 H 1.09001 * 109.47518 * 59.99956 * 11 10 9 39 39 H 1.09005 * 109.47156 * 299.99570 * 12 11 10 40 40 H 1.09003 * 109.47590 * 60.00074 * 12 11 10 41 41 H 0.97004 * 119.99797 * 0.02562 * 13 12 11 42 42 H 1.08997 * 109.47302 * 300.00405 * 16 14 13 43 43 H 1.09003 * 109.46663 * 60.00309 * 16 14 13 44 44 H 0.96998 * 120.00107 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.00030 * 179.97438 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0068 6 6 3.3031 3.6782 0.0009 7 8 3.9206 4.8898 0.0013 8 6 3.0806 6.0459 0.0019 9 6 4.0584 2.5152 0.0004 10 6 5.5633 2.5940 0.0007 11 6 6.0658 2.7453 1.4379 12 6 7.5936 2.8260 1.4383 13 7 8.0747 2.9714 2.8144 14 6 9.3968 3.0621 3.0601 15 8 10.1882 3.0238 2.1420 16 6 9.8915 3.2124 4.4756 17 16 11.6990 3.3077 4.4761 18 6 11.9963 3.4742 6.2048 19 1 11.1667 3.4912 6.8962 20 6 13.2964 3.5845 6.6780 21 7 14.3074 3.5643 5.8353 22 14 13.6114 3.7618 8.5106 23 1 12.3168 3.7575 9.2382 24 1 14.4479 2.6285 8.9810 25 1 14.3200 5.0408 8.7697 26 6 3.4312 1.2842 -0.0002 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2123 2.3185 0.0005 31 1 1.3297 4.5113 0.0120 32 1 3.6984 6.9439 0.0017 33 1 2.4512 6.0382 -0.8880 34 1 2.4514 6.0374 0.8920 35 1 5.9751 1.6831 -0.4341 36 1 5.8823 3.4541 -0.5881 37 1 5.6540 3.6561 1.8727 38 1 5.7469 1.8853 2.0268 39 1 8.0057 1.9153 1.0033 40 1 7.9123 3.6862 0.8496 41 1 7.4417 3.0017 3.5488 42 1 9.4799 4.1235 4.9096 43 1 9.5725 2.3528 5.0651 44 1 15.2160 3.6410 6.1660 45 1 4.0194 0.3784 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121019868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:51 Heat of formation + Delta-G solvation = -123.816168 kcal Electronic energy + Delta-G solvation = -25417.143317 eV Core-core repulsion = 21525.324580 eV Total energy + Delta-G solvation = -3891.818738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50317 -40.57697 -39.88560 -37.73984 -36.60256 -34.58592 -34.46048 -31.99923 -30.94368 -30.08370 -28.30882 -27.72510 -27.68377 -26.46226 -23.29097 -22.97544 -22.07721 -21.49499 -19.80776 -18.97656 -18.43936 -17.84876 -17.74743 -17.18760 -16.87419 -16.81327 -16.74256 -16.38816 -15.86663 -15.77695 -15.59860 -15.39979 -14.78079 -14.56710 -14.48206 -14.22511 -13.92176 -13.71690 -13.64622 -13.16476 -13.14807 -13.01954 -12.90571 -12.89220 -12.58610 -12.53518 -12.40288 -12.26155 -11.71821 -11.69512 -11.53540 -11.30887 -11.15188 -10.95610 -10.26485 -10.09306 -9.88027 -8.67212 -8.66081 -8.34052 -6.12196 0.22977 0.47657 1.28051 1.42107 1.48052 1.59373 1.62986 2.26840 2.31520 2.37605 2.50749 2.70978 3.00051 3.33402 3.64950 3.78075 3.94784 4.02338 4.04649 4.18275 4.26968 4.31350 4.34149 4.38655 4.41549 4.42981 4.47904 4.51976 4.53311 4.59262 4.73333 4.75749 4.78438 4.89403 4.92808 5.05554 5.20543 5.29485 5.33943 5.40348 5.42886 5.48729 5.65973 6.20880 6.36465 6.53107 6.56296 7.07216 7.26391 8.75536 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.001662 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.047211 B =16847.000227 C =17276.671374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.080 3.920 4 C -0.173 4.173 5 C -0.169 4.169 6 C 0.083 3.917 7 O -0.330 6.330 8 C 0.019 3.981 9 C -0.081 4.081 10 C -0.065 4.065 11 C -0.106 4.106 12 C 0.122 3.878 13 N -0.713 5.713 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.130 4.130 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.122 4.122 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.416 0.584 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.271 0.729 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.743 -0.982 -11.790 37.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.035 3.965 4 C -0.192 4.192 5 C -0.188 4.188 6 C 0.038 3.962 7 O -0.244 6.244 8 C -0.075 4.075 9 C -0.082 4.082 10 C -0.103 4.103 11 C -0.143 4.143 12 C -0.002 4.002 13 N -0.367 5.367 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.281 4.281 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.141 4.141 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.128 0.872 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.253 0.747 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -34.010 -1.177 -13.357 36.558 hybrid contribution -1.041 0.400 2.084 2.363 sum -35.050 -0.777 -11.274 36.827 Atomic orbital electron populations 1.23301 0.76707 1.05392 1.02116 1.86060 1.23212 1.26750 1.89268 1.19054 0.92405 0.84868 1.00162 1.21278 1.01098 0.91186 1.05620 1.21278 0.92944 0.99334 1.05225 1.18918 0.91300 0.85588 1.00398 1.86096 1.36591 1.12674 1.89037 1.23280 0.96275 0.85909 1.02075 1.19041 0.95938 0.89925 1.03326 1.20297 0.89618 1.03747 0.96659 1.21588 0.91813 1.03475 0.97464 1.21393 0.94963 1.01504 0.82298 1.45779 1.05839 1.74658 1.10451 1.20087 0.82904 0.75295 0.89956 1.90684 1.56213 1.50633 1.47090 1.23377 1.01062 1.06694 0.96949 1.85582 0.99316 1.96066 1.11592 1.23247 0.96006 1.58085 0.92049 0.89881 1.26144 0.94632 0.93850 1.04593 1.70194 0.99654 1.47915 1.37034 0.84887 0.78788 0.78062 0.76079 1.18023 1.19906 1.19904 1.20306 0.91827 0.97679 1.04279 0.91744 0.86711 0.91826 0.83100 0.83081 0.87178 0.91732 0.91786 0.89729 0.90519 0.90813 0.90227 0.92126 0.92535 0.74739 0.87199 0.87161 0.91988 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.46 10.50 -93.34 -0.98 -6.44 16 3 C 0.08 1.34 6.69 22.49 0.15 1.49 16 4 C -0.17 -2.31 9.03 22.36 0.20 -2.11 16 5 C -0.17 -2.30 9.03 22.35 0.20 -2.10 16 6 C 0.08 1.42 6.66 22.49 0.15 1.57 16 7 O -0.33 -5.60 9.63 -93.34 -0.90 -6.50 16 8 C 0.02 0.18 9.81 113.37 1.11 1.29 16 9 C -0.08 -1.45 5.14 -19.78 -0.10 -1.55 16 10 C -0.07 -1.11 5.06 29.85 0.15 -0.96 16 11 C -0.11 -1.82 5.31 30.59 0.16 -1.66 16 12 C 0.12 2.89 5.67 86.38 0.49 3.38 16 13 N -0.71 -19.04 5.56 -463.05 -2.57 -21.61 16 14 C 0.53 20.41 7.85 87.66 0.69 21.10 16 15 O -0.57 -27.31 15.86 -3.01 -0.05 -27.36 16 16 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 17 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 18 C -0.55 -31.60 9.50 67.95 0.65 -30.96 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.72 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 22 Si 1.00 44.02 29.55 68.60 2.03 46.04 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 C -0.12 -2.15 9.61 22.35 0.21 -1.93 16 27 H 0.06 0.34 7.66 -2.39 -0.02 0.32 16 28 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.35 7.66 -2.38 -0.02 0.33 16 30 H 0.15 1.20 6.29 -2.91 -0.02 1.19 16 31 H 0.15 1.28 6.29 -2.91 -0.02 1.26 16 32 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.44 7.67 -2.38 -0.02 0.42 16 34 H 0.06 0.46 7.65 -2.39 -0.02 0.44 16 35 H 0.08 1.29 8.05 -2.38 -0.02 1.27 16 36 H 0.08 1.40 7.69 -2.39 -0.02 1.38 16 37 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.42 8.17 8.47 -92.71 -0.79 7.39 16 42 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 43 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 45 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -81.39 393.79 2.95 -78.43 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.22 Total: 18.36 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 6.08 Total: -14.82 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -2.29 Total: -77.91 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -1.93 Total: -40.30 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -81.39 2.95 -78.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121019868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.382 kcal (2) G-P(sol) polarization free energy of solvation -81.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds